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Найдено документов в текущей БД: 2

    Genome structure of organelles strongly relates to taxonomy of bearers
/ M. Sadovsky [et al.] // Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). - 2015. - Vol. 9043: 3rd International Work Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2015; Granada; Spain; 15 April 2015 through 17 April 2015; Code 125929. - P481-490 . -

Кл.слова (ненормированные):
Cluster -- Elastic map -- Evolution -- Frequency -- Morphology -- Order -- Similitude -- Synchrony -- Triplet -- Bioinformatics -- Biology -- Biomedical engineering -- Morphology -- Taxonomies -- Cluster -- Evolution -- Frequency -- Order -- Similitude -- Synchrony -- Triplet -- Genes

Аннотация: We studied the relations between the triplet frequency dictionaries of organelle genome, and the phylogeny of their bearers. The clusters in 63-dimensional space were identified through K-means, and the clade composition of those clusters has been investigated. Very high regularity in genomes distribution among the clusters was found, in terms of taxonomy. The strong synchrony in evolution of nuclear and organelle genomes manifests through this correlation: the proximity in frequency space was determined over the organelle genomes, while the proximity in taxonomy was determined morphologically. Similar effect is also found in the ensembles of other (say, yeast) genomes. © Springer International Publishing Switzerland 2015.

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Держатели документа:
Institute of Computational Modelling of SB RAS, Akademgorodok, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Sadovsky, M.G.; Садовский, Михаил Георгиевич; Putintseva, Y.; Chernyshova, A.; Fedotova, V.
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    Function vs. Taxonomy: The Case of Fungi Mitochondria ATP Synthase Genes
/ M. Sadovsky [et al.] // (8 May 2019 through 10 May 2019 : Springer Verlag, 2019. - Vol. 11465 LNBI. - P335-345, DOI 10.1007/978-3-030-17938-0_30 . -

Кл.слова (ненормированные):
Clustering -- Elastic map -- Evolution -- K-means -- Order -- Stability -- Bioinformatics -- Biomedical engineering -- Convergence of numerical methods -- Genes -- Mitochondria -- Taxonomies -- ATP synthase -- Clustering -- Evolution -- K-means -- Metric spaces -- Mitochondrial genomes -- Order -- K-means clustering

Аннотация: We studied the relations between triplet composition of the family of mitochondrial atp6, atp8 and atp9 genes, their function, and taxonomy of the bearers. The points in 64-dimensional metric space corresponding to genes have been clustered. It was found the points are separated into three clusters corresponding to those genes. 223 mitochondrial genomes have been enrolled into the database. © 2019, Springer Nature Switzerland AG.

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Держатели документа:
Institute of Computational Modelling of SB RAS, Akademgorodok, Krasnoyarsk, 660036, Russian Federation
Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prosp., 79, Krasnoyarsk, 660049, Russian Federation
Laboratory of Genomics and Biotechnology, Federal Research Center RAS, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Sadovsky, M.; Fedotovskaya, V.; Kolesnikova, A.; Shpagina, T.; Putintseva, Y.
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