Труды сотрудников ИЛ им. В.Н. Сукачева СО РАН

[Text] / O. V. Masyagina, S. G. Prokushkin, T. . Koike // Eurasian Soil Sci. - 2010. - Vol. 43, Is. 6. - P693-700, DOI 10.1134/S1064229310060104. - Cited References: 26. - The authors thank Prof. Takashi and Prof. Lai Qu from Hokkaido University for help in collecting the material. This study was supported by the Global Environmental Research Foundation of the Ministry of Environment of Japan and by the Russian Foundation for Basic Research (project nos. 03-04-48037 and 07-04-96812). . - 8. - ISSN 1064-2293РУБ Soil Science

Аннотация: The effects of cutting on the ecological conditions and soil respiration in larch forests of Japan were studied. The cutting was found to significantly change the soil surface, resulting in the high spatial and temporal variation of the hydrothermal conditions and soil respiration. The influence of a stand's thinning on the environment and soil respiration is considered using the example of the thinning of a ripening larch stand in the Tomakomai National Forest (Hokkaido Island, Japan). The changes in the hydrothermal conditions (the temperature and moisture of the mineral soil layers and litter) and some other factors (the root and litter density and the C/N ratio) after the thinning of the stands and their influence on the soil respiration were studied. The soil respiration in the thinned forest site did not differ from that on the control plot, whereas the soil temperature was much higher in the former. The moisture of the soil mineral layers and the litter was the same. Despite the latter fact, no significant relationships between the soil respiration and its temperature and moisture were found. In the area covered with the thinned forest, the water content of the litter turned out to be the main microclimatic factor affecting the soil respiration. There, the fine roots and litter density were 18 and 15 % less, respectively. The thinning of the stand induced high variation of the soil respiration and temperature, as well as of the fine roots and the litter density. On the whole, the soil respiration in the larch forest studied in Japan was determined by the litter stock and the C to N ratio.

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[Masyagina, O. V.
Prokushkin, S. G.] Russian Acad Sci, Siberian Branch, Sukachev Inst Forestry, Krasnoyarsk 660036, Russia
[Masyagina, O. V.
Koike, T.] Hokkaido Univ, Sapporo, Hokkaido 0608589, Japan

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Masyagina, O.V.; Prokushkin, S.G.; Koike, T...

[Текст] / D. L. Grodnitsky // Zhurnal Obshchei Biol. - 2000. - Vol. 61, Is. 4. - С. 371-380. - Cited References: 74 . - 10. - ISSN 0044-4596РУБ Biology

Аннотация: Neo-Darwinism is a result of synthesis of Darwinian concept of natural selection with Weismannian concept of germ plasm. The concept of germ plasm is based on a hypothesis that phenotypic traits are completely determined by genes. Hence, neo-Darwinism describes evolution as a process of alternation of ene frequencies under the effect of natural selection. This is an inadequate approach to the study of evolution. In the course of evolution, genes change their functions, whereas phenotypic characters change their corresponding genes. As a result, every step of evolutionary transformation changes the structure of phenotype-to-genotype correspondence. Therefore, phenotypic evolution cannot be described in genetic terms, the same as to human languages cannot be translated one into another whenever the meaning of words is constantly changing. Consequently, Weismannian germ-plasm concept adequately desribes the relation of characters to genes only during stasis, but is inapplicable to evolution.

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Держатели документа:
Russian Acad Sci, Siberian Branch, Sukachev Inst Forest Res, Krasnoyarsk 660036, Russia

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Grodnitsky, D.L.

[Text] / G. E. Rehfeldt [et al.] // Glob. Change Biol. - 2002. - Vol. 8, Is. 9. - P912-929, DOI 10.1046/j.1365-2486.2002.00516.x. - Cited References: 49 . - 18. - ISSN 1354-1013РУБ Biodiversity Conservation + Ecology + Environmental Sciences

Аннотация: Five population-specific response functions were developed from quadratic models for 110 populations of Pinus sylvestris growing at 47 planting sites in Eurasia and North America. The functions predict 13 year height from climate: degree-days > 5 degreesC; mean annual temperature; degree-days < 0 degreesC; summer-winter temperature differential; and a moisture index, the ratio of degree-days > 5 degreesC to mean annual precipitation. Validation of the response functions with two sets of independent data produced for all functions statistically significant simple correlations with coefficients as high as 0.81 between actual and predicted heights. The response functions described the widely different growth potentials typical of natural populations and demonstrated that these growth potentials have different climatic optima. Populations nonetheless tend to inhabit climates colder than their optima, with the disparity between the optimal and inhabited climates becoming greater as the climate becomes more severe. When driven by a global warming scenario of the Hadley Center, the functions described short-term physiologic and long-term evolutionary effects that were geographically complex. The short-term effects should be negative in the warmest climates but strongly positive in the coldest. Long-term effects eventually should ameliorate the negative short-term impacts, enhance the positive, and in time, substantially increase productivity throughout most of the contemporary pine forests of Eurasia. Realizing the long-term gains will require redistribution of genotypes across the landscape, a process that should take up to 13 generations and therefore many years.

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USDA, Forest Serv, Rocky Mt Res Stn, Moscow, ID 83843 USA
Russian Acad Sci, Sikachev Inst Forest, Siberian Branch, Krasnoyarsk 660036, Russia

Доп.точки доступа:
Rehfeldt, G.E.; Tchebakova, N.M.; Parfenova, Y.I.; Wykoff, W.R.; Kuzmina, N.A.; Milyutin, L.I.

[Текст] / D. L. GRODNITSKY // Zhurnal Obshchei Biol. - 1995. - Vol. 56, Is. 4. - С. 438-449. - Cited References: 64 . - 12. - ISSN 0044-4596РУБ Biology

Аннотация: Analogous structures can be considered as a result of the convergence of unrelated organisms formed by selection under the similar living conditions. The data on the analogous morphologlcal structures (distal fusion of anal veins, secondary vein-like sclerotization, some signes of wing planform, wrinkled veins, cover scales and wing eyes) on insect wings in different orders are provided. It is shown that the origin of these structures cannot be completely explained by the similarity of their functions. It seems also impossible to understand morphology only on the basis of a structure's function in art organism's life. The general approach to an organism's structure must include two independent (additive-according to Bohr) factors: selectional (the subject of the functional and ecological morphology) and morphogenetic (the subject of structuralism and constructional morphology).


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GRODNITSKY, D.L.

/ N. Kirichenko [et al.] // ZooKeys. - 2018. - Is. 736. - P79-118, DOI 10.3897/zookeys.736.20739. - Cited References:57. - We thank E.J. van Nieukerken (The Netherlands), H. Kuroko, A. Kawakita, N. Hirano, K. Niimi, M. Murase, S. Yagi, C. Tsuji (Japan), G. Deschka (Austria), M. Jones (USA), A. Lastuvka, Z. Lastuvka (Czech Republic), A. Cama, J. Nel (France) and P. van Wielink (The Netherlands) for providing specimens and / or DNA barcodes of Phyllocnistis spp., J.C. Koster (The Netherlands) for preparing the genitalia slide of P. cornella, C. van den Berg (The Netherlands) for helping with collection of P. cornella in Japan, S.V. Baryshnikova and M.G. Ponomarenko (Russia) for checking the collections of their institutes for Cornus-feeding Phyllocnistis and for their useful remarks. Special thanks to R. Brito and G.R.P Moreira (Brazil) for their careful reading of the latest version of our manuscript, to D. Lees (UK) for checking the English, to the reviewers R. Rougerie (France) and D. Wagner (USA) and to the editor E.J. van Nieukerken for their insightful comments and suggestions. N. Kirichenko was supported by a fellowship of LE STUDIUM (R), Institute for advanced studies - Loire Valley, France (grant No. INRA-URZF-007); French Embassy in Russia, Bourse Metchnikov (grant No. 908981L, Campus France) and by the Russian Foundation for Basic Research (grant No. 15-29-02645). T. Hirowatari. and I. Ohshima were supported by JSPS KAKENHI (grant No. JP16H05766). . - ISSN 1313-2989. - ISSN 1313-2970РУБ Zoology

Аннотация: During an ongoing DNA-barcoding campaign of the leaf-mining moths that feed on woody plants in Northeast Asia, four lineages of the genus Phyllocnistis (Gracillariidae, Phyllocnistinae) were discovered on dogwood (Cornus spp): P. cornella Ermolaev, 1987 on C. controversa Hemsl. (Japan: Hokkaido) and three new species - one feeding on C. controversa, C. florida L. and C. macrophylla Wall. in Japan (Honshu, Shikoku, Kyushu), a second species on C. macrophylla in China (Yunnan) and a third on Siberian dogwood Cornus alba L. in Russia (Siberia). All these species showed differences in morphology, in the barcode region of the cytochrome c oxidase I gene and in two nuclear genes (histone H3 and 28S ribosomal RNA). No correlation was found between the deep mitochondrial splits observed and the Wolbachia infection pattern. Based on both morphological and molecular evidence, the three recently discovered lineages are described here as new species: P. indistincta Kobayashi & Triberti, sp. n. (Japan), P. saepta Kirichenko, Ohshima & Huang, sp. n. (China) and P. verae Kirichenko, Triberti & Lopez-Vaamonde, sp. n. (Russia). In addition, the authors re-describe the adult morphology of P. cornella, provide the first record of this species from Japan and highlight the diagnostic characters that allow these Cornus-feeding Phyllocnistis species to be distinguished.

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RAS, Sukachev Inst Forest, SB, Akademgorodok 50-28, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, 79 Svobodny Pr, Krasnoyarsk 660041, Russia.
INRA, UR0633, Zool Forestiere, F-45075 Orleans, France.
Museo Civ Storia Nat, Lungadige Porta Vittoria 9, I-37129 Verona, Italy.
Osaka Prefecture Univ, Grad Sch Life & Environm Sci, Entomol Lab, Sakai, Osaka 5998531, Japan.
Kyushu Univ, Fac Agr, Entomol Lab, 6-10-1 Hakozaki, Fukuoka 8128581, Japan.
Univ Hawaii, Dept Plant & Environm Protect Sci, 3050 Maile Way, Honolulu, HI 96822 USA.
Nat Biodivers Ctr, POB 9557, NL-2300 RA Leiden, Netherlands.
Kyoto Prefectural Univ, Dept Life & Environm Sci, Kyoto 6068522, Japan.
Hunan Agr Univ, Hunan Prov Key Lab Biol & Control Plant Dis & Ins, Changsha 410128, Hunan, Peoples R China.
South China Agr Univ, Dept Entomol, Guangzhou 510642, Guangdong, Peoples R China.
Univ Francois Rabelais Tours, CNRS, Inst Rech Biol Insecte, UMR 7261,UFR Sci & Tech, F-37200 Tours, France.

Доп.точки доступа:
Kirichenko, Natalia; Triberti, Paolo; Kobayashi, Shigeki; Hirowatari, Toshiya; Doorenweerd, Camiel; Ohshima, Issei; Huang, Guo-Hua; Wang, Min; Magnoux, Emmanuelle; Lopez-Vaamonde, Carlos; LE STUDIUM(R), Institute for advanced studies - Loire Valley, France [INRA-URZF-007]; French Embassy in Russia, Bourse Metchnikov (Campus France) [908981L]; Russian Foundation for Basic Research [15-29-02645]; JSPS KAKENHI [JP16H05766]

/ I. V. Tikhonova, M. A. Koretz // Zhurnal Obshchei Biol. - 2019. - Vol. 80, Is. 1. - С. 68-80, DOI 10.1134/S0044459619010068. - Cited References:64 . - ISSN 0044-4596РУБ Biology

Аннотация: Climatic limits of adaptive reaction norm for 5 conifer species from Middle Siberia are determined using an analysis of variability in meteorological conditions during the last 50 years of trees' growing. Substantial inter-population differences within separate species are revealed with regard to the level of inter-seasonal variations of climatic factors. It is shown that for representatives of conifer species there occurs the species-specific contingency between territory occupation density and average annual indices of climatic factors and their inter annual variability. The least inter-population diversity is observed for Siberian fir and Siberian spruce when combining several climatic indices. The results of a study testify the necessity of maintaining the intra-species conifers structure aiming to preservation of inter-species diversity and stability of boreal forest ecosystems. It is pointed out that some populations of conifer species from the central part of their geographical range, as well as from the mountains of South Siberia, when being replaced at considerable distances, both in latitude and longitude, are capable to adapt well for new environmental conditions.

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RAS, Siberian Branch, Sukachev Inst Forest, West Siberian Branch, Zhukovsky St 100-1, Novosibirsk 630082, Russia.
RAS, Siberian Branch, Sukachev Inst Forest, Bld 50-28, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Kirensky St 79, Krasnoyarsk 660041, Russia.

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Tikhonova, I. V.; Koretz, M. A.

/ V. S. Akulova, V. V. Sharov, A. I. Aksyonova [et al.] // BMC Genomics. - 2020. - Vol. 21. - Ст. 534, DOI 10.1186/s12864-020-06964-6. - Cited References:48. - This work including the study and collection, analysis and interpretation of data, and writing the manuscript was supported by research grant. 14.Y26.31.0004 from the Government of the Russian Federation with partial funding from the Federal Research Center "Krasnoyarsk Scientific Center", Siberian Branch, Russian Academy of Sciences (grants No 0287-2019-0002, No 0356-2016-0704, and No 0356-2019-0024). The funding agencies played no role in the design of the study and collection material, analysis and interpretation of data, and in writing the manuscript. Publication cost have been funded by the Open Access Publication Funds of the University of Gottingen. . - ISSN 1471-2164РУБ Biotechnology & Applied Microbiology + Genetics & Heredity

Аннотация: Background: Massive forest decline has been observed almost everywhere as a result of negative anthropogenic and climatic effects, which can interact with pests, fungi and other phytopathogens and aggravate their effects. Climatic changes can weaken trees and make fungi, such as Armillaria more destructive. Armillaria borealis (Marxm. & Korhonen) is a fungus from the Physalacriaceae family (Basidiomycota) widely distributed in Eurasia, including Siberia and the Far East. Species from this genus cause the root white rot disease that weakens and often kills woody plants. However, little is known about ecological behavior and genetics of A. borealis. According to field research data, A. borealis is less pathogenic than A. ostoyae, and its aggressive behavior is quite rare. Mainly A. borealis behaves as a secondary pathogen killing trees already weakened by other factors. However, changing environment might cause unpredictable effects in fungus behavior. ResultsThe de novo genome assembly and annotation were performed for the A. borealis species for the first time and presented in this study. The A. borealis genome assembly contained similar to 68 Mbp and was comparable with similar to 60 and similar to 79.5 Mbp for the A. ostoyae and A. mellea genomes, respectively. The N50 for contigs equaled 50,544bp. Functional annotation analysis revealed 21,969 protein coding genes and provided data for further comparative analysis. Repetitive sequences were also identified. The main focus for further study and comparative analysis will be on the enzymes and regulatory factors associated with pathogenicity. ConclusionsPathogenic fungi such as Armillaria are currently one of the main problems in forest conservation. A comprehensive study of these species and their pathogenicity is of great importance and needs good genomic resources. The assembled genome of A. borealis presented in this study is of sufficiently good quality for further detailed comparative study on the composition of enzymes in other Armillaria species. There is also a fundamental problem with the identification and classification of species of the Armillaria genus, where the study of repetitive sequences in the genomes of basidiomycetes and their comparative analysis will help us identify more accurately taxonomy of these species and reveal their evolutionary relationships.

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Siberian Fed Univ, Inst Fundamental Biol & Biotechnol, Lab Forest Genom, Genome Res & Educ Ctr, Krasnoyarsk 660036, Russia.
Russian Acad Sci, Krasnoyarsk Sci Ctr, Siberian Branch, Lab Genom Res & Biotechnol,Fed Res Ctr, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Inst Space & Informat Technol, Dept High Performance Comp, Krasnoyarsk 660074, Russia.
Russian Acad Sci, Siberian Branch, VN Sukachev Inst Forest, Lab Forest Genet & Select, Krasnoyarsk 660036, Russia.
Natl Res Tech Univ, Dept Informat, Irkutsk 664074, Russia.
Russian Acad Sci, Siberian Branch, Limnol Inst, Irkutsk 664033, Russia.
Russian Acad Sci, Siberian Branch, VN Sukachev Inst Forest, Lab Reforestat Mycol & Plant Pathol, Krasnoyarsk 660036, Russia.
Reshetnev Siberian State Univ Sci & Technol, Dept Chem Technol Wood & Biotechnol, Krasnoyarsk 660049, Russia.
Georg August Univ Gottingen, Dept Forest Genet & Forest Tree Breeding, D-37077 Gottingen, Germany.
George August Univ Gottingen, Ctr Integrated Breeding Res, D-37075 Gottingen, Germany.
Russian Acad Sci, NI Vavilov Inst Gen Genet, Lab Populat Genet, Moscow 119333, Russia.
Texas A&M Univ, Dept Ecosyst Sci & Management, College Stn, TX 77843 USA.

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Akulova, Vasilina S.; Sharov, Vadim V.; Aksyonova, Anastasiya I.; Putintseva, Yuliya A.; Oreshkova, Natalya V.; Feranchuk, Sergey I.; Kuzmin, Dmitry A.; Pavlov, Igor N.; Litovka, Yulia A.; Krutovsky, Konstantin V.; Krutovsky, Konstantin; Government of the Russian Federation [14.Y26.31.0004]; Federal Research Center "Krasnoyarsk Scientific Center", Siberian Branch, Russian Academy of Sciences [0287-2019-0002, 0356-2016-0704, 0356-2019-0024]; University of Gottingen