Труды сотрудников ИЛ им. В.Н. Сукачева СО РАН

/ N. . Kirichenko [et al.] // Biol. Invasions. - 2013. - Vol. 15, Is. 9. - P2105-2113, DOI 10.1007/s10530-013-0436-9. - Cited References: 47. - We thank the managers and botanists of Swiss and Russian arboreta for their cooperation and help, Diethart Matthies for statistical advice, Melanie Bateman and two anonymous reviewers for their comments on the manuscript. This work was supported by the European Union project PRATIQUE (No. 212459), the Swiss National scientific foundation (NSF) (No. IZKOZ3-128854), the Grant of the President of the Russian Federation (MR-7049.2010.4), the Russian Foundation for Basic Research (Grant No. 12-04-31250) and the Krasnoyarsk regional fund of supporting scientific and technological activities (Grant No. 05/12). . - 9. - ISSN 1387-3547РУБ Biodiversity Conservation + Ecology

Аннотация: As predicted by the enemy release hypothesis, plants are supposedly less attacked by herbivores in their introduced range than in their native range. However, the nature of the natural enemies, in particular their degree of specificity may also affect the level of enemy escape. It is therefore expected that ectophagous invertebrate species, being generally considered as more generalists than endophagous species, are more prompt to colonise alien plants. In Swiss, Siberian and Russian Far East arboreta, we tested whether alien woody plants are less attacked by native herbivorous insects than native congeneric woody plant species. We also tested the hypothesis that leaf miners and gall makers show stronger preference for native woody plants than external leaf chewers. In all investigated regions, leaf miners and gall makers were more abundant and showed higher species richness on native woody plants than on congeneric alien plants. In contrast, external leaf chewers did not cause more damage to native plants than to alien plants, possibly because leaf chewers are, in general, less species specific than leaf miners and gall makers. These results, obtained over a very large number of plant-enemy systems, generally support the hypothesis that alien plants partly escape from phytophagous invertebrates but also show that different feeding guilds may react differently to the introduction of alien plants.

Полный текст,
WOS,
Scopus

Держатели документа:
[Kirichenko, Natalia
Baranchikov, Yuri] VN Sukachev Inst Forest SB RAS, Krasnoyarsk 660036, Russia
[Pere, Christelle
Schaffner, Urs
Kenis, Marc] CABI, CH-2800 Delemont, Switzerland
Институт леса им. В.Н. Сукачева Сибирского отделения Российской академии наук

Доп.точки доступа:
Kirichenko, N...; Pere, C...; Baranchikov, Y...; Schaffner, U...; Kenis, M...

/ V. S. Akulova, V. V. Sharov, A. I. Aksyonova [et al.] // BMC Genomics. - 2020. - Vol. 21. - Ст. 534, DOI 10.1186/s12864-020-06964-6. - Cited References:48. - This work including the study and collection, analysis and interpretation of data, and writing the manuscript was supported by research grant. 14.Y26.31.0004 from the Government of the Russian Federation with partial funding from the Federal Research Center "Krasnoyarsk Scientific Center", Siberian Branch, Russian Academy of Sciences (grants No 0287-2019-0002, No 0356-2016-0704, and No 0356-2019-0024). The funding agencies played no role in the design of the study and collection material, analysis and interpretation of data, and in writing the manuscript. Publication cost have been funded by the Open Access Publication Funds of the University of Gottingen. . - ISSN 1471-2164РУБ Biotechnology & Applied Microbiology + Genetics & Heredity

Аннотация: Background: Massive forest decline has been observed almost everywhere as a result of negative anthropogenic and climatic effects, which can interact with pests, fungi and other phytopathogens and aggravate their effects. Climatic changes can weaken trees and make fungi, such as Armillaria more destructive. Armillaria borealis (Marxm. & Korhonen) is a fungus from the Physalacriaceae family (Basidiomycota) widely distributed in Eurasia, including Siberia and the Far East. Species from this genus cause the root white rot disease that weakens and often kills woody plants. However, little is known about ecological behavior and genetics of A. borealis. According to field research data, A. borealis is less pathogenic than A. ostoyae, and its aggressive behavior is quite rare. Mainly A. borealis behaves as a secondary pathogen killing trees already weakened by other factors. However, changing environment might cause unpredictable effects in fungus behavior. ResultsThe de novo genome assembly and annotation were performed for the A. borealis species for the first time and presented in this study. The A. borealis genome assembly contained similar to 68 Mbp and was comparable with similar to 60 and similar to 79.5 Mbp for the A. ostoyae and A. mellea genomes, respectively. The N50 for contigs equaled 50,544bp. Functional annotation analysis revealed 21,969 protein coding genes and provided data for further comparative analysis. Repetitive sequences were also identified. The main focus for further study and comparative analysis will be on the enzymes and regulatory factors associated with pathogenicity. ConclusionsPathogenic fungi such as Armillaria are currently one of the main problems in forest conservation. A comprehensive study of these species and their pathogenicity is of great importance and needs good genomic resources. The assembled genome of A. borealis presented in this study is of sufficiently good quality for further detailed comparative study on the composition of enzymes in other Armillaria species. There is also a fundamental problem with the identification and classification of species of the Armillaria genus, where the study of repetitive sequences in the genomes of basidiomycetes and their comparative analysis will help us identify more accurately taxonomy of these species and reveal their evolutionary relationships.

WOS

Держатели документа:
Siberian Fed Univ, Inst Fundamental Biol & Biotechnol, Lab Forest Genom, Genome Res & Educ Ctr, Krasnoyarsk 660036, Russia.
Russian Acad Sci, Krasnoyarsk Sci Ctr, Siberian Branch, Lab Genom Res & Biotechnol,Fed Res Ctr, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Inst Space & Informat Technol, Dept High Performance Comp, Krasnoyarsk 660074, Russia.
Russian Acad Sci, Siberian Branch, VN Sukachev Inst Forest, Lab Forest Genet & Select, Krasnoyarsk 660036, Russia.
Natl Res Tech Univ, Dept Informat, Irkutsk 664074, Russia.
Russian Acad Sci, Siberian Branch, Limnol Inst, Irkutsk 664033, Russia.
Russian Acad Sci, Siberian Branch, VN Sukachev Inst Forest, Lab Reforestat Mycol & Plant Pathol, Krasnoyarsk 660036, Russia.
Reshetnev Siberian State Univ Sci & Technol, Dept Chem Technol Wood & Biotechnol, Krasnoyarsk 660049, Russia.
Georg August Univ Gottingen, Dept Forest Genet & Forest Tree Breeding, D-37077 Gottingen, Germany.
George August Univ Gottingen, Ctr Integrated Breeding Res, D-37075 Gottingen, Germany.
Russian Acad Sci, NI Vavilov Inst Gen Genet, Lab Populat Genet, Moscow 119333, Russia.
Texas A&M Univ, Dept Ecosyst Sci & Management, College Stn, TX 77843 USA.

Доп.точки доступа:
Akulova, Vasilina S.; Sharov, Vadim V.; Aksyonova, Anastasiya I.; Putintseva, Yuliya A.; Oreshkova, Natalya V.; Feranchuk, Sergey I.; Kuzmin, Dmitry A.; Pavlov, Igor N.; Litovka, Yulia A.; Krutovsky, Konstantin V.; Krutovsky, Konstantin; Government of the Russian Federation [14.Y26.31.0004]; Federal Research Center "Krasnoyarsk Scientific Center", Siberian Branch, Russian Academy of Sciences [0287-2019-0002, 0356-2016-0704, 0356-2019-0024]; University of Gottingen

/ I. Franic, S. Prospero, K. Adamson [et al.] // Sci. Data. - 2022. - Vol. 9, Is. 1. - Ст. 62, DOI 10.1038/s41597-022-01162-3. - Cited References:37. - We gratefully acknowledge the financial support of the Swiss National Science Foundation (Project C15.0081) grant number 174644 and the Swiss Federal Office for the Environment (Grant 00.0418.PZ/ P193-1077). This work was supported by COST Action "Global Warning" (FP1401). CABI is an international intergovernmental organisation, and R.E., M.K., H.L. and I.F. gratefully acknowledge the core financial support from our member countries (and lead agencies) including the United Kingdom (Foreign, Commonwealth & Development Office), China (Chinese Ministry of Agriculture and Rural Affairs), Australia (Australian Centre for International Agricultural Research), Canada (Agriculture and Agri-Food Canada), Netherlands (Directorate General for International Cooperation), and Switzerland (Swiss Agency for Development and Cooperation). See https://www.cabi.org/aboutcabi/who-we-work-with/key-donors/ for full details. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. M.B. and M.K.H. were financially supported by the Slovak Research and Development Agency (Project APVV-19-0116). H.B. would like to thank the botanist Jorge Capelo who helped with Myrtaceae identification and INIAV IP for supporting her contribution to this study. Contributions of M. de G. and B.P. were financed through Slovenian Research Agency (P4-0107) and by the Slovenian Ministry of Agriculture, Forestry and Food (Public Forestry Service). G.C, C.B.E. and A.F.M. were supported by OTKA 128008 research grant provided by the National Research, Development and Innovation Office. Contributions of K.A. and R.D. were supported by the Estonian Science Foundation grant PSG136. M.J.J., C.L.M. and H.P.R. were financially supported by the 15. Juni Fonden (Grant 2017-N-123). P.B., B.G. and M.Ka. were financially supported by the Ministry of Science and Higher Education of the Republic of Poland for the University of Agriculture in Krakow (SUB/040013-D019). C.N. was financially supported by the Slovak Research and Development Agency (Grant APVV-15-0531). N.K. was partially supported by Russian Foundation for Basic Research (Grants 15-29-02645, 19-04-01029). R.OH. was supported by funding from DAERA, and assistance from David Craig, AFBI. T.P. thanks the South African Department of Forestry, Fisheries and the Environment (DFFE) for funding noting that this publication does not necessarily represent the views or opinions of DFFE or its employees. In preparing the publication, materials of the bioresource scientific collection of the CSBG SB RAS "Collections of living plants indoors and outdoors" USU_440534 (Novosibirsk, Russia) were used. M.Z. was financially supported by Ministry of education, science and technological development of the Republic of Serbia (Contract 451-03-68/2020-14/200197). We acknowledge the Genetic Diversity Centre (GDC) at ETH Zurich for providing computational infrastructure and acknowledge the contribution of McGill University and Genome Quebec Innovation Center (Montreal, Quebec, Canada) for pair-end sequencing on Illumina MiSeq. . - ISSN 2052-4463РУБ Multidisciplinary Sciences

Аннотация: International trade in plants and climate change are two of the main factors causing damaging tree pests (i.e. fungi and insects) to spread into new areas. To mitigate these risks, a large-scale assessment of tree-associated fungi and insects is needed. We present records of endophytic fungi and insects in twigs of 17 angiosperm and gymnosperm genera, from 51 locations in 32 countries worldwide. Endophytic fungi were characterized by high-throughput sequencing of 352 samples from 145 tree species in 28 countries. Insects were reared from 227 samples of 109 tree species in 18 countries and sorted into taxonomic orders and feeding guilds. Herbivorous insects were grouped into morphospecies and were identified using molecular and morphological approaches. This dataset reveals the diversity of tree-associated taxa, as it contains 12,721 fungal Amplicon Sequence Variants and 208 herbivorous insect morphospecies, sampled across broad geographic and climatic gradients and for many tree species. This dataset will facilitate applied and fundamental studies on the distribution of fungal endophytes and insects in trees.

WOS

Держатели документа:
CABI, Delemont, Switzerland.
Swiss Fed Inst Forest Snow & Landscape Res WSL, Birmensdorf, Switzerland.
Univ Bern, Inst Plant Sci, Bern, Switzerland.
Estonian Univ Life Sci, Inst Forestry & Rural Engn, Tartu, Estonia.
Sapienza Univ Rome, Dept Environm Biol, Rome, Italy.
French Natl Res Inst Agr Food & Environm URZF INR, Forest Zool Res Unit, Orleans, France.
Hellen Agr Org Demeter, Forest Res Inst, Thessaloniki, Greece.
Meise Bot Garden, Meise, Belgium.
Slovak Acad Sci, Inst Forest Ecol, Nitra, Slovakia.
Natl Res Inst Rural Engn Water & Forests INRGREF, Ariana, Tunisia.
Agr Univ Krakow, Dept Forest Ecosyst Protect, Krakow, Poland.
Inst Nacl Invest Agr & Vet IP INIAV IP, Oeiras, Portugal.
ITQB NOVA, GREEN IT Bioresources Sustainabil, Oeiras, Portugal.
Silva Tarouca Res Inst Landscape & Ornamental Gar, Pruhonice, Czech Republic.
Norwegian Inst Bioecon Res, NIBIO, As, Norway.
NMBU Norwegian Univ Life Sci, As, Norway.
Murdoch Univ, Harry Butler Inst, Murdoch, WA, Australia.
Nat Res Ctr, Inst Bot, Vilnius, Lithuania.
Swedish Univ Agr Sci, Southern Swedish Forest Res Ctr, Alnarp, Sweden.
Inst Invest Forestales & Agr Bariloche INTA CONIC, San Carlos De Bariloche, Rio Negro, Argentina.
Clemson Univ, Dept Forestry & Environm Conservat, Clemson, SC USA.
Univ Sopron, Forest Res Inst, Dept Forest Protect, Matrafured, Hungary.
Ukrainian Res Inst Forestry & Forest Meliorat, Kharkiv, Ukraine.
Slovenian Forestry Inst, Ljubljana, Slovenia.
Univ Valladolid INIA, Sustainable Forest Management Res Inst, Palencia, Spain.
Univ Valladolid, Dept Vegetal Prod & Forest Resources, Palencia, Spain.
Isparta Univ Appl Sci, Isparta, Turkey.
La Trobe Univ, Sch Appl Syst Biol, Melbourne, Vic, Australia.
Agribio Ctr, Agr Victoria Res, Bundoora, Vic, Australia.
Ukrainian Res Inst Mt Forestry, Ivano Frankivsk, Ukraine.
Zhejiang A&F Univ, Coll Forestry & Biotechnol, Hangzhou, Peoples R China.
Swiss Fed Inst Technol, Inst Terr Ecosyst, Zurich, Switzerland.
Swiss Fed Inst Technol, Inst Agr Sci, Zurich, Switzerland.
Univ Copenhagen, Dept Geosci & Nat Resource Management, Copenhagen, Denmark.
Russian Acad Sci, Sukachev Inst Forest, Krasnoyarsk Sci Ctr SB RAS, Fed Res Ctr,Siberian Branch, Krasnoyarsk, Russia.
Siberian Fed Univ, Krasnoyarsk, Russia.
Croatian Forest Res Inst, Jastrebarsko, Croatia.
Ukrainian Natl Forestry Univ, Lvov, Ukraine.
Univ Montenegro, Biotech Fac, Podgorica, Montenegro.
CABI, Beijing, Peoples R China.
Fera Sci Ltd, Natl Agrifood Innovat Campus, York, N Yorkshire, England.
Royal Bot Gardens Victoria, Melbourne, Vic, Australia.
Minist Agr Nat & Food Qual, Netherlands Food & Consumers Prod Safety Author, Natl Plant Protect Org, Wageningen, Netherlands.
CNR, Natl Res Council, Inst Sustainable Plant Protect IPSP, Sesto Fiorentino, Italy.
Forestry Res Inst Zvolen, Natl Forest Ctr, Zvolen, Slovakia.
Dept Agr Food & Marine, Dublin, Ireland.
AgriFood & Biosciences Inst AFBI, Belfast, Antrim, North Ireland.
Cankiri Karatekin Univ, Fac Forestry, Cankiri, Turkey.
Univ Pretoria, Forestry & Agr Biotechnol Inst FABI, Pretoria, South Africa.
Tanzania Forestry Res Inst TAFORI, Lushoto, Tanzania.
Russian Acad Sci, Siberian Branch, Cent Siberian Bot Garden, Novosibirsk, Russia.
Nat Resources Inst Finland, Suonenjoki, Finland.
US Forest Serv, USDA, Southern Res Stn, Athens, GA USA.
Univ Tuscia, DIBAF, Viterbo, Italy.
Univ Georgia, DB Warnell Sch Forestry & Nat Resources, Athens, GA USA.
Linnaeus Univ, Forestry & Wood Technol, Vaxjo, Sweden.
Univ Novi Sad, Inst Lowland Forestry & Environm ILFE, Novi Sad, Serbia.
Kirstenbosch Res Ctr, South African Natl Biodivers Inst, Cape Town, South Africa.

Доп.точки доступа:
Franic, Iva; Prospero, Simone; Adamson, Kalev; Allan, Eric; Attorre, Fabio; Auger-Rozenberg, Marie Anne; Augustin, Sylvie; Avtzis, Dimitrios; Baert, Wim; Barta, Marek; Bauters, Kenneth; Bellahirech, Amani; Boron, Piotr; Braganca, Helena; Brestovanska, Tereza; Brurberg, May Bente; Burgess, Treena; Burokiene, Daiva; Cleary, Michelle; Corley, Juan; Coyle, David R.; Csoka, Gyorgy; Cerny, Karel; Davydenko, Kateryna; de Groot, Maarten; Diez, Julio Javier; Lehtijarvi, R.; Drenkhan, Rein; Edwards, Jacqueline; Elsafy, Mohammed; Eotvos, Csaba bela; Falko, Roman; Fan, Jianting; Feddern, Nina; Furjes-Miko, Agnes; Gossner, Martin M.; Grad, Bartlomiej; Hartmann, Martin; Havrdova, Ludmila; Horakova, Miriam Kadasi; Hrabetova, Marketa; Justesen, Mathias Just; Kacprzyk, Magdalena; Kenis, Marc; Kirichenko, Natalia; Kovac, Marta; Kramarets, Volodymyr; Lackovic, Nikola; Lantschner, Maria Victoria; Lazarevic, Jelena; Leskiv, Marianna; Li, Hongmei; Madsen, Corrie Lynne; Malumphy, Chris; Matosevic, Dinka; Matsiakh, Iryna; May, Tom W.; Meffert, Johan; Migliorini, Duccio; Nikolov, Christo; O'Hanlon, Richard; Oskay, Funda; Paap, Trudy; Parpan, Taras; Piskur, Barbara; Ravn, Hans Peter; Richard, John; Ronse, Anne; Roques, Alain; Ruffner, Beat; Sivickis, Karolis; Soliani, Carolina; Talgo, Venche; Tomoshevich, Maria; Uimari, Anne; Ulyshen, Michael; Vettraino, Anna Maria; Villari, Caterina; Wang, Yongjun; Witzell, Johanna; Zlatkovic, Milica; Eschen, Rene; Diez, Julio; Braganca, Maria Helena Pires; Swiss National Science FoundationSwiss National Science Foundation (SNSF)European Commission [C15.0081, 174644]; Swiss Federal Office for the Environment [00.0418.PZ/ P193-1077]; COST Action "Global Warning" [FP1401]; United Kingdom (Foreign, Commonwealth & Development Office); China (Chinese Ministry of Agriculture and Rural Affairs); Australia (Australian Centre for International Agricultural Research); Canada (Agriculture and Agri-Food Canada); Netherlands (Directorate General for International Cooperation); Switzerland (Swiss Agency for Development and Cooperation); Slovak Research and Development AgencySlovak Research and Development Agency [APVV-19-0116, APVV-15-0531]; Slovenian Research AgencySlovenian Research Agency - Slovenia [P4-0107]; Slovenian Ministry of Agriculture, Forestry and Food (Public Forestry Service); OTKA by the National Research, Development and Innovation Office [128008]; Estonian Science Foundation grant [PSG136]; 15. Juni Fonden [2017-N-123]; Ministry of Science and Higher Education of the Republic of PolandMinistry of Science and Higher Education, Poland [SUB/040013-D019]; Russian Foundation for Basic ResearchRussian Foundation for Basic Research (RFBR) [15-29-02645, 19-04-01029]; DAERA; South African Department of Forestry, Fisheries and the Environment (DFFE); Ministry of education, science and technological development of the Republic of SerbiaMinistry of Education, Science & Technological Development, Serbia [451-03-68/2020-14/200197]