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[Text] / S.N. Genova [et al.] // Aquat. Ecol. - 2010. - Vol. 44, Is. 3. - pp. 571-584, DOI 10.1007/s10452-010-9327-7. - Cited References: 26. - The study was financially supported by the Netherlands Organization for Scientific Research (NOW), Grant 047.011.2004.030; RFBR, Grant 05-05-89002; RFBR, Grant 07-01-00153; Multidisciplinary integration project of SB RAS No. 95. . - ISSN 1386-2588РУБ Ecology + Limnology + Marine & Freshwater Biology

Аннотация: In meromictic lakes such as Lake Shira, horizontal inhomogeneity is small in comparison with vertical gradients. To determine the vertical distribution of temperature, salinity, and density of water in a deep zone of a Lake Shira, or other saline lakes, a one-dimensional (in vertical direction) mathematical model is presented. A special feature of this model is that it takes into account the process of ice formation. The model of ice formation is based on the one-phase Stefan problem with the linear temperature distribution in the solid phase. A convective mixed layer is formed under an ice cover due to salt extraction in the ice formation process. To obtain analytical solutions for the vertical distribution of temperature, salinity, and density of water, we use a scheme of vertical structure in the form of several layers. In spring, the ice melts as top and bottom. These processes are taken into account in the model. The calculated profiles of salinity and temperature of Shira Lake are in good agreement with field measurement data for each season. Additionally, we focussed on the redox zone, which is the zone in which the aerobic layers of a water column meet the anaerobic ones. Hyperactivity of plankton communities is observed in this zone in lakes with hydrogen sulphide monimolimnion, and Lake Shira is among them. The location of the redox zone in the lake, which is estimated from field measurements, coincides with a sharp increase in density (the pycnocline) during autumn and winter. During spring and summer, the redox zone is deeper than the pycnocline. The location of pycnocline calculated with the hydro physical model is in good agreement with field measurement data.


Доп.точки доступа:
Genova, S.N.; Генова, Светлана Николаевна; Belolipetskii, V.M.; Белолипецкий, Виктор Михайлович; Rogozin, D.Y.; Degermendzhy, A.G.; Mooij, W.M.

/ M. G. Sadovsky, M. Y. Senashova, A. V. Malyshev // BMC Bioinformatics. - 2020. - Vol. 21. - Ст. 83, DOI 10.1186/s12859-020-3350-z. - Cited References:45 . - ISSN 1471-2105РУБ Biochemical Research Methods + Biotechnology & Applied Microbiology

Аннотация: Background Previously, a seven-cluster pattern claiming to be a universal one in bacterial genomes has been reported. Keeping in mind the most popular theory of chloroplast origin, we checked whether a similar pattern is observed in chloroplast genomes. Results Surprisingly, eight cluster structure has been found, for chloroplasts. The pattern observed for chloroplasts differs rather significantly, from bacterial one, and from that latter observed for cyanobacteria. The structure is provided by clustering of the fragments of equal length isolated within a genome so that each fragment is converted in triplet frequency dictionary with non-overlapping triplets with no gaps in frame tiling. The points in 63-dimensional space were clustered due to elastic map technique. The eight cluster found in chloroplasts comprises the fragments of a genome bearing tRNA genes and exhibiting excessively high GC-content, in comparison to the entire genome. Conclusion Chloroplasts exhibit very specific symmetry type in distribution of coding and non-coding fragments of a genome in the space of triplet frequencies: this is mirror symmetry. Cyanobacteria may have both mirror symmetry, and the rotational symmetry typical for other bacteria.

WOS

Держатели документа:
RAS, SB, Inst Computat Modelling, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Svobodny Prosp 79, Krasnoyarsk 660041, Russia.
VF Voino Yasenetsky Krasnoyarsk State Med Univ, P Zheleznjaka Str 1, Krasnoyarsk 660022, Russia.

Доп.точки доступа:
Sadovsky, Michael G.; Senashova, Maria Yu; Malyshev, Andrew V.