Кл.слова (ненормированные):
Multi-gene phylogeny -- Mycotoxins -- Nectriaceae -- Neocosmospora -- Novel taxa -- Pathogen -- Taxonomy
Аннотация: Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In this study four new genera are introduced, along with 18 new species and 16 new combinations. These names convey information about relationships, morphology, and ecological preference that would otherwise be lost in a broader definition of Fusarium. To assist users to correctly identify fusarioid genera and species, we introduce a new online identification database, Fusarioid-ID, accessible at www.fusarium.org. The database comprises partial sequences from multiple genes commonly used to identify fusarioid taxa (act1, CaM, his3, rpb1, rpb2, tef1, tub2, ITS, and LSU). In this paper, we also present a nomenclator of names that have been introduced in Fusarium up to January 2021 as well as their current status, types, and diagnostic DNA barcode data. In this study, researchers from 46 countries, representing taxonomists, plant pathologists, medical mycologists, quarantine officials, regulatory agencies, and students, strongly support the application and use of a more precisely delimited Fusarium (= Gibberella) concept to accommodate taxa from the robust monophyletic node F3 on the basis of a well-defined and unique combination of morphological and biochemical features. This F3 node includes, among others, species of the F. fujikuroi, F. incarnatum-equiseti, F. oxysporum, and F. sambucinum species complexes, but not species of Bisifusarium [F. dimerum species complex (SC)], Cyanonectria (F. buxicola SC), Geejayessia (F. staphyleae SC), Neocosmospora (F. solani SC) or Rectifusarium (F. ventricosum SC). The present study represents the first step to generating a new online monograph of Fusarium and allied fusarioid genera (www.fusarium.org). © 2021 Westerdijk Fungal Biodiversity Institute
Scopus
Держатели документа:
Westerdijk Fungal Biodiversity Institute, Utrecht, 3508 AD, Netherlands
Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, Wageningen, 6708 PB, Netherlands
Netherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, Droevendaalsesteeg 10, Wageningen, 6708 PB, Netherlands
Department of Biology, Carleton University, 1125 Colonel By Drive, Ottawa, ON K1S 5B6, Canada
Plant Protection Department, Agricultural Institute of Slovenia, Hacquetova ulica 17, Ljubljana, 1000, Slovenia
Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, United States
Escuela de Biologia and Centro de Investigaciones en Productos Naturales, Universidad de Costa Rica, San Pedro, Costa Rica
Unitat de Micologia, Facultat de Medicina i Ciencies de la Salut i Institut d'Investigacio Sanitaria Pere Virgili (IISPV), Universitat Rovira i Virgili, Reus, 43201, Spain
Department of Clinical Plant Science, Faculty of Bioscience, Hosei University, 3-7-2 Kajino-cho, Koganei, Tokyo, 184-8584, Japan
ARC-Plant Health and Protection, Private Bag X5017, Stellenbosch, Western Cape 7599, South Africa
State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
University of Chinese Academy of Sciences, Beijing, 100049, China
Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR 97330, United States
Department of Microbial Drugs, Helmholtz Centre for Infection Research GmbH (HZI), Inhoffenstrasse 7, Braunschweig, 38124, Germany
Sporometrics, Toronto, ON, Canada
Dalla Lana School of Public Health, University of Toronto, Toronto, ON, Canada
Plant and Microbial Biology, 111 Koshland Hall, University of California, Berkeley, CA 94720-3102, United States
Senckenberg Biodiversity and Climate Research Center, Senckenberganlage 25, Frankfurt am Main, D-60325, Germany
Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), Faculty of Natural and Agricultural Sciences, University of Pretoria, P. Bag X20, Hatfield, Pretoria, 0028, South Africa
Department of Biotechnology and Biomedicine, DTU-Bioengineering, Technical University of Denmark, Kongens Lyngby, 2800, Denmark
Systematic Mycology Lab., Botany and Microbiology Department, Faculty of Science, Suez Canal University, Ismailia, 41522, Egypt
Department of Plant Protection, Faculty of Agriculture, University of Kurdistan, P.O. Box 416, Sanandaj, Iran
Department of Medical Microbiology, King's College Hospital, London, UK, United Kingdom
Department of Infectious Diseases, Imperial College London, London, UK, United Kingdom
Department of Mycology and Plant Resistance, V. N. Karazin Kharkiv National University, Maidan Svobody 4, Kharkiv, 61022, Ukraine
Department of Food Science and Technology, Cape Peninsula University of Technology, P.O. Box 1906, Bellville, 7535, South Africa
School of Forest Resources and Conservation, University of Florida, Gainesville, FL, United States
Department of Plant Pathology and Microbiology, College of Bio-Resources and Agriculture, National Taiwan University, No.1, Sec.4, Roosevelt Road, Taipei, 106, Taiwan
Iranian Research Institute of Plant Protection, Agricultural Research, Education and Extension Organization (AREEO), P.O. Box 19395-1454, Tehran, Iran
Natural History Museum, University of Oslo, Norway
Department of Natural History, NTNU University Museum, Trondheim, Norway
Setor de Micologia/Departamento de Biociencias e Tecnologia, Instituto de Patologia Tropical e Saude Publica, Universidade Federal de Goias/Federal University of Goias, Rua 235 - s/n – Setor Universitario - CEP: 74605-050, Goiania, Brazil
Departamento de Agronomia, Universidade Federal Rural de Pernambuco, Recife, PE 52171-900, Brazil
Departamento de Parasitologia y Micologia, Instituto de Higiene, Facultad de Medicina – Universidad de la Republica, Av. A. Navarro 3051, Montevideo, Uruguay
Department of Pharmaceutical Science, University of Perugia, Via Borgo 20 Giugno, Perugia, 74, Italy
Instituto de Investigaciones Fundamentales en Agricultura Tropical Alejandro de Humboldt (INIFAT), Academico Titular de la Academia de Ciencias de, Cuba
Grupo de Investigacion Celular y Molecular de Microorganismos Patogenos (CeMoP), Departamento de Ciencias Biologicas, Universidad de Los Andes, Bogota, 111711, Colombia
Mycology Laboratory, New York State Department of Health Wadsworth Center, Albany, NY, United States
Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchatel, Neuchatel, CH-2000, Switzerland
Senckenberg Museum of Natural History Gorlitz, PF 300 154, Gorlitz, 02806, Germany
Mycotheque de l'Universite catholique de Louvain (MUCL, BCCMTM), Earth and Life Institute – ELIM – Mycology, Universite catholique de Louvain, Croix du Sud 2 bte L7.05.06, Louvain-la-Neuve, B-1348, Belgium
Department of Microbiology, Babcock University, Ilishan Remo, Ogun State, Nigeria
The Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University, Beijing, 100083, China
Laboratorio de Micologia Clinica, Hospital de Clinicas, Universidad de Buenos Aires, Buenos Aires, Argentina
Facultad de Farmacia y Bioquimica, Universidad de Buenos Aires, Buenos Aires, Argentina
Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, United Kingdom
Laboratorio de Salud de Bosques y Ecosistemas, Instituto de Conservacion, Biodiversidad y Territorio, Facultad de Ciencias Forestales y Recursos Naturales, Universidad Austral de Chile, casilla 567, Valdivia, Chile
Institute of Grapevine and Wine Sciences (ICVV), Spanish National Research Council (CSIC)-University of La Rioja-Government of La Rioja, Logrono, 26007, Spain
Institut fur Biologie, Karl-Franzens-Universitat Graz, Holteigasse 6, Graz, 8010, Austria
Applied genomics research group, Universidad de los Andes, Cr 1 # 18 a 12, Bogota, Colombia
Center for Safe and Improved Food, Scotland's Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG, United Kingdom
Biorefining and Advanced Materials Research Center, Scotland's Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG, United Kingdom
Department of Agricultural, Forestry and Food Sciences (DISAFA), University of Torino, Largo P. Braccini 2, Grugliasco, TO 10095, Italy
BioAware, Hannut, Belgium
Research Group Mycology, Department of Biology, Ghent University, 35 K.L. Ledeganckstraat, Ghent, 9000, Belgium
Faculty of Science, University of South Bohemia, Branisovska 31, Ceske Budejovice, 370 05, Czech Republic
Department of Botany, Swedish Museum of Natural History, P.O. Box 50007, Stockholm, SE-104 05, Sweden
Microbe Division/Japan Collection of Microorganisms RIKEN BioResource Research Center, 3-1-1 Koyadai, Tsukuba, Ibaraki, 305-0074, Japan
Department of Botany, Charles University in Prague, Prague, Czech Republic
Center of Excellence in Fungal Research, Mae Fah Luang University, Chaing Rai, 57100, Thailand
Cornell University, 334 Plant Science Building, Ithaca, NY 14850, United States
Department of Health Sciences, Faculty of Medicine and Health Sciences, University of Mauritius, Reduit, Mauritius
Manaaki Whenua Landcare Research, Private Bag 92170, Auckland, 1142, New Zealand
EMSL Analytical, Inc., 200 Route 130 North, Cinnaminson, NJ 08077, United States
Department of Nutrition and Dietetics, Faculty of Health Sciences, Yeditepe University, Turkey
Department of Plant and Soil Sciences, University of Pretoria, P. Bag X20 Hatfield, Pretoria, 0002, South Africa
Institute of Environmental Biology, Ecology and Biodiversity, Utrecht University, Utrecht, 3584 CH, Netherlands
Laboratory for Biological Diversity, Ruder Boskovic Institute, Bijenicka cesta 54, Zagreb, HR-10000, Croatia
University of Veterinary Medicine, Vienna (VetMed), Institute of Food Safety, Food Technology and Veterinary Public Health, Veterinaerplatz 1, 1210 Vienna and BiMM – Bioactive Microbial Metabolites group, Tulln a.d. Donau, 3430, Austria
University of California, Davis, One Shields Ave., Davis, CA 95616, United States
Department of Agricultural Biological Chemistry, College of Agriculture & Life Sciences, Chonnam National University, Yongbong-Dong 300, Buk-Gu, Gwangju, 61186, South Korea
Ascofrance, 64 route de Chize, Villiers-en-Bois, 79360, France
The Key Laboratory of Molecular Biology of Crop Pathogens and Insects of Ministry of Agriculture, The Key Laboratory of Biology of Crop Pathogens and Insects of Zhejiang Province, Institute of Biotechnology, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China
V.N. Sukachev Institute of Forest SB RAS, Laboratory of Reforestation, Mycology and Plant Pathology, Krasnoyarsk, 660036, Russian Federation
Reshetnev Siberian State University of Science and Technology, Department of Chemical Technology of Wood and Biotechnology, Krasnoyarsk, 660037, Russian Federation
School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 611731, China
Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Ecosciences Precinct, G.P.O. Box 267, Brisbane, 4001, Australia
Department of Botany, Faculty of Science, Palacky University Olomouc, Slechtitelu 27, Olomouc, CZ-783 71, Czech Republic
Department of Agricultural, Food, Environmental and Forestry Science and Technology (DAGRI), Plant Pathology and Entomology section, University of Florence, P.le delle Cascine 28, Firenze, 50144, Italy
Graduate school of Bioresources, Mie University, Kurima-machiya 1577, Tsu, Mie 514-8507, Japan
Gothenburg Global Biodiversity Center at the Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, Gothenburg, 405 30, Sweden
Department of Microbiology and Biochemistry, Faculty of Natural and Life Sciences, University of Batna 2, Batna, 05000, Algeria
Laboratorio de Micodiversidad y Micoprospeccion, PROIMI-CONICET, Av. Belgrano y Pje. Caseros, Argentina
Universidade de Lisboa, Faculdade de Ciencias, Biosystems and Integrative Sciences Institute (BioISI), Campo Grande, Lisbon, 1749-016, Portugal
Microbial Screening Technologies, 28 Percival Rd, Smithfield, NSW 2164, Australia
Dipartimento di Agricoltura, Alimentazione e Ambiente, sez. Patologia vegetale, University of Catania, Via S. Sofia 100, Catania, 95123, Italy
Phytopathology, Van Zanten Breeding B.V., Lavendelweg 15, Rijsenhout, 1435 EW, Netherlands
National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology (Fungi) Group, Agharkar Research Institute, Pune, Maharashtra 411 004, India
Laboratory of Mycology and Phytopathology – (LAMFU), Department of Chemical and Food Engineering, Universidad de los Andes, Cr 1 # 18 a 12, Bogota, Colombia
Plant Pathology and Population Genetics, Laboratory of Microorganisms, National Gene Bank, Tunisia
Laboratory of Emerging Fungal Pathogens, Department of Microbiology, Immunology, and Parasitology, Discipline of Cellular Biology, Federal University of Sao Paulo (UNIFESP), Sao Paulo, 04023062, Brazil
USDA-ARS Mycology & Nematology Genetic Diversity & Biology Laboratory, Bldg. 010A, Rm. 212, BARC-West, 10300 Baltimore Ave, Beltsville, MD 20705, United States
Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Centro de Biociencias, Cidade Universitaria, Av. Prof. Moraes Rego, s/n, Recife, PE CEP: 50670-901, Brazil
Centre for Crop Health, University of Southern Queensland, Toowoomba, Queensland 4350, Australia
College of Plant Protection, Northwest A&F University, Yangling, Shaanxi, China
Faculty of Natural and Agricultural Sciences, Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein, 9300, South Africa
Queensland Plant Pathology Herbarium, Department of Agriculture and Fisheries, Dutton Park, Queensland 4102, Australia
Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh, EH3 5LR, United Kingdom
Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC 3010, Australia
Food and Wine Research Institute, Eszterhazy Karoly University, 6 Leanyka Street, Eger, H-3300, Hungary
Department of Life Sciences and Systems Biology, University of Torino and Institute for Sustainable Plant Protection (IPSP-SS Turin), C.N.R, Viale P.A. Mattioli, 25, Torino, I-10125, Italy
Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, 271018, China
Fitosanidad, Colegio de Postgraduados-Campus Montecillo, Montecillo-Texcoco, Edo. de Mexico 56230, Mexico
Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures GmbH, Inhoffenstrasse 7 B, Braunschweig, 38124, Germany
Museum of Evolution, Uppsala University, Norbyvagen 16, Uppsala, SE-752 36, Sweden
Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Biotechnology, College of Agriculture and Biotechnology, Zhejiang University, No. 866 Yuhangtang Road, Hangzhou, 310058, China
Goethe-University Frankfurt am Main, Department of Biological Sciences, Institute of Ecology, Evolution and Diversity, Max-von-Laue Str. 13, Frankfurt am Main, D-60438, Germany
LOEWE Centre for Translational Biodiversity Genomics, Georg-Voigt-Str. 14-16, Frankfurt am Main, D-60325, Germany
Доп.точки доступа:
Crous, P. W.; Lombard, L.; Sandoval-Denis, M.; Seifert, K. A.; Schroers, H. -J.; Chaverri, P.; Gene, J.; Guarro, J.; Hirooka, Y.; Bensch, K.; Kema, G. H.J.; Lamprecht, S. C.; Cai, L.; Rossman, A. Y.; Stadler, M.; Summerbell, R. C.; Taylor, J. W.; Ploch, S.; Visagie, C. M.; Yilmaz, N.; Frisvad, J. C.; Abdel-Azeem, A. M.; Abdollahzadeh, J.; Abdolrasouli, A.; Akulov, A.; Alberts, J. F.; Araujo, J. P.M.; Ariyawansa, H. A.; Bakhshi, M.; Bendiksby, M.; Ben Hadj Amor, A.; Bezerra, J. D.P.; Boekhout, T.; Camara, M. P.S.; Carbia, M.; Cardinali, G.; Castaneda-Ruiz, R. F.; Celis, A.; Chaturvedi, V.; Collemare, J.; Croll, D.; Damm, U.; Decock, C. A.; de Vries, R. P.; Ezekiel, C. N.; Fan, X. L.; Fernandez, N. B.; Gaya, E.; Gonzalez, C. D.; Gramaje, D.; Groenewald, J. Z.; Grube, M.; Guevara-Suarez, M.; Gupta, V. K.; Guarnaccia, V.; Haddaji, A.; Hagen, F.; Haelewaters, D.; Hansen, K.; Hashimoto, A.; Hernandez-Restrepo, M.; Houbraken, J.; Hubka, V.; Hyde, K. D.; Iturriaga, T.; Jeewon, R.; Johnston, P. R.; Jurjevic, Z.; Karalti, I.; Korsten, L.; Kuramae, E. E.; Kusan, I.; Labuda, R.; Lawrence, D. P.; Lee, H. B.; Lechat, C.; Li, H. Y.; Litovka, Y. A.; Maharachchikumbura, S. S.N.; Marin-Felix, Y.; Matio Kemkuignou, B.; Matocec, N.; McTaggart, A. R.; Mlcoch, P.; Mugnai, L.; Nakashima, C.; Nilsson, R. H.; Noumeur, S. R.; Pavlov, I. N.; Peralta, M. P.; Phillips, A. J.L.; Pitt, J. I.; Polizzi, G.; Quaedvlieg, W.; Rajeshkumar, K. C.; Restrepo, S.; Rhaiem, A.; Robert, J.; Robert, V.; Rodrigues, A. M.; Salgado-Salazar, C.; Samson, R. A.; Santos, A. C.S.; Shivas, R. G.; Souza-Motta, C. M.; Sun, G. Y.; Swart, W. J.; Szoke, S.; Tan, Y. P.; Taylor, J. E.; Taylor, P. W.J.; Tiago, P. V.; Vaczy, K. Z.; van de Wiele, N.; van der Merwe, N. A.; Verkley, G. J.M.; Vieira, W. A.S.; Vizzini, A.; Weir, B. S.; Wijayawardene, N. N.; Xia, J. W.; Yanez-Morales, M. J.; Yurkov, A.; Zamora, J. C.; Zare, R.; Zhang, C. L.; Thines, M.