Труды сотрудников ИЛ им. В.Н. Сукачева СО РАН

[Текст] = Clarification of taxonomic status of Rhododendron Ledebourii Pojark. Using the aflp wethod DNA sequence analysis : материалы временных коллективов / Н. А. Тихонова // Исследование компонентов лесных экосистем Сибири: Материалы конференции молодых ученых, 5-6 апреля 2012 г. , Красноярск. - Красноярск : Институт леса им. В.Н. Сукачева СО РАН , 2012. - Вып. 13. - С. 64-67. - Библиогр. в конце ст.
Аннотация: AFLP genetic analysis of DNA sequences of seven populations of rhododendrons of section Rhodorastra, growing in the mountains of southern Siberia was carried out. The data obtained confirmed species' status of Rhododendron ledebourii. The limits of areas of Rhododendrons ledebourii and Rh. dauricum were specified.

Держатели документа:
Институт леса им. В.Н. Сукачева Сибирского отделения Российской академии наук : 660036, Красноярск, Академгородок, 50/28

Доп.точки доступа:
Tikhonova Natal'ya Alexandrovna

/ O. V. Goryachkina [et al.] // Plant Syst. Evol. - 2013. - Vol. 299, Is. 2. - P471-479, DOI 10.1007/s00606-012-0737-y. - Cited References: 36. - The authors thank Aleksander P. Isaev Ph.D. (Institute for Biological Problems of Cryolithozone SB RAS, Yakutsk), Alexey P. Barchenkov Ph.D. (V.N. Sukachev Institute of Forest SB RAS, Krasnoyarsk), and Candagdorj Jamiyansuren Ph.D. (Institute of Botany, Mongolian Academy of Sciences, Ulaanbaatar) for supplying the seed samples. This work was supported by grant no. 76 from the Integration Program of the Siberian Branch of the Russian Academy of Sciences and the Russian Foundation for Basic Research (Projects No. 11-04-00063 and 10-04-90780). . - 9. - ISSN 0378-2697РУБ Plant Sciences + Evolutionary Biology

Аннотация: Karyotypes of three Larix species (L. sibirica, L. gmelinii, and L. cajanderi) were analyzed using fluorescence in situ hybridization (FISH) with 45S and 5S ribosomal RNA gene probes and 4',6-diamidino-2-phenylindole (DAPI) staining. Two major 45S ribosomal DNA (rDNA) loci (per haploid genome) have been observed in the intercalary regions of two metacentric chromosomes, III and IV, of L. sibirica; in addition to them, minor nucleolus organizing regions (NORs) were mapped in pericentromeric regions of chromosomes I, II, VI, and XII. Two closely related species, L. gmelinii and L. cajanderi, showed similar hybridization patterns; both species possessed an additional major locus of 45S rDNA in the distal region of the long arm of submetacentric chromosome VII that is absent in L. sibirica. Only one locus of the 5S rDNA was found in all larch species we studied; it was located in the distal region of the chromosome III short arm, which also carried the major NOR in the opposite arm. This chromosome containing major loci of the two ribosomal RNA gene families can serve as a marker of the genus Larix. The intra- and interspecific karyotype diversity in the genus Larix is discussed.

Полный текст,
WOS,
Scopus

Держатели документа:
[Goryachkina, Olga V.
Muratova, Elena N.] Russian Acad Sci, VN Sukachev Inst Forest, Siberian Branch, Krasnoyarsk 660036, Russia
[Badaeva, Ekaterina D.
Zelenin, Alexandr V.] Russian Acad Sci, VA Engelhardt Mol Biol Inst, Moscow 119991, Russia

Доп.точки доступа:
Goryachkina, O.V.; Badaeva, E.D.; Muratova, E.N.; Zelenin, A.V.

/ N. V. Oreshkova, M. M. Belokon, S. . Jamiyansuren // Russ. J. Genet. - 2013. - Vol. 49, Is. 2. - P178-186, DOI 10.1134/S1022795412120095. - Cited References: 57. - This work was supported by the Russian Foundation for Basic Research, project nos. 10-04-00786-a, 11-04-00478-a, and 11-04-92112-YaF_a. . - 9. - ISSN 1022-7954РУБ Genetics & Heredity

Аннотация: The genetic diversity of SSR markers was studied in six populations of Siberian larch, two popu-lations of Gmelin larch, and four populations of Cajander larch. Seven pairs of nuclear microsatellite loci were used for this analysis. 103 allelic variants were detected in 365 individuals of three species of larch. According to the AMOVA results, the variability proportion that characterizes the differences between three Larix species was twice as higher (15%) than the proportion that accounts for among-population differences within the species (6%). The differentiation of the populations of three species of larch based on SSR markers exceeded 12% (F (ST) = 0.121). A significant correlation of the genetic distances with the geographic distances between populations was found (r = 0.835, P = 0.01).

Полный текст,
WOS,
Scopus

Держатели документа:
[Oreshkova, N. V.] Russian Acad Sci, Sukachev Inst Forest, Siberian Branch, Krasnoyarsk 660036, Russia
[Belokon, M. M.] Russian Acad Sci, Vavilov Inst Gen Genet, Moscow 119991, Russia
[Jamiyansuren, S.] Mongolian Acad Sci, Inst Bot, Ulaanbaatar 210523, Mongol Peo Rep

Доп.точки доступа:
Oreshkova, N.V.; Belokon, M.M.; Jamiyansuren, S...

[Text] / M. . Tomoshevich [et al.] // Forest Pathol. - 2013. - Vol. 43, Is. 5. - P345-359, DOI 10.1111/efp.12036. - Cited References: 50. - We thank Dr Richard Baker (FERA, UK), Dr Annie Yart and Dr Marie-Laure Desprez-Loustau (INRA, France) and the two anonymous reviewers for their valuable comments on the manuscript. We also thank Dr Vadim A. Melnik (Botanical Institute of the Russian Academy of Science, Saints Petersburg, Russia) for the identification of some fungi. This study was supported by the EU FP7 Projects PRATIQUE (No 212459) and ISEFOR (No 245268), a grant of President of the Russian Federation (MK-7049.2010.4) and a grant of Mayor of the city Novosibirsk (No 35-10). . - 15. - ISSN 1437-4781РУБ Forestry

Аннотация: In this article, we report observations made during thirteen years on foliar fungal pathogens attacking European and Eurasian woody broadleaved species in Siberian arboreta and cities and discuss the possibility of using such data for detecting exotic pathogens that may represent a danger for European tree and shrub species, should these pathogens be introduced into Europe. A total of 102 cases of symptomatic infections (fungus-host plant associations) involving 67 fungal species were recorded on 50 of the 52 European and Eurasian woody plant species. All but four of the fungi found during the surveys were previously reported in Europe. However, 29 fungus-host plant associations are apparently new to science, suggesting that complexes of cryptic species differing in their host range and geographic range may occur. Seventeen percentage of associations were given a high damage score, that is, more than 50% of plant area was attacked, for at least some localities. In nearly half of the cases, fungus-host plant associations were found to be very frequent, that is, occurring every year and at all locations where the plant was inspected. A list of pathogen-host associations in Siberia deserving further investigation is provided, either because the pathogen is not yet recorded in Europe or because the pathogen-host association has not yet been reported, and the damage is high or, finally, because the damage and infestation level is unusually high in known associations. Further studies should involve molecular characterization of these foliar pathogens and their host range testing.

WOS,
Полный текст,
Scopus

Держатели документа:
[Tomoshevich, M.] RAS, SB, Cent Siberian Bot Garden, Novosibirsk, Russia
[Kirichenko, N.] RAS, SB, VN Sukachev Inst Forest, Krasnoyarsk 660036, Russia
[Holmes, K.
Kenis, M.] CABI, Delemont, Switzerland

Доп.точки доступа:
Tomoshevich, M.; Kirichenko, Natalia I.; Кириченко, Наталья Ивановна; Holmes, K.; Kenis, M.; EU [212459, 245268]; Russian Federation [MK-7049.2010.4]; city Novosibirsk [35-10]

/ T. C. Harrington [et al.] // Plant Disease. - 2002. - Vol. 86, Is. 4. - P418-422 . - ISSN 0191-2917
Аннотация: Ceratocystis laricicola and C. polonica are fungal symbionts of bark beetle species of the genus lps that attack species of Larix and Picea, respectively, across Eurasia. Earlier studies found that these fungal species were morphologically identical, had similar isozymes patterns, and had identical internal transcribed spacer (ITS) sequences of the rDNA operon. We analyzed 27 isolates from Europe, southwestern Siberia (Russia) and Japan, representing the known geographic ranges of the two species. Phylogenetic analysis of the DNA sequences of a portion of the MAT-2 idiomorph showed these species to be distinct, with the Japanese isolates of C. laricicola having a sequence slightly different (5 bp) from those of the Russian and European isolates of C. laricicola. Sexual compatibility tests showed full interfertility among isolates of C. polonica from Europe, Russia and Japan, but isolates of C. polonica were not fully interfertile with isolates of C. laricicola. A Russian and a European isolate of C. laricicola mated with each other but not with the Japanese isolates of C. laricicola. Mature L. sibirica and P. obovata were inoculated with isolates of C. laricicola and C. polonica from Europe, Russia, and Japan, and measurement of lesions in the inner bark/cambium region demonstrated strong host specialization. The data suggest that the two fungal species are very closely related and are distinguished primarily by their physiological specialization to the hosts of their bark beetle vectors.

Scopus,
WOS

Держатели документа:
Department of Plant Pathology, Iowa State University, Ames, IO 50011, United States
Laboratory of Microbiology, Sukachev Institute of Forestry, Krasnoyarsk, Russian Federation
Department of Plant Pathology, Iowa State University, United States

Доп.точки доступа:
Harrington, T.C.; Pashenova, N.V.; McNew, D.L.; Steimel, J.; Konstantinov, M.Yu.

[Text] / V. L. Semerikov [et al.] // Russ. J. Genet. - 2014. - Vol. 50, Is. 6. - P577-585, DOI 10.1134/S1022795414040127. - Cited References: 38. - This work was supported by the Russian Foundation for Basic Researches, project nos. 11-04-92226-Mong_a and 12-04-00062-a, and by the Program of the Ural Branch of the Russian Academy of Sciences, project no. 12-I-4-2064. The authors thank the director of the Institute for Botany, Academy of Science of Mongolia, Academician Ch. Dzhugarzhav, and the director of the branch of FBI "Roslesoashchita" Centre of Forest Protection, Altai region, A.Ya. Bondarev, for help with material collection. . - ISSN 1022-7954. - ISSN 1608-3369РУБ Genetics & Heredity

Аннотация: The variability of four microsatellite loci of chloroplast DNA was studied in 38 populations of Pinus sylvestris in the European part of Russia, in Siberia, Kazakhstan, Transbaikalia and Mongolia. High variability was observed in all regions. In total, 152 haplotypes were identified. The level of population differentiation R (ST) was 2.1%. The differentiation of three geographical groups of populations (European, Siberian-Kazakhstan and Transbaikalian-Mongolian) was insignificant (R (CT) = 0.004). At the same time, some rare haplotypes were found to be specific for a certain geographical region. Distribution of the rare haplotypes, which differentiated European populations from Asian populations and Mongolian and Transbaikalian populations from the Siberian, showed the independence of the history of these regions. This corresponds more to the hypothesis that the modern area of Pinus sylvestris originated via settlement from many origins than to the hypothesized single center of the post-glacial recolonization. The distribution of the pairwise differences between the individual specimens corresponded to the model of sudden population growth. The assessments of the age of this event for Pinus sylvestris (4.5-4.7 million years), which were obtained on the basis of this model, significantly exceeded the age of the Quaternary. Therefore, the revealed population growth is hardly due to the changes in flora related with the glaciation, but rather mirrors the moment of the species formation.

WOS,
Scopus

Держатели документа:
[Semerikov, V. L.
Semerikova, S. A.
Dymshakova, O. S.] Russian Acad Sci, Inst Plant & Anim Ecol, Ural Branch, Ekaterinburg 620144, Russia
[Zatsepina, K. G.
Tarakanov, V. V.
Tikhonova, I. V.
Ekart, A. K.] Russian Acad Sci, Sukachev Forest Inst, Siberian Branch, Krasnoyarsk 660036, Russia
[Vidyakin, A. I.] Russian Acad Sci, Inst Biol, Ural Branch, Komi Sci Ctr, Kirov 610035, Russia
[Jamiyansuren, S.] Acad Sci Mongolia, Inst Bot, Ulaanbaatar 210361, Mongol Peo Rep
[Rogovtsev, R. V.] Ctr Forest Protect Novosibirsk Reg, Novosibirsk 630015, Russia
[Kalchenko, L. I.] Ctr Forest Protect Altai Reg, Barnaul 656056, Russia
ИЛ СО РАН

Доп.точки доступа:
Semerikov, V.L.; Semerikova, S.A.; Dymshakova, O.S.; Zatsepina, K.G.; Tarakanov, V.V.; Tikhonova, I.V.; Ekart, A.K.; Vidyakin, A.I.; Jamiyansuren, S...; Rogovtsev, R.V.; Kalchenko, L.I.; Russian Foundation for Basic Researches [11-04-92226-Mong_a, 12-04-00062-a]; Program of the Ural Branch of the Russian Academy of Sciences [12-I-4-2064]

[Текст] / N. I. Kirichenko [и др.] // Лесные биогеоценозы бореальной зоны: география, структура, функции, динамика. Материалы Всероссийской научной конференции с международным участием, посвященной 70-летию создания Института леса им. В.Н. Сукачева СО РАН 16-19 сентября 2014 г., Красноярск. - Новосибирск : Изд-во СО РАН, 2014. - С. 632-634. - Библиогр. в конце ст.
Аннотация: A genetic library is being currently developed for leafmining insects, attacking native and alien woody plants in Siberia, that may allow a quick and reliable identification of the immature stages of potential pests and invaders. Integration of molecular data with ecological characteristics of leafminers, particularly larval and pupal morphology, and diagnostic characteristics of mines will accelerate the detection and tracking of insect pests.

Полный текст

Держатели документа:
Институт леса им. В.Н. Сукачева СО РАН : 660036, Красноярск, Академгородок, 50, стр. 28

Доп.точки доступа:
Kirichenko, Natal'ya Ivanovna; Кириченко, Наталья Ивановна; Augustin, S.; Roques, A.; Роквес А.; Van Nieukerken, E. J.; Doorenweerd , C.; Lopez-Vaamonde, C.

[Text] / N. Kirichenko [et al.] // ZooKeys. - 2015. - Is. 473. - P157-176, DOI 10.3897/zookeys.473.8543. - Cited References:44. - We acknowledge the team at the Biodiversity Institute of Ontario,University of Guelph, Ontario, Canada for their assistance in theproduction of DNA barcodes. Funding for DNA barcoding was partlyprovided by the government of Canada through Genome Canada and theOntario Genomics Institute in support of the International Barcode ofLife project, and by NSERC. Sequence analysis was enabled by a grantfrom the government of Canada through Genome Canada and the OntarioGenomics Institute in support of the International Barcode of LifeProject. Our work was also aided by the BOLD informatics platform whosedevelopment is funded by the Ontario Ministry of Economic Developmentand Innovation. Peter Huemer gratefully acknowledges funding frominatura Erlebnis Naturschau (Dornbirn, Austria) and the Promotion ofEducational Policies, University and Research Department of theAutonomous Province of Bolzano - South Tyrol for support of the project"Genetic biodiversity archive - DNA barcoding of Lepidoptera of thecentral Alpine region (South, East and North Tyrol)". Natalia Kirichenkowas supported by a fellowship of LE STUDIUM (R), France. . - ISSN 1313-2989. - ISSN 1313-2970РУБ Zoology

Аннотация: Europe has one of the best-known Lepidopteran faunas in the world, yet many species are still being discovered, especially in groups of small moths. Here we describe a new gracillariid species from the southeastern Alps, Callisto basistrigella Huemer, Deutsch & Triberti, sp. n. It shows differences from its sister species C. coffeella in morphology, the barcode region of the cytochrome c oxidase I gene and the nuclear gene histone H3. Both C. basistrigella and C. coffeella can co-occur in sympatry without evidence of admixture. Two C. basistrigella specimens show evidence of introgression. We highlight the importance of an integrative approach to delimit species, combining morphological and ecological data with mitochondrial and nuclear sequence data. Furthermore, in connection with this study, Ornix blandella Muller - Rutz, 1920, syn. n. is synonymized with C. coffeella (Zetterstedt, 1839).

WOS,
Scopus

Держатели документа:
INRA, Zool Forestiere UR0633, F-45075 Orleans, France.
SB RAS, Sukachev Inst Forest, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Krasnoyarsk 660041, Russia.
Tiroler Landesmuseen Betriebsgesellsch MbH, Nat Wissensch Abt, A-6020 Innsbruck, Austria.
Museo Civ Storia Nat, I-I37129 Verona, Italy.
Museum Natl Hist Nat, ISYEB, UMR7205, F-75005 Paris, France.
ИЛ СО РАН

Доп.точки доступа:
Kirichenko, Natalia; Huemer, Peter; Deutsch, Helmut; Triberti, Paolo; Rougerie, Rodolphe; Lopez-Vaamonde, Carlos; government of Canada through Genome Canada; Ontario Genomics Institutein support of the International Barcode of Life project; NSERC; Ontario Ministry of Economic Development and Innovation; inatura Erlebnis Naturschau (Dornbirn, Austria); Promotion of Educational Policies,University and Research Department of the Autonomous Province of Bolzano- South Tyrolfellowship of LE STUDIUM(R), France

[Text] / F. Mayer [et al.] // Mol. Ecol. - 2015. - Vol. 24, Is. 6. - P1292-1310, DOI 10.1111/mec.13104. - Cited References:112. - We are grateful to four anonymous reviewers for their many suggestions that helped us improve our manuscript. Some of the analyses were performed on the high-performance computer cluster of the Universite libre de Bruxelles (HYDRA), funded by the Belgian Fund for Scientific Research (F.R.S.-FNRS). The authors would like to gratefully thank all contributors of samples cited in Tables S2 and S3 (Supporting information), especially Aurelien Salle for sending us DNA and Bo Langstrom and Niklas Bjorklund for providing valuable contacts to collectors in northern Europe. We thank Yuri Baranchikov, Vladimir Petko, Vyacheslav Tarakanov (institute director from Novosibirsk) and Andrey Kirichenko for their hospitality and help in the field in Russia. We also thank Wang Zhiliang for sending us samples of Ips nitidus. We are thankful to the DSF for support on the field and in particular to Bernard Boutte, Jean-Luc Flot and Louis-Michel Nageleisen and to Olivier Hardy, Marius Gilbert, Christian Stauffer for valuable comments on this study. F.M. was supported by a doctoral grant from the Belgian Fonds pour la Formation a la Recherche dans l'Industrie et l'Agriculture (FRIA) and by an award from the Fonds David and Alice Van Buuren. Financial support to the project was provided by the F.R.S.-FNRS (grant FRFC 2.4.554.09 F). . - ISSN 0962-1083. - ISSN 1365-294XРУБ Biochemistry & Molecular Biology + Ecology + Evolutionary Biology

Аннотация: While phylogeographic patterns of organisms are often interpreted through past environmental disturbances, mediated by climate changes, and geographic barriers, they may also be strongly influenced by species-specific traits. To investigate the impact of such traits, we focused on two Eurasian spruce bark beetles that share a similar geographic distribution, but differ in their ecology and reproduction. Ips typographus is an aggressive tree-killing species characterized by strong dispersal, whereas Dendroctonus micans is a discrete inbreeding species (sib mating is the rule), parasite of living trees and a poor disperser. We compared genetic variation between the two species over both beetles' entire range in Eurasia with five independent gene fragments, to evaluate whether their intrinsic differences could have an influence over their phylogeographic patterns. We highlighted widely divergent patterns of genetic variation for the two species and argue that the difference is indeed largely compatible with their contrasting dispersal strategies and modes of reproduction. In addition, genetic structure in I.typographus divides European populations in a northern and a southern group, as was previously observed for its host plant, and suggests past allopatric divergence. A long divergence time was estimated between East Asian and other populations of both species, indicating their long-standing presence in Eurasia, prior to the last glacial maximum. Finally, the strong population structure observed in D. micans for the mitochondrial locus provides insights into the recent colonization history of this species, from its native European range to regions where it was recently introduced.

WOS,
Scopus

Держатели документа:
Univ Libre Bruxelles, Lutte Biol & Ecol Spatiale, Brussels, Belgium.
Univ Oxford, Dept Zool, Evolutionary Ecol Infect Dis, Oxford, England.
Swedish Univ Agr Sci, Dept Ecol, Uppsala, Sweden.
Russian Acad Sci, VN Sukachev Inst Forest, Siberian Branch, Krasnoyarsk, Russia.
Univ Libre Bruxelles, Evolutionary Biol & Ecol, Brussels, Belgium.
Norwegian Forest & Landscape Inst, As, Norway.
Univ Nat Resources & Life Sci, Inst Forest Entomol Forest Pathol & Forest Protec, Vienna, Austria.
ИЛ СО РАН

Доп.точки доступа:
Mayer, Francois; Piel, Frederic B.; Cassel-Lundhagen, Anna; Kirichenko, Natalia; Grumiau, Laurent; Okland, Bjorn; Bertheau, Coralie; Gregoire, Jean-Claude; Mardulyn, Patrick; Belgian Fund for Scientific Research (F.R.S.-FNRS); DSF; Belgian Fonds pour la Formation a la Recherche dans l'Industrie et l'Agriculture (FRIA); Fonds David and Alice Van Buuren; F.R.S.-FNRS [FRFC 2.4.554.09 F]

/ T. S. Sedelnikova, A. V. Pimenov // Biol. Bull. - 2015. - Vol. 42, Is. 5. - P401-410, DOI 10.1134/S106235901505012X . - ISSN 1062-3590
Аннотация: A comparative study of yellow-anthered and red-anthered forms of Scots pine, growing in hydrothermally contrasting bog and upland ecotopes, was performed by karyological traits and nuclear DNA content. Some differences were revealed between yellow-anthered and red-anthered forms of pine as components of intraspecific diversity in the frequency of occurrence of violations in the number of chromosomes, chromosome sizes (total length of diploid set, absolute and relative lengths), the centromeric index, the localization of secondary constrictions in chromosomes, and the amount of DNA. © 2015, Pleiades Publishing, Inc.

Scopus,
WOS

Держатели документа:
Sukachev Institute of Forestry, Siberian Branch, Russian Academy of Sciences, Akademgorodok, 50, p. 28, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Sedelnikova, T. S.; Pimenov, A. V.

[Text] / N. N. Selochnik [et al.] // Silva. Fenn. - 2015. - Vol. 49, Is. 5. - Ст. 1328. - Cited References:65. - We thank Dr. Wilhelm de Beer from the Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, for his advice regarding the phylogenetic component of this study. The study was financially supported by the University of Helsinki and the Emil Aaltonen Foundation, Finland; the members of the Tree Protection Co-operative Programme (TPCP), the THRIP initiative of the Department of Trade and Industry, and the University of Pretoria, South Africa. . - ISSN 0037-5330. - ISSN 2242-4075РУБ Forestry

Аннотация: Several eastern European countries have reported outbreaks of oak die-back during the 1980's. Species of Ophiostoma Syd. were isolated from diseased trees and have been suggested to be the possible causal agents of the die-back, but this view have generally not been accepted. In order to monitor the post-outbreak region of oak die-back and to consider the possible role of Ophiostoma spp. in the syndrome, research has been conducted in the Tellerman forest, Voronezh region, Russia between 2005 and 2011. Our study resulted in the isolation of ophiostomatoid fungi from Quercus robur L. trees displaying external signs of desiccation. Fungi were identified based on morphological characteristics and DNA sequence comparisons. Three species of Ophiostoma were identified including O. grandicarpum (Kowalski & Butin) Rulamort, a species closely related to O. abietinum Marm. & Butin, O. fusiforme Aghayeva & M.J. Wingf. and O. lunatum Aghayeva & M.J. Wingf. representing a poorly understood species complex, and most commonly O. quercus (Georgev.) Nannf. Pathogenicity of these fungi was tested using artificial inoculations on Q. robur trees. The fungi were shown to be non-pathogenic and unlikely to play any role in oak die-back. These fungi are most likely only components in a complex of abiotic, biotic and anthropogenic factors that have contributed to a die-back of Quercus spp. in Russia.

WOS

Держатели документа:
Forest Sci Inst RAS, Uspenskoye 143030, Moscow Region, Russia.
VN Sukachev Inst Forest SB RAS, Krasnoyarsk 660036, Russia.
St Petersburg State Forest Tech Univ, Dept Forest Protect & Game Management, St Petersburg 194021, Russia.
Univ Pretoria, FABI, ZA-0002 Pretoria, South Africa.
Univ Helsinki, Dept Forest Sci, FI-00014 Helsinki, Finland.

Доп.точки доступа:
Selochnik, Nelly N.; Pashenova, Nataliya V.; Sidorov, Evgeny; Wingfield, Michael J.; Linnakoski, Riikka; University of Helsinki; Emil Aaltonen Foundation, Finland

[Text] / N. N. Selochnik [et al.] // Silva. Fenn. - 2015. - Vol. 49, Is. 5. - Ст. 1328, DOI 10.14214/sf.1328. - Cited References:65. - We thank Dr. Wilhelm de Beer from the Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, for his advice regarding the phylogenetic component of this study. The study was financially supported by the University of Helsinki and the Emil Aaltonen Foundation, Finland; the members of the Tree Protection Co-operative Programme (TPCP), the THRIP initiative of the Department of Trade and Industry, and the University of Pretoria, South Africa. . - ISSN 0037-5330. - ISSN 2242-4075РУБ Forestry

Аннотация: Several eastern European countries have reported outbreaks of oak die-back during the 1980's. Species of Ophiostoma Syd. were isolated from diseased trees and have been suggested to be the possible causal agents of the die-back, but this view have generally not been accepted. In order to monitor the post-outbreak region of oak die-back and to consider the possible role of Ophiostoma spp. in the syndrome, research has been conducted in the Tellerman forest, Voronezh region, Russia between 2005 and 2011. Our study resulted in the isolation of ophiostomatoid fungi from Quercus robur L. trees displaying external signs of desiccation. Fungi were identified based on morphological characteristics and DNA sequence comparisons. Three species of Ophiostoma were identified including O. grandicarpum (Kowalski & Butin) Rulamort, a species closely related to O. abietinum Marm. & Butin, O. fusiforme Aghayeva & M.J. Wingf. and O. lunatum Aghayeva & M.J. Wingf. representing a poorly understood species complex, and most commonly O. quercus (Georgev.) Nannf. Pathogenicity of these fungi was tested using artificial inoculations on Q. robur trees. The fungi were shown to be non-pathogenic and unlikely to play any role in oak die-back. These fungi are most likely only components in a complex of abiotic, biotic and anthropogenic factors that have contributed to a die-back of Quercus spp. in Russia.

WOS

Держатели документа:
Forest Sci Inst RAS, Uspenskoye 143030, Moscow Region, Russia.
VN Sukachev Inst Forest SB RAS, Krasnoyarsk 660036, Russia.
St Petersburg State Forest Tech Univ, Dept Forest Protect & Game Management, St Petersburg 194021, Russia.
Univ Pretoria, FABI, ZA-0002 Pretoria, South Africa.
Univ Helsinki, Dept Forest Sci, FI-00014 Helsinki, Finland.

Доп.точки доступа:
Selochnik, Nelly N.; Pashenova, Nataliya V.; Sidorov, Evgeny; Wingfield, Michael J.; Linnakoski, Riikka; University of Helsinki; Emil Aaltonen Foundation, Finland

[Text] / V. L. Semerikov [et al.] // Russ. J. Genet. - 2015. - Vol. 51, Is. 12. - P1199-1203, DOI 10.1134/S1022795415120108. - Cited References:20. - We thank Y.Y. Hhrunyk, A. I. Vidjakin, V.V. Tarakanov, E.V. Hantemirova, and I.V. Tikhonova for assistance with the pine material collection. The study was supported by Russian Foundation for Basic Research (grant 13-04-01028) and by Russian Federation Government (grant 14.Y26.31.0004). . - ISSN 1022-7954. - ISSN 1608-3369РУБ Genetics & Heredity

Аннотация: Fragments of genomic DNA of Scots pine (Pinus sylvestris L.) homologous to the mitochondrial DNA (mtDNA) contigs of Norway spruce (Picea abies (L.) Karst.) and loblolly pine (Pinus taeda L.) were resequenced in a sample of the Scots pine trees of European, Siberian, Mongolian, and Caucasian origin in order to develop mtDNA markers. Flanking non-coding regions of some mitochondrial genes were also investigated and resequenced. Five single nucleotide polymorphisms (SNPs) and a single minisatellite locus were identified. Caucasian samples differed from the rest by three SNPs. Two SNPs have been linked to an early described marker in the first intron of the nad7 gene, and all together revealed three haplotypes in European populations. No variable SNPs were found in the Siberian and Mongolian populations. The minisatellite locus contained 41 alleles across European, Siberian, and Mongolian populations, but, this locus demonstrated a weak population differentiation (F (ST) = 5.8), probably due to its high mutation rate.

WOS,
Scopus

Держатели документа:
Russian Acad Sci, Ural Branch, Inst Plant & Anim Ecol, Ekaterinburg 620144, Russia.
Siberian Fed Univ, Genome Res & Educ Ctr, Krasnoyarsk 660036, Russia.
Russian Acad Sci, Siberian Branch, Sukachev Inst Forest, Krasnoyarsk 660036, Russia.
Univ Gottingen, D-37077 Gottingen, Germany.
Russian Acad Sci, Vavilov Inst Gen Genet, Moscow 119991, Russia.
Texas A&M Univ, College Stn, TX 77843 USA.

Доп.точки доступа:
Semerikov, V. L.; Putintseva, Yu. A.; Oreshkova, N. V.; Semerikova, S. A.; Krutovsky, K. V.; Russian Foundation for Basic Research [13-04-01028]; Russian Federation Government [14.Y26.31.0004]

/ E. A. Babushkina [et al.] // Dendrochronologia. - 2016. - Vol. 38. - P26-37, DOI 10.1016/j.dendro.2016.02.005 . - ISSN 1125-7865
Аннотация: The genetic mechanisms underlying the relationship of individual heterozygosity (IndHet) with heterosis and homeostasis are not fully understood. Such an understanding, however, would have enormous value as it could be used to identify trees better adapted to environmental stress. Dendrochronology data, in particular the individual average radial increment growth of wood measured as the average tree ring width (AvTRW) and the variance of tree ring width (VarTRW) were used as proxies for heterosis (growth rate measured as AvTRW) and homeostasis (stability of the radial growth of individual trees measured as VarTRW), respectively. These traits were then used to test the hypothesis that IndHet can be used to predict heterosis and homeostasis of individual trees. Wood core and needle samples were collected from 100 trees of Siberian larch (Larix sibirica Ledeb.) across two populations located in Eastern Siberia. DNA samples were obtained from the needles of each individual tree and genotyped for eight highly polymorphic microsatellite loci. Then mean IndHet calculated based on the genotypes of eight loci for each tree was correlated with the statistical characteristics of the measured radial growth (AvTRW and VarTRW) and the individual standardized chronologies. The analysis did not reveal significant relationships between the studied parameters. In order to account for the strong dependence of the radial growth on tree age the age curves were examined. An original approach was employed to sort trees into groups based on the distance between these age curves. No relationship was found between these groups and the groups formed based on heterozygosity. However, further work with more genetic markers and increased sample sizes is needed to test this novel approach for estimating heterosis and homeostasis. © 2016 Elsevier GmbH.

Scopus,
WOS,
Смотреть статью

Держатели документа:
Khakasia Technical Institute, Siberian Federal University, 27 Shchetinkina St., Abakan, Russian Federation
Siberian Federal University, Pr. Svobodniy 79, Krasnoyarsk, Russian Federation
V.N. Sukachev Institute of Forest, Siberian Branch, Russian Academy of Sciences, Akademgorodok, 50/28, Krasnoyarsk, Russian Federation
Georg-August-University of Gottingen, Busgenweg 2, Gottingen, Germany
N.I. Vavilov Institute of General Genetics, Russian Academy of Sciences, 3 Gubkina St., Moscow, Russian Federation
Texas AandM University, College Station, TX, United States
Institute of Geography, Russian Academy of Sciences, 29 Staromonetniy Pereulok, Moscow, Russian Federation

Доп.точки доступа:
Babushkina, E. A.; Vaganov, E. A.; Grachev, A. M.; Oreshkova, N. V.; Belokopytova, L. V.; Kostyakova, T. V.; Krutovsky, K. V.

[Text] / N. Kirichenko [et al.] // ZooKeys. - 2016. - Is. 579. - P99-156, DOI 10.3897/zookeys.579.7166. - Cited References:68. - We are grateful to the team at the Biodiversity Institute of Ontario, University of Guelph, Ontario, Canada for their great assistance in the production of DNA barcodes. Funding for DNA barcoding and sequence analysis was partly provided by the Government of Canada through Genome Canada and the Ontario Genomics Institute in support of the International Barcode of Life project, and by NSERC. Genetic analyses were also partly funded by INRA, UR0633 Zoologie Forestiere's core funding. Our work was also aided by the BOLD informatics platform whose development is funded by the Ontario Ministry of Economic Development and Innovation. NK was supported by a fellowship of LE STUDIUM (R), France and the Russian foundation for basic research (grant No 15-29-02645). . - ISSN 1313-2989. - ISSN 1313-2970РУБ Zoology

Аннотация: During a DNA barcoding campaign of leaf-mining insects from Siberia, a genetically divergent lineage of a gracillariid belonging to the genus Micrurapteryx was discovered, whose larvae developed on Caragana Fabr. and Medicago L. (Fabaceae). Specimens from Siberia showed similar external morphology to the Palearctic Micrurapteryx gradatella and the Nearctic Parectopa occulta but differed in male genitalia, DNA barcodes, and nuclear genes histone H3 and 28S. Members of this lineage are re-described here as Micrurapteryx caraganella (Hering, 1957), comb. n., an available name published with only a brief description of its larva and leaf mine. Micrurapteryx caraganella is widely distributed throughout Siberia, from Tyumen oblast in the West to Transbaikalia in the East. Occasionally it may severely affect its main host, Caragana arborescens Lam. This species has been confused in the past with Micrurapreryx gradatella in Siberia, but field observations confirm that M. gradatella exists in Siberia and is sympatric with M. caraganella, at least in the Krasnoyarsk region, where it feeds on different host plants (Vicia amoena Fisch. and Vicia sp.). In addition, based on both morphological and molecular evidence as well as examination of type specimens, the North American Parectopa occulta Braun, 1922 and Parectopa albicostella Braun, 1925 are transferred to Micrurapteryx as M. occulta (Braun, 1922), comb. n. with albicostella as its junior synonym (syn. n.). Characters used to distinguish Micrurapteryx from Parectopa are presented and illustrated. These findings provide another example of the potential of DNA barcoding to reveal overlooked species and illuminate nomenclatural problems.

WOS,
Scopus

Держатели документа:
Sukachev Inst Forest SB RAS, Akademgorodok 50-28, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, 79 Svobodny Pr, Krasnoyarsk 660041, Russia.
INRA, Zool Forestiere UR0633, F-45075 Orleans, France.
Museo Civ Storia Nat, Lungadige Porta Vittoria 9, I-37129 Verona, Italy.
Univ Oulu, Dept Genet & Physiol, POB 3000, FI-90014 Oulu, Finland.
Agr & Agri Food Canada, Ottawa Res & Dev Ctr, Cent Expt Farm, Ottawa, ON K1A 0C6, Canada.
Univ Tours, Inst Rech Biol Insecte, CNRS UMR 7261, UFR Sci & Tech, F-37200 Tours, France.

Доп.точки доступа:
Kirichenko, Natalia; Triberti, Paolo; Mutanen, Marko; Magnoux, Emmanuelle; Landry, Jean-Francois; Lopez-Vaamonde, Carlos; Government of Canada through Genome Canada; Ontario Genomics Institute; NSERC; INRA [UR0633]; Ontario Ministry of Economic Development and Innovation; LE STUDIUM(R), France; Russian foundation for basic research [15-29-02645]

/ A. K. Ekart [et al.] // Russ. J. Gen. - 2016. - Vol. 52, Is. 3. - P273-280, DOI 10.1134/S1022795416030054 . - ISSN 1022-7954
Аннотация: The variability of 21 allozyme and three microsatellite loci of chloroplast DNA (cpDNA) was studied in the populations of Siberian spruce (Picea obovata Ledeb.) from Irkutsk oblast, Magadan oblast, Buryatia, and Mongolia. It was demonstrated that the highest level of genetic diversity among the examined populations at both allozyme and microsatellite loci was observed in the Tulyushka population from Irkutsk oblast. The lowest level of genetic diversity was observed in marginal isolated populations of Bogd Uul and Magadan. In the relict spruce population from Olkhon Island, differing from the other populations in the lowest allelic diversity of both types of markers, no expected decline of expected heterozygosity and haplotype diversity was observed. In this population, the variability parameters mentioned were close to the population mean. The obtained intrapopulation and intraspecific variability parameters of allozyme and microsatellite loci of chloroplast DNA and the data on the population differentiation at these loci indicate that the given markers can be used for the analysis of the population structure of Siberian spruce. © 2016, Pleiades Publishing, Inc.

Scopus,
Смотреть статью,
WOS

Держатели документа:
Sukachev Institute of Forest, Siberian Branch, Russian Academy of Sciences, Krasnoyarsk, Russian Federation
Institute of Plant and Animal Ecology, Ural Branch, Russian Academy of Sciences, Yekaterinburg, Russian Federation

Доп.точки доступа:
Ekart, A. K.; Semerikova, S. A.; Semerikov, V. L.; Larionova, A. Y.; Kravchenko, A. N.; Dymshakova, O. S.

[Text] / A. Kononov [et al.] // Agric. For. Entomol. - 2016. - Vol. 18, Is. 3. - P294-301, DOI 10.1111/afe.12161. - Cited References:40. - We especially thank our colleagues who provided us with material for the present study. In Russia, beetles were collected by S. Krivets and I. Kerchev (West Siberia and Primorsky Krai); G. Yurchenko (Khabarovsk Province); Yu. Gninenko (Sakhalin Island); K. Tchilahsayeva and L. Seraya (Moscow Province and suburbs); and D. Demidko (Khakasiya). H. Masuya kindly collected beetles in Japan. This work was supported in part by the Russian Foundation for Fundamental Research (Project No. 14-04-01235a); the Siberian branch of the Russian Academy of Sciences (Project No. VI.52.2.6); and the State scientific project (Project No. 0324-2015-0003). . - ISSN 1461-9555. - ISSN 1461-9563РУБ Entomology

Аннотация: 1 The four-eyed fir bark beetle Polygraphus proximus Blandf., native in Far Eastern Eurasia and nearby islands, is an invasive pest of fir trees in Siberian and European parts of Russia. Its invasion has been overlooked and was only finally appreciated in 2008. 2 Subsequently, the scale and area of damage to the forests has increased catastrophically. Thus, extensive monitoring and population control are required to localize and stop any further spread of the invasion. 3 We used mitochondrial DNA markers to analyze the genetic diversity and population structure of invasive and aboriginal populations of P. proximus, aiming to establish the main sources and corridors of its spread and to infer the history of colonization. 4 Eighteen haplotypes clustered in five groups were identified. The aboriginal populations had the highest degree of haplotype variability, including almost all haplotypes found in the areas of invasion. The Siberian introduced populations had a sufficient reduction of genetic variation, and a strong geographical partitioning. The European populations mostly had the same haplotypes as the invasive Siberian populations. 5 The results of the present study support the scenario of P. proximus spreading from the Far East of Russia westward via timber transport along the major Russian railway network.

WOS,
Смотреть статью

Держатели документа:
Russian Acad Sci, Siberian Branch, Inst Cytol & Genet, 10 Prospekt Lavrentyeva, Novosibirsk 630090, Russia.
Russian Acad Sci, Siberian Branch, Inst Systemat & Ecol Anim, 11 Frunze Str, Novosibirsk 930091, Russia.
Marshall Univ, Dept Biol Sci, 1601 5th Ave, Huntington, WV 25755 USA.
Russian Acad Sci, Siberian Branch, Sukachev Inst Forest, 50-28 Akademgorodok, Krasnoyarsk 660036, Russia.

Доп.точки доступа:
Kononov, Alexandr; Ustyantsev, Kirill; Blinov, Alexandr; Fet, Victor; Baranchikov, Yuri N.; Russian Foundation for Fundamental Research [14-04-01235a]; Siberian branch of the Russian Academy of Sciences [VI.52.2.6]; State scientific project [0324-2015-0003]

/ A. N. Kravchenko, A. K. Ekart, A. Y. Larionova // Russ. J. Gen. - 2016. - Vol. 52, Is. 11. - P1142-1148, DOI 10.1134/S1022795416090088 . - ISSN 1022-7954
Аннотация: The results of the study of 21 populations of Siberian spruce (Picea obovata Ledeb.) from different parts of the species natural range by microsatellite (SSR) analysis of nuclear DNA are presented. Using nine loci developed for Picea abies (L.) Karst. and Picea glauca (Moench) Voss and detecting variation in Picea obovata, the parameters of intra- and interpopulation genetic diversity, as well as the degree of population differentiation, were determined. It was demonstrated that the population of Siberian spruce in the study was characterized by a relatively high average level of intrapopulation variability (Ho = 0.408; He = 0.423) and low interpopulation differentiation (Fst = 0.048, P = 0.001) at this class of DNA markers. The genetic distance between populations ranged from 0.009 to 0.167, averaging 0.039. The isolated Magadan population, located in the extreme Northeast of Russia at a considerable distance from the main species range and characterized by the lowest genetic diversity among the studied populations, was maximally differentiated from the rest of the spruce populations. In addition, the steppe Ubukun population from Buryatia and the population from the Bogd Khan Uul Biosphere Reserve, Mongolia, were considerably different in the genetic structure from most populations of Siberian spruce, although to a lesser extent than the Magadan population. These findings are consistent with the results of previous studies of this species carried out using allozyme and microsatellite loci of chloroplast DNA and point to the prospects of using nuclear microsatellites as DNA markers to analyze the population genetic structure of Siberian spruce. © 2016, Pleiades Publishing, Inc.

Scopus,
Смотреть статью,
WOS

Держатели документа:
Sukachev Institute of Forest, Siberian Branch, Russian Academy of Sciences, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Kravchenko, A. N.; Ekart, A. K.; Larionova, A. Y.

/ A. Kononov [et al.] // BMC Genet. - 2016. - Vol. 17, DOI 10.1186/s12863-016-0463-5 . - ISSN 1471-2156
Аннотация: Background: Moths of genus Dendrolimus (Lepidoptera: Lasiocampidae) are among the major pests of coniferous forests worldwide. Taxonomy and nomenclature of this genus are not entirely established, and there are many species with a controversial taxonomic position. We present a comparative evolutionary analysis of the most economically important Dendrolimus species in Eurasia. Results: Our analysis was based on the nucleotide sequences of COI and COII mitochondrial genes and ITS2 spacer of nuclear ribosomal genes. All known sequences were extracted from GenBank. Additional 112 new sequences were identified for 28 specimens of D. sibiricus, D. pini, and D. superans from five regions of Siberia and the Russian Far East to be able to compare the disparate data from all previous studies. In total, 528 sequences were used in phylogenetic analysis. Two clusters of closely related species in Dendrolimus were found. The first cluster includes D. pini, D. sibiricus, and D. superans; and the second, D. spectabilis, D. punctatus, and D. tabulaeformis. Species D. houi and D. kikuchii appear to be the most basal in the genus. Conclusion: Genetic difference among the second cluster species is very low in contrast to the first cluster species. Phylogenetic position D. tabulaeformis as a subspecies was supported. It was found that D. sibiricus recently separated from D. superans. Integration of D. sibiricus mitochondrial DNA sequences and the spread of this species to the west of Eurasia have been established as the cause of the unjustified allocation of a new species: D. kilmez. Our study further clarifies taxonomic problems in the genus and gives more complete information on the genetic structure of D. pini, D. sibiricus, and D. superans. © 2016 The Author(s).

Scopus,
Смотреть статью,
WOS

Держатели документа:
Institute of Cytology and Genetics, the Siberian Branch of the Russian Academy of Science, 10 Prospekt Lavrentyeva, Novosibirsk, Russian Federation
USDA-APHIS-PPQ CPHST, Otis Laboratory, Building 1398, Otis Air National Guard Base, Buzzards Bay, MA, United States
Marshall University, Department of Biological Sciences, 1601 5th Avenue, Huntington, WV, United States
V.N. Sukachev Institute of Forest, the Siberian Branch of the Russian Academy of Science, 50/28 Akademgorodok, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Kononov, A.; Ustyantsev, K.; Wang, B.; Mastro, V. C.; Fet, V.; Blinov, A.; Baranchikov, Y.

/ N. I. Kirichenko [et al.] // Entomol. Rev. - 2017. - Vol. 97, Is. 2. - P183-198, DOI 10.1134/S0013873817020051 . - ISSN 0013-8738
Аннотация: The diversity and distribution of leaf mining insects developing on birches (Betula spp.) in Siberia were reviewed based on published records and our observations. Analysis of the literature revealed 52 species of leaf miners recorded as feeding on different Betula species in Siberia. Among them, three species were listed under different names and six species were erroneously recorded as birch consumers. Thus, the revised list of birch leaf miners contains 44 species. Five moth and four sawfly species are mentioned in the literature as pests of Betula. Four sawflies are known to be invasive in North America. Our collections comprised 25 species, including the micro-moth Stigmella continuella (Lepidoptera, Nepticulidae), a new species for Siberia found in Novosibirsk. Immature stages of 15 species were identified using DNA barcoding. Twenty species were recorded from several regions of Siberia for the first time. The dominant group is Lepidoptera (31 species), followed by Coleoptera (7), Hymenoptera (5), and Diptera (1). Two-thirds of all the known leaf miners develop exclusively on birches; the remaining species also colonize alders (Alnus, Betulaceae), some Rosaceae, Salicaceae, and Ulmaceae. In our observations, the majority of insects (96%) developed on B. pendula. About half of them were also observed on the East Asian birches B. dahurica, B. divaricata, B. costata, B. ermanii, and B. gmelinii; five species were found on the North American birches B. occidentalis and B. papyrifera. All the leaf mining species listed in our paper for Siberia also occur in Europe. The similarity between the miner faunas of these regions is discussed and it is warned about possible errors in diagnostics of the Siberian species using the keys and catalogues for the European fauna. The importance of DNA barcoding in the study of the local insect faunas of poorly explored regions is also emphasized. © 2017, Pleiades Publishing, Inc.

Scopus,
Смотреть статью

Держатели документа:
Sukachev Institute of Forest, Siberian Branch of Russian Academy of Sciences, Federal Research Center “Krasnoyarsk Science Center SB RAS,”, Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation
French National Institute for Agricultural Research (INRA), Orleans, France

Доп.точки доступа:
Kirichenko, N. I.; Petko, V. M.; Magnoux, E.; Lopez-Vaamonde, C.