Труды сотрудников ИЛ им. В.Н. Сукачева СО РАН

[Text] / S. . Mori [et al.] // Proc. Natl. Acad. Sci. U. S. A. - 2010. - Vol. 107, Is. 4. - P1447-1451, DOI 10.1073/pnas.0902554107. - Cited References: 48. - We thank K. Kikuzawa, K. Hozumi, J. H. Brown, and two anonymous reviewers for helpful comments and discussions regarding the manuscript, and the Forestry Technology Center of the Tohoku Regional Forest Office of the Japan Forestry Agency for field support. This research was partially supported by the Japan Ministry of Education, Culture, Sports, Science and Technology (MEXT) Grant-in-Aid Scientific Research (B) 18380098 (FY2006-2008), the Japan Ministry of Environment Project B-2 (FY1997-2000), and the Japan Forestry and Forest Products Research Institute Research Grant 200608 (FY1996-2010). . - 5. - ISSN 0027-8424РУБ Multidisciplinary Sciences

Аннотация: The scaling of respiratory metabolism with body mass is one of the most pervasive phenomena in biology. Using a single allometric equation to characterize empirical scaling relationships and to evaluate alternative hypotheses about mechanisms has been controversial. We developed a method to directly measure respiration of 271 whole plants, spanning nine orders of magnitude in body mass, from small seedlings to large trees, and from tropical to boreal ecosystems. Our measurements include the roots, which have often been ignored. Rather than a single power-law relationship, our data are fit by a biphasic, mixed-power function. The allometric exponent varies continuously from 1 in the smallest plants to 3/4 in larger saplings and trees. Therefore, our findings support the recent findings of Reich et al. [Reich PB, Tjoelker MG, Machado JL, Oleksyn J (2006) Universal scaling of respiratory metabolism, size, and nitrogen in plants. Nature 439: 457-461] and West, Brown, and Enquist [West GB, Brown JH, Enquist BJ (1997) A general model for the origin of allometric scaling laws in biology. Science 276: 122 - 126.]. The transition from linear to 3/4-power scaling may indicate fundamental physical and physiological constraints on the allocation of plant biomass between photosynthetic and nonphotosynthetic organs over the course of ontogenetic plant growth.

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Держатели документа:
[Mori, Shigeta
Ishida, Atsushi
Nishizono, Tomohiro
Kajimoto, Takuya
Matsuura, Yojiro
Toma, Takeshi
Awaya, Yoshio
Araki, Masatake G.
Kawasaki, Tatsuro
Chiba, Yukihiro] Forestry & Forest Prod Res Inst, Tsukuba, Ibaraki 3058687, Japan
[Yamaji, Keiko] Univ Tsukuba, Tsukuba, Ibaraki 3058571, Japan
[Prokushkin, Stanislav G.
Masyagina, Oxana V.] VN Sukachev Inst Forest SB RAS, Krasnoyarsk 660036, Russia
[Hagihara, Akio
Hoque, A. T. M. Rafiqul
Suwa, Rempei
Zyryanova, Olga A.
Abaimov, Anatoly P.] Univ Ryukyus, Nishihara, Okinawa 9030213, Japan
[Osawa, Akira] Kyoto Univ, Kyoto 6068502, Japan
[Ueda, Tatsushiro] Dalton Co Ltd, Sapporo, Hokkaido 0600808, Japan
[Kinjo, Masaru
Miyagi, Tsuyoshi] Okinawa Prefectural Forest Resources Res Ctr, Nago 9050017, Japan
[Koike, Takayoshi] Hokkaido Univ, Sapporo, Hokkaido 0608689, Japan
[Umari, Marjnah] Mulawarman Univ, Kota Samarinda 75119, Indonesia

Доп.точки доступа:
Mori, S...; Yamaji, K...; Ishida, A...; Prokushkin, S.G.; Masyagina, O.V.; Hagihara, A...; Hoque, ATMR; Suwa, R...; Osawa, A...; Nishizono, T...; Ueda, T...; Kinjo, M...; Miyagi, T...; Kajimoto, T...; Koike, T...; Matsuura, Y...; Toma, T...; Zyryanova, O.A.; Abaimov, A.P.; Абаимов Анатолий Платонович; Awaya, Y...; Araki, M.G.; Kawasaki, T...; Chiba, Y...; Umari, M...

[Text] / A. . Osawa, A. P. Abaimov, O. A. Zyryanova // Can. J. For. Res.-Rev. Can. Rech. For. - 2000. - Vol. 30, Is. 4. - P580-588, DOI 10.1139/cjfr-30-4-580. - Cited References: 32 . - 9. - ISSN 0045-5067РУБ Forestry

Аннотация: A method was proposed for quantitatively reconstructing structural development over time of even-aged monospecific forests and was applied to a larch (Larix gmelinii (Rupr.) Rupr.) stand in Siberia. It relies on samples obtained at one-time observation and some simple assumptions considered general in even-aged stands. Tree-ring data taken from breast height of a group of the largest trees and those measured at various stem heights of several individuals representing the range of tree sizes in the plot are used for the estimation. Stand density and parameters of stem volume distribution at a given time in the past were calculated with the "stem slenderness index," and with an assumption of the -3/2 power distribution for the distribution function of stem size, respectively. By developing time-dependent allometric relationships for individual tree attributes, the whole-stand values of stem volume and its increment were reconstructed for several decades of stand development. Estimated history of the changes in stand density, total stem volume, and stem volume growth for the dense larch stand examined, mostly agreed with a separate estimation by the self-thinning assumption.

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Держатели документа:
Ryukoku Univ, Fac Intercultural Commun, Ohtsu, Shiga 5202194, Japan
Russian Acad Sci, VN Sukachev Inst Forest, Siberian Branch, Krasnoyarsk 660036, Russia

Доп.точки доступа:
Osawa, A...; Abaimov, A.P.; Zyryanova, O.A.

[Текст] / D. L. Grodnitsky // Zhurnal Obshchei Biol. - 1998. - Vol. 59, Is. 6. - С. 617-622. - Cited References: 117 . - 17. - ISSN 0044-4596РУБ Biology

Аннотация: The development of certain form depends on natural selection and morphogenesis. The former process is resulted in analogies - characters of convergent similarity, while the latter can lead to non-adaptive parallel similarity of relatives (homologous series of N.I. Vavilov). Morphogenetic factor is shaped by past selection but does not depend on it at each new evolution act: spectrum of forms that can be produced is totally determined by embryological mechanisms and precedes the beginning of an evolutionary change. Mutual independence of two factors allows to use Bohr's correspondence principle. According to this principle any explanation is not full: it has its own competence area with its own rules for conclusions; there is no rules for logic transition between groups of accidental events; interaction of factors is expressed only as a limitation of their pattern formation abilities. To diminish uncertainty one can use the principle of evolution stabilisation of function by N.V. Kokshaisky, i.e. statement that functions of organism level are kept stable in the process of evolution while some changes at the lower levels are possible. The higher level of changes, the more complete reconstruction takes place in organism. The direction of evolution is minimisation of total sum of changes. As a consequence, the higher hierarchical level of function, more adaptive characters are belonged to its structures. And opposite, the lower hierarchical level, the more freedom for morphogenetic changes, the form of structures becomes indifferent for selection. Therefore the characters of high hierarchical levels can be explained in terms of adaptation, while the features of low level - on the base of morphogenetic peculiarities.

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Держатели документа:
Russian Acad Sci, Siberian Branch, VN Sukachev Inst Forest Res, Krasnoyarsk 660036, Russia

Доп.точки доступа:
Grodnitsky, D.L.

/ D. A. Kuzmin [et al.] // BMC Bioinformatics. - 2019. - Vol. 20: 11th International Multiconference on Bioinformatics of Genome (AUG 20-25, 2018, Novosibirsk, RUSSIA). - Ст. 37, DOI 10.1186/s12859-018-2570-y. - Cited References:32. - This study was funded by a research grant No. 14.Y26.31.0004 from the Government of the Russian Federation. No funding agency played any role in the design or conclusion of this study. Publication costs are funded by the BioMed Central Membership of the University of Gottingen. . - ISSN 1471-2105РУБ Biochemical Research Methods + Biotechnology & Applied Microbiology

Аннотация: BackgroundDe novo assembling of large genomes, such as in conifers (similar to 12-30 Gbp), which also consist of similar to 80% of repetitive DNA, is a very complex and computationally intense endeavor. One of the main problems in assembling such genomes lays in computing limitations of nucleotide sequence assembly programs (DNA assemblers). As a rule, modern assemblers are usually designed to assemble genomes with a length not exceeding the length of the human genome (3.24 Gbp). Most assemblers cannot handle the amount of input sequence data required to provide sufficient coverage needed for a high-quality assembly.ResultsAn original stepwise method of de novo assembly by parts (sets), which allows to bypass the limitations of modern assemblers associated with a huge amount of data being processed, is presented in this paper. The results of numerical assembling experiments conducted using the model plant Arabidopsis thaliana, Prunus persica (peach) and four most popular assemblers, ABySS, SOAPdenovo, SPAdes, and CLC Assembly Cell, showed the validity and effectiveness of the proposed stepwise assembling method.ConclusionUsing the new stepwise de novo assembling method presented in the paper, the genome of Siberian larch, Larix sibirica Ledeb. (12.34 Gbp) was completely assembled de novo by the CLC Assembly Cell assembler. It is the first genome assembly for larch species in addition to only five other conifer genomes sequenced and assembled for Picea abies, Picea glauca, Pinus taeda, Pinus lambertiana, and Pseudotsuga menziesii var. menziesii.

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Держатели документа:
Siberian Fed Univ, Genome Res & Educ Ctr, Lab Forest Genom, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Inst Space & Informat Technol, Dept High Performance Comp, Krasnoyarsk 660074, Russia.
Natl Res Tech Univ, Dept Informat, Irkutsk 664074, Russia.
Russian Acad Sci, Limnol Inst, Siberian Branch, Irkutsk 664033, Russia.
Russian Acad Sci, VN Sukachev Inst Forest, Lab Forest Genet & Select, Siberian Branch, Krasnoyarsk 660036, Russia.
Georg August Univ Gottingen, Dept Forest Genet & Forest Tree Breeding, D-37077 Gottingen, Germany.
Russian Acad Sci, NI Vavilov Inst Gen Genet, Lab Populat Genet, Moscow 119333, Russia.
Texas A&M Univ, Dept Ecosyst Sci & Management, College Stn, TX 77843 USA.

Доп.точки доступа:
Kuzmin, Dmitry A.; Feranchuk, Sergey I.; Sharov, Vadim V.; Cybin, Alexander N.; Makolov, Stepan V.; Putintseva, Yuliya A.; Oreshkova, Natalya V.; Krutovsky, Konstantin V.; Krutovsky, Konstantin; Government of the Russian Federation - BioMed Central Membership of the University of Gottingen [14, Y26.31.0004]

/ S. F. Gouveia, J. G. Rubalcaba, V. Soukhovolsky [et al.] // Ecol. Model. - 2020. - Vol. 424. - Ст. 109032, DOI 10.1016/j.ecolmodel.2020.109032. - Cited References:58. - We thank the kind audience of the Symposium `Applications of theoretical physics in ecology' during the 22nd Biennial Conference of The International Society for Ecological Modelling (ISEM), at Salzburg, Austria, for their feedback to the talks that resulted in this work. This work was supported by an Institute Serrapilheira grant provided to SFG (G-1709-18372) and INCT Ecology, Evolution, and Conservation of Biodiversity -EECBio (CNPq/FAPEG, grant 380733/2017-0). SFG also thanks CNPq (grants 451863/2019-4, 303180/2016-1, and 402469/2016-0) and CAPES/FAPITEC (grants 88881.157451/2017-01 and 88881.157961/2017-01). The work of VS and OT is supported by the Russian Foundation of Basic Research (grant 18-04-00119), and the work of RR by the Spanish Ministry of Economy, Industry, and Competitiveness (grant CGL2016-76747-R) and ERDF Funds. . - ISSN 0304-3800. - ISSN 1872-7026РУБ Ecology

Аннотация: Physics and ecology focus on different domains of nature and have developed under distinct scientific paradigms. Still, both share critical features, such as dealing with systems of irreducible complexity and inherent uncertainty at a fundamental level. Physics has embraced such complexity earlier and has devised robust analytical approaches to describe general principles of its systems, a path that ecosystem ecology has tracked, but organism-based ecology has only started to. Here, we outline approaches from physics - from classical to quantum mechanics - to address ecological questions that deal with emergent patterns of biodiversity, such as species' distribution, niche, and trait variation, which are of particular interest to community ecology, biogeography, and macroecology. These approaches can be further extended, which would provide these fields with a rationale common to other scientific fields within and outside ecology.

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Держатели документа:
Univ Fed Sergipe, Dept Ecol, Sao Cristovao, Sergipe, Brazil.
Univ Montana, Div Biol Sci, Missoula, MT 59812 USA.
VN Sukachev Inst Forest SB RAS, Krasnoyarsk, Russia.
Siberian Fed Univ, Krasnoyarsk, Russia.
Univ Evora CIBIO InBIO UE, Res Ctr Biodivers & Genet Resources, Evora, Portugal.
Univ Malaga, Fac Sci, Dept Anim Biol, Biogeog Divers & Conservat Res Team, Malaga, Spain.

Доп.точки доступа:
Gouveia, Sidney F.; Rubalcaba, Juan G.; Soukhovolsky, Vladislav; Tarasova, Olga; Barbosa, A. Marcia; Real, Raimundo; Institute Serrapilheira [G-1709-18372]; INCT Ecology, Evolution, and Conservation of Biodiversity -EECBio (CNPq/FAPEG) [380733/2017-0]; CNPqNational Council for Scientific and Technological Development (CNPq) [451863/2019-4, 303180/2016-1, 402469/2016-0]; CAPES/FAPITEC [88881.157451/2017-01, 88881.157961/2017-01]; Russian Foundation of Basic ResearchRussian Foundation for Basic Research (RFBR) [18-04-00119]; Spanish Ministry of Economy, Industry, and Competitiveness [CGL2016-76747-R]; ERDF Funds

/ I. D. Grodnitskaya, G. V. Kuznetsova, O. E. Pashkeeva, G. I. Antonov // Biol. Bull. - 2021. - Vol. 48, Is. 4. - P425-439, DOI 10.1134/S1062359021030067. - Cited References:35. - This work was supported by the Russian Foundation for Basic Research, project no. 13-04-01671. . - ISSN 1062-3590. - ISSN 1608-3059РУБ Biology

Аннотация: The effect of pine provenance trials of Pinus sibirica Du Tour and Pinus koraiensis Siebold et Zucc. grown in Krasnoyarsk and Khabarovsk krais on the chemical and biological parameters of gray forest and brown forest soils in the rhizosphere and between rows of plantations is compared. It is shown that the interspecies heterogeneity of pines affects the chemical composition of the soil, the enzymatic and microbiological activity, and the formation of prokaryotic microbiomes. It is noted that the biodiversity of prokaryotes is more strongly determined by the features of soil types than by the inter- and intraspecies heterogeneity of pines and by the effect of their roots. The phyla Proteobacteria, Acidobacteria, and Actinobacteria dominate in both soil types and together account for 75-85% of the total number of type-specific 16S rRNA gene sequences in each soil.

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Держатели документа:
Russian Acad Sci, Sukachev Inst Forests, Siberian Branch, Krasnoyarsk 660036, Russia.

Доп.точки доступа:
Grodnitskaya, I. D.; Kuznetsova, G., V; Pashkeeva, O. E.; Antonov, G., I; Russian Foundation for Basic ResearchRussian Foundation for Basic Research (RFBR) [13-04-01671]