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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Mooij W.M., Trolle D., Jeppesen E., Arhonditsis G., Belolipetsky P.V., Chitamwebwa D.B.R., Degermendzhy A.G., DeAngelis D.L., De Senerpont Domis L.N., Downing A.S., Elliott J.A., Fragoso Jr. C.R., Gaedke U., Genova S.N., Gulati R.D., Hakanson L., Hamilton D.P., Hipsey M.R., 't Hoen J., Hulsmann S., Los F.H., Makler-Pick V., Petzoldt T., Prokopkin I.G., Rinke K., Schep S.A., Tominaga K., van Dam A.A., van Nes E.H., Wells S.A., Janse J.H.
Заглавие : Challenges and opportunities for integrating lake ecosystem modelling approaches
Место публикации : Aquatic Ecology. - 2010. - Vol. 44, Is. 3. - С. 633-667. - ISSN 13862588 (ISSN) , DOI 10.1007/s10452-010-9339-3
Ключевые слова (''Своб.индексиров.''): adaptive processes--analysis--aquatic--bifurcation--biodiversity--climate warming--community--eutrophication--fisheries--food web dynamics--freshwater--global change--hydrology--lake--management--marine--mitigation--model integration--model limitations--non-linear dynamics--nutrients--plankton--population--prediction--spatial--understanding--adaptive management--algorithm--aquatic community--biodiversity--ecosystem modeling--eutrophication--fishery production--food web--fuzzy mathematics--global warming--hydrology--lake ecosystem--mitigation--model test--numerical model--nutrient availability--plankton--prediction--saline lake--spatial analysis
Аннотация: A large number and wide variety of lake ecosystem models have been developed and published during the past four decades. We identify two challenges for making further progress in this field. One such challenge is to avoid developing more models largely following the concept of others ('reinventing the wheel'). The other challenge is to avoid focusing on only one type of model, while ignoring new and diverse approaches that have become available ('having tunnel vision'). In this paper, we aim at improving the awareness of existing models and knowledge of concurrent approaches in lake ecosystem modelling, without covering all possible model tools and avenues. First, we present a broad variety of modelling approaches. To illustrate these approaches, we give brief descriptions of rather arbitrarily selected sets of specific models. We deal with static models (steady state and regression models), complex dynamic models (CAEDYM, CE-QUAL-W2, Delft 3D-ECO, LakeMab, LakeWeb, MyLake, PCLake, PROTECH, SALMO), structurally dynamic models and minimal dynamic models. We also discuss a group of approaches that could all be classified as individual based: super-individual models (Piscator, Charisma), physiologically structured models, stage-structured models and trait-based models. We briefly mention genetic algorithms, neural networks, Kalman filters and fuzzy logic. Thereafter, we zoom in, as an in-depth example, on the multi-decadal development and application of the lake ecosystem model PCLake and related models (PCLake Metamodel, Lake Shira Model, IPH-TRIM3D-PCLake). In the discussion, we argue that while the historical development of each approach and model is understandable given its 'leading principle', there are many opportunities for combining approaches. We take the point of view that a single 'right' approach does not exist and should not be strived for. Instead, multiple modelling approaches, applied concurrently to a given problem, can help develop an integrative view on the functioning of lake ecosystems. We end with a set of specific recommendations that may be of help in the further development of lake ecosystem models. В© 2010 The Author(s).
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Nekrasov V.M., Chernychev A.V., Degermendzhy A.G.
Заглавие : The "quantization" of sensitivity coefficients is preserved in microbial populations heterogeneous with respect to growth rate and age
Место публикации : Doklady Biological Sciences. - 2006. - Vol. 406, Is. 1-6. - С. 91-93. - ISSN 00124966 (ISSN) , DOI 10.1134/S0012496606010261
Ключевые слова (''Своб.индексиров.''): algorithm--article--bacterium--biodiversity--growth, development and aging--population dynamics--theoretical model--time--algorithms--bacteria--biodiversity--models, theoretical--population dynamics--time factors
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Prokopkin I.G., Gubanov V.G., Gladyshev M.I.
Заглавие : Modelling the effect of planktivorous fish removal in a reservoir on the biomass of cyanobacteria
Место публикации : Ecological Modelling. - 2006. - Vol. 190, Is. 3-4. - С. 419-431. - ISSN 03043800 (ISSN) , DOI 10.1016/j.ecolmodel.2005.05.011
Ключевые слова (''Своб.индексиров.''): biomanipulation--cyanobacteria--ecological mathematical model--viable gut passage--bacteria--biodiversity--biomass--ecosystems--rivers--cyanobacteria--fishes--viable gut passage--ecology--algal bloom--community dynamics--modeling--planktivore--removal experiment--reservoir--bugach reservoir--eastern hemisphere--eurasia--krasnoyarsk [russian federation]--russian federation--world--anabaena--carassius auratus--carassius carassius--cyanobacteria--cyprinus carpio--daphnia--microcystis
Аннотация: In 2002, a "top-down" biomanipulation (reduction of biomass of planktivorous fish Carassius auratus) had been successfully carried out in a small reservoir of the river Bugach (Krasnoyarsk, Russia), after which the cyanobacterial blooming ceased. However, the reservoir ecosystem was absolutely free of Daphnia - the main link of trophic cascade. As supposed, the reduction of blooming was the result of suppression of a direct stimulation effect of planktivorous fish on cyanobacteria, revealed earlier in laboratory experiments. The question arose as to whether the effect of stimulation of cyanobacteria revealed in laboratory may lead to the changes in biomass of cyanobacteria in the reservoir, observed after the biomanipulation. To test this supposition, a mathematical model describing growth of cyanobacteria in the reservoir was developed. The modelling results and field data on biomass of cyanobacteria in summer closely coincided. Modelling calculations showed that direct influence of planktivorous fish could cause the second summer peak of water blooming by Microcystis. On the contrary, removal of crucian carp from the reservoir will not affect the level of water blooming caused by cyanobacteria Anabaena, as this species' growth is not stimulated by fish. В© 2005 Elsevier B.V. All rights reserved.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Dubovskaya O.P., Gladyshev M.I., Gubanov V.G., Makhutova O.N.
Заглавие : Study of non-consumptive mortality of Crustacean zooplankton in a Siberian reservoir using staining for live/dead sorting and sediment traps
Место публикации : Hydrobiologia. - 2003. - Vol. 504. - С. 223-227. - ISSN 00188158 (ISSN) , DOI 10.1023/B:HYDR.0000008522.88010.45
Ключевые слова (''Своб.индексиров.''): cyclops vicinus--daphnia--live/dead sorting--non-consumptive mortality--sedimentation--reservoirs (water)--sampling--sediment traps--non-consumptive mortality--population dynamics--biodiversity--mortality--population dynamics--reservoir--sediment trap--sedimentation--zooplankton--cladocera--copepoda--crustacea--cyclopia--cyclops--cyclops vicinus--daphnia
Аннотация: We studied non-consumptive (non-predatory) mortality of Daphnia and Cyclops vicinus during four sampling seasons. Mortality estimations were based on live/dead sorting using special staining and measurements of sedimentation rates for dead individuals, depended on wind speed. Original equations were used for calculations. The estimated specific non-consumptive mortality never had biologically senseless negative values, which were often obtained on the basis of the other ways of mortality estimations, and was in a good agreement with other components of population dynamics. As found, the non-consumptive mortality was the important, often the determinant component of the zooplankton population dynamics.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Zadereev Y.S., Tolomeyev A.P.
Заглавие : The vertical distribution of zooplankton in brackish meromictic lake with deep-water chlorophyll maximum
Место публикации : Hydrobiologia. - 2007. - Vol. 576, Is. 1. - С. 69-82. - ISSN 00188158 (ISSN) , DOI 10.1007/s10750-006-0294-x
Ключевые слова (''Своб.индексиров.''): anoxic hypolimnion--deep water chlorophyll maximum--meromictic lake--stratification--vertical distribution--zooplankton--algae--chlorophyll--growth kinetics--lakes--saline water--anoxic hypolimnion--deep water chlorophyll maximum--meromictic lake--stratification--vertical distribution--zooplanktons--biodiversity--biomass--brackish water--chlorophyll--green alga--meromictic lake--reproduction--stratification--vertical distribution--zooplankton--eurasia--khakassia--lake shira--russian federation--arctodiaptomus salinus--brachionus plicatilis--chlorophyta--copepoda--hexarthra oxiuris--rotifera
Аннотация: We examined the dynamics of the vertical stratification of physical, chemical and biological factors in a brackish meromictic lake with a deep-water chlorophyll maximum (Shira Lake, Russia, Khakasia) during the growing season and estimated how the vertical distribution of these factors influences the vertical distribution of the zooplankton community. The vertical distribution of zooplankton was restricted by the anoxic hypolimnion. Nauplii and younger copepodides (C1-C3) of the copepod, Arctodiaptomus salinus, and the rotifer, Brachionus plicatilis, were found in the upper warm waters. During summer stratification the maximum of A. salinus biomass, which consisted mainly of older copepodides (C4-C5) and females, was associated with the deep-water maximum of biomass of green algae, which are the preferred diet for this species. The vertical distribution of the rotifer Hexarthra oxiuris was bimodal with numerical peaks in the epi- and hypolimnion. Reproduction peaks of dominant species were separated in time. The reproduction peak of A. salinus was at the beginning of summer when A. salinus constituted up to 99% of total zooplankton biomass. The development of rotifers was detected after the reproduction peak of A. salinus when the biomass of rotifers reached 50% of total zooplankton biomass. В© 2007 Springer Science+Business Media B.V.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Gros J.B., Lasseur Ch., Tikhomirov A.A., Manukovsky N.S., Kovalev V.S., Ushakova S.A., Zolotukhin I.G., Tirranen L.S., Karnachuk R.A., Dorofeev V.Yu.
Заглавие : Testing soil-like substrate for growing plants in bioregenerative life support systems
Место публикации : Advances in Space Research. - 2005. - Vol. 36, Is. 7. - С. 1312-1318. - ISSN 02731177 (ISSN) , DOI 10.1016/j.asr.2005.05.079
Ключевые слова (''Своб.индексиров.''): life support system--matter recycling--plants--soil-like substrate--biodiversity--correlation methods--growth kinetics--hormones--plants (botany)--recycling--soils--bioregeneration--life support system--matter recycling--soil-like substrate--space research
Аннотация: We studied soil-like substrate (SLS) as a potential candidate for plant cultivation in bioregenerative life support systems (BLSS). The SLS was obtained by successive conversion of wheat straw by oyster mushrooms and worms. Mature SLS contained 9.5% humic acids and 4.9% fulvic acids. First, it was shown that wheat, bean and cucumber yields as well as radish yields when cultivated on mature SLS were comparable to yields obtained on a neutral substrate (expanded clay aggregate) under hydroponics. Second, the possibility of increasing wheat and radish yields on the SLS was assessed at three levels of light intensity: 690, 920 and 1150 ?mol m-2 s-1 of photosynthetically active radiation (PAR). The highest wheat yield was obtained at 920 ?mol m-2 s-1, while radish yield increased steadily with increasing light intensity. Third, long-term SLS fertility was tested in a BLSS model with mineral and organic matter recycling. Eight cycles of wheat and 13 cycles of radish cultivation were carried out on the SLS in the experimental system. Correlation coefficients between SLS nitrogen content and total wheat biomass and grain yield were 0.92 and 0.97, respectively, and correlation coefficients between nitrogen content and total radish biomass and edible root yield were 0.88 and 0.87, respectively. Changes in hormone content (auxins, gibberellins, cytokinins and abscisic acid) in the SLS during matter recycling did not reduce plant productivity. Quantitative and species compositions of the SLS and irrigation water microflora were also investigated. Microbial community analysis of the SLS showed bacteria from Bacillus, Pseudomonas, Proteus, Nocardia, Mycobacterium, Arthrobacter and Enterobacter genera, and fungi from Trichoderma, Penicillium, Fusarium, Aspergillus, Mucor, Botrytis, and Cladosporium genera. В© 2005 COSPAR. Published by Elsevier Ltd. All rights reserved.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Pisman T.I., Pechurkin N.S., Somova L.A.
Заглавие : Competition between links in "producers-consumer" trophic chains in an aquatic closed system with spatially separated components
Место публикации : Advances in Space Research. - 2001. - Vol. 27, Is. 9. - С. 1599-1603. - ISSN 02731177 (ISSN) , DOI 10.1016/S0273-1177(01)00255-1
Ключевые слова (''Своб.индексиров.''): algae--aquifers--biodiversity--metabolism--nitrogen--protozoa--aquatic closed systems--spatially separated components--space research--aquatic ecosystem--competition--grazing--primary production--fresh water--nitrogen--animal--article--chlorella--food chain--green alga--metabolism--microclimate--paramecium--rotifera--algae, green--animals--chlorella--ecological systems, closed--food chain--fresh water--nitrogen--paramecium--rotifera
Аннотация: The work analyzes functioning of a "producer-consumer" closed aquatic system with spatially separated links, where each component consisted of two species. Producers in the system were the microalgae of Chlorella vulgaris and Scenedesmus sp., consumers - Paramecium caudatum infusoria and Brachionus sp. rotifers. In the experiment the competing predators were consuming on a mixed culture of algae, and the competition of algae was studied under nitrogen limitation. Under these conditions competitiveness of Scenedemus was higher than that of Chlorella vulgaris. Metabolism products of Scenedesmus algae have been found to have negative effect on reproduction of Paramecium caudatum protozoa. Predator population dynamics in the "consumer" link demonstrated that the rotifers that consume two algal species are more competitive compared to protozoa feeding on chlorella only. В© 2001 COSPAR. Published by Elsevier Science Ltd. All rights reserved.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Rogozin D.Y., Degermendzhy A.G.
Заглавие : Theory of the search density-dependent biochemical factors maintaining biodiversity in microbial communities
Место публикации : Dokl. Akad. Nauk: MEZHDUNARODNAYA KNIGA, 1995. - Vol. 345, Is. 1. - С. 127-129. - 3. - ISSN 0869-5652
Примечания : Cited References: 4
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Вид документа : Статья из сборника (однотомник)
Шифр издания :
Автор(ы) : Zadereev Y.S., Gubanov V.G.
Заглавие : Density dependent regulation of the reproduction cycle of Moina macrocopa (Cladocera)
Колич.характеристики :7 с
Место публикации : BIODIVERSITY CRISIS AND CRUSTACEA. Ser. CRUSTACEAN ISSUES: A A BALKEMA PUBLISHERS, 2000. - Vol. 12: 4th International Crustacean Congress (JUL 20-24, 1998, AMSTERDAM, NETHERLANDS). - С. 535-541. - ISBN 0168-6356. - ISBN 90-5410-478-3
Примечания : Cited References: 19
Предметные рубрики: DAPHNIA-PULEX
ZOOPLANKTON
MAGNA
Аннотация: The allelopathic effect of population density on gametogenesis induction of Moina macrocopa (Crustacea: Cladocera) was investigated at varying food concentration, photoperiod, and temperature. The presence of the non-trophic effect of population density on gametogenesis induction was demonstrated. The experiments with single females have shown that if the photoperiod, temperature, and food concentration are favorable for parthenogenesis, the crowding water has the effect of stimulating females into changing the reproduction mode. This effect was enhanced by using a higher density of the population to achieve crowding. The change of reproduction mode occurs in the experiments with populations of M. macrocopa with the achievement of food availability favorable for the parthenogenesis of single females. Chemical interactions between animals are the most obvious explanation for the obtained results.
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10.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Kolmakova O.V., Gladyshev M.I., Rozanov A.S., Peltek S.E., Trusova M.Y.
Заглавие : Spatial biodiversity of bacteria along the largest Arctic river determined by next-generation sequencing
Место публикации : FEMS Microbiol. Ecol. - 2014. - Vol. 89, Is. 2. - С. 442-450. - ISSN 15746941 (ISSN) , DOI 10.1111/1574-6941.12355
Ключевые слова (''Своб.индексиров.''): 16s rrna gene--bacterial community--diversity--yenisei river--actinobacteria--bacteria (microorganisms)--cyanobacteria--proteobacteria
Аннотация: The biodiversity of bacterial communities along the Yenisei River at section c. 1800 km was studied using next-generation sequencing of 16S rRNA genes and common biodiversity indices. Overall, 3022 unique operational taxonomic units were identified. Actinobacteria and Proteobacteria were the dominant phyla at all sampling sites. The highest alpha-diversity values were found in the middle section of the studied river. The beta-diversity of bacterial assemblages in the river was related to the surrounding landscape (biome): three distinctly different bacterial assemblages occurred in sections of the river, situated in mountain taiga, plain taiga and in a region of permafrost, covered by forest-tundra and tundra. Tributaries arising from these different landscapes likely contributed substantially to the variations of Yenisei bacterial communities. In contrast to a prediction of the river continuum concept, the proportion of photoautotrophic Cyanobacteria in bacterial assemblages did not increase downstream, but peaked at the middle section. © 2014 Federation of European Microbiological Societies.
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11.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Kolmakova O.V., Gladyshev M.I., Rozanov A.S., Peltek S.E., Trusova M.Y.
Заглавие : Spatial biodiversity of bacteria along the largest Arctic river determined by next-generation sequencing
Колич.характеристики :9 с
Коллективы : Attracting Leading Scientists to Russian Educational Institutions Program of the Russian Federation [11.G34.31.0014]; Siberian Federal University
Место публикации : FEMS Microbiol. Ecol.: WILEY-BLACKWELL, 2014. - Vol. 89, Is. 2. - С. 442-450. - ISSN 0168-6496, DOI 10.1111/1574-6941.12355. - ISSN 1574-6941
Примечания : Cited References: 36. - This work was supported by the Attracting Leading Scientists to Russian Educational Institutions Program of the Russian Federation, agreement 11.G34.31.0014, and by the project G-1 of Siberian Federal University, carried out according to Federal tasks of the Ministry of Education and Science of Russian Federation.
Предметные рубрики: DISSOLVED ORGANIC-MATTER
INLAND WATERS
CARBON
BACTERIOPLANKTON
COMMUNITY
GREENGENES
ECOSYSTEM
RESERVOIR
PATTERNS
PRIMERS
Ключевые слова (''Своб.индексиров.''): bacterial community--diversity--16s rrna gene--yenisei river
Аннотация: The biodiversity of bacterial communities along the Yenisei River at section c. 1800 km was studied using next-generation sequencing of 16S rRNA genes and common biodiversity indices. Overall, 3022 unique operational taxonomic units were identified. Actinobacteria and Proteobacteria were the dominant phyla at all sampling sites. The highest alpha-diversity values were found in the middle section of the studied river. The beta-diversity of bacterial assemblages in the river was related to the surrounding landscape (biome): three distinctly different bacterial assemblages occurred in sections of the river, situated in mountain taiga, plain taiga and in a region of permafrost, covered by forest-tundra and tundra. Tributaries arising from these different landscapes likely contributed substantially to the variations of Yenisei bacterial communities. In contrast to a prediction of the river continuum concept, the proportion of photoautotrophic Cyanobacteria in bacterial assemblages did not increase downstream, but peaked at the middle section.
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12.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Trusova M.Y., Gladyshev M.I.
Заглавие : Phylogenetic diversity of winter bacterioplankton of eutrophic Siberian reservoirs as revealed by 16S rRNA gene sequences
Колич.характеристики :8 с
Место публикации : Microb. Ecol.: SPRINGER-VERLAG, 2002. - Vol. 44, Is. 3. - P252-259. - ISSN 0095-3628, DOI 10.1007/s00248-002-2020-1
Примечания : Cited References: 34
Предметные рубрики: RIBOSOMAL-RNA ANALYSIS
COMMUNITY COMPOSITION
BACTERIAL DIVERSITY
LAKE
IDENTIFICATION
BIODIVERSITY
CULTIVATION
TAXONOMY
DYNAMICS
RIVER
Аннотация: Using 16S rRNA gene sequence analyses we investigated the bacterial diversity of winter bacterioplankton of two eutrophic Siberian reservoirs. These reservoirs show similarity in phytoplankton community composition in spring and autumn but tend to differ in summer in exhibiting cyanobacterial bloom. Forty-eight unique partial 16S RNA gene sequences retrieved from two libraries were mostly affiliated with the class Actinobacteria, beta subdivision of the class Proteobacteria, and the phylum Cytophaga-Flavobacterium-Bacteroides The clone library of the pond exhibiting summer cyanobacterial bloom showed more diversity in sequence composition. A significant number of bacterial 16S rRNA gene clones were closely related to freshwater bacteria previously found in different aquatic ecosystems. This finding confirms the assumption that some bacterial clades are globally distributed.
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13.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Bolobanschikova, G. N., Rogozin, D. Yu., Firsova, A. D., Rodionova, E. V., Degermendzhy, N. N., Shabanov, A. V.
Заглавие : Analysis of diatom algae from the water column and bottom sediments of Shira Lake (Khakassia, Russia)
Колич.характеристики :13 с
Коллективы : Russian Foundation for Basic Research [13-05-00429-a], Biodiversity Program for Basic Research, Russian Academy of Sciences [30.8]
Место публикации : Contemp. Probl. Ecol.: MAIK NAUKA/INTERPERIODICA/SPRINGER, 2015. - Vol. 8, Is. 2. - С. 173-185. - ISSN 1995-4255, DOI 10.1134/S1995425515020031. - ISSN 1995-4263(eISSN)
Примечания : Cited References:21. - This work was supported by Russian Foundation for Basic Research, project no. 13-05-00429-a and the Biodiversity Program for Basic Research, Russian Academy of Sciences, project no. 30.8.
Ключевые слова (''Своб.индексиров.''): paleolimnology--diatom algae--meromictic lake--sedimentation--cyclotella--choctawhatcheeana--aulacoseira valida--aulacoseira ambigua
Аннотация: Lake Shira as a meromictic lake is object of interest for paleolimnological studies. In May 2011 core samples were collected from the bottom of Lake Shira and the species composition of diatom algae, which serve as bioindicators of the state of the lake, were studied. In addition, in 2012, seasonal water samples and material from sediment traps were collected and the species composition of diatoms in them was analyzed. The results of the analysis showed that the lake, like in previous years of research, was dominated by Cyclotella choctawhatcheeana Prasad. Diatoms were found twice in the studied core above the white carbonate layers and were absent in other layers. The species living in the lake at present were observed down to the first white carbonate layer, including the predominant Cyclotella choctawhatcheeana. This fact presumably proves the consistency of the species composition of diatoms and the overall stable condition of the lake since 1946 (Rogozin et al., 2005). Down to the second white carbonate layer, the dominant species were Aulcosira valida (Grunow) Krammer and Aulcosira italica (Grunow) Simonsen. Nitzchia sigmodea (Nitzsch) W. Smith and Fragilaria construens var. venter (Ehrenberg) Grunow were also observed at these depths, dating approximately to 1655-1690. These are freshwater species that belong to the diatoms of arctic, alpine, and temperate latitudes, which develop in shallow waters under moderate temperature conditions. This fact suggests that Lake Shira was less salty in the middle and end of the 17th century than today.
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14.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Baatar, Bayanmunkh, Chiang, Pei-Wen, Rogozin, Denis Yu, Wu, Yu-Ting, Tseng, Ching-Hung, Yang, Cheng-Yu, Chiu, Hsiu-Hui, Oyuntsetseg, Bolormaa, Degermendzhy, Andrey G., Tang, Sen-Lin
Заглавие : Bacterial Communities of Three Saline Meromictic Lakes in Central Asia
Колич.характеристики :22 с
Коллективы : National Sciences Council of Taiwan [NSC99- 2923-B-001-001-MY3, NSC 102-2923-B-001-004, NSC101-2923-B-001-003-MY3, NSC99-2923-B-001-001-MY3]; Biodiversity Research Center, Academia Sinica, Taiwan; Russian Foundation for Basic Research [14-04-01060-a]
Место публикации : PLoS One: PUBLIC LIBRARY SCIENCE, 2016. - Vol. 11, Is. 3. - Ст.e0150847. - ISSN 1932-6203, DOI 10.1371/journal.pone.0150847
Примечания : Cited References:65. - This study was supported by the thematic project funding of Taiwan-Russian Joint Project (NSC99- 2923-B-001-001-MY3 and NSC 102-2923-B-001-004) and Taiwan-Mongolian Joint Project (NSC101-2923-B-001-003-MY3) from the National Sciences Council of Taiwan and Biodiversity Research Center, Academia Sinica, Taiwan and the Russian Foundation for Basic Research, Grant No. 14-04-01060-a.; We thank our Russian and Mongolian colleagues in the Institute of Biophysics SB RAS and National University of Mongolia for assistance with providing samples and hydro-parameter data. This study was supported by the thematic project funding of Taiwan-Russian Joint Project (NSC99-2923-B-001-001-MY3 and NSC 102-2923-B-001-004) and Taiwan-Mongolian Joint Project (NSC101-2923-B-001-003-MY3) from the National Sciences Council of Taiwan and Biodiversity Research Center, Academia Sinica, Taiwan and the Russian Foundation for Basic Research, Grant No. 14-04-01060-a.
Предметные рубрики: PURPLE SULFUR BACTERIA
REAL-TIME PCR
MICROBIAL COMMUNITIES
Аннотация: Meromictic lakes located in landlocked steppes of central Asia (similar to 2500 km inland) have unique geophysiochemical characteristics compared to other meromictic lakes. To characterize their bacteria and elucidate relationships between those bacteria and surrounding environments, water samples were collected from three saline meromictic lakes (Lakes Shira, Shunet and Oigon) in the border between Siberia and the West Mongolia, near the center of Asia. Based on in-depth tag pyrosequencing, bacterial communities were highly variable and dissimilar among lakes and between oxic and anoxic layers within individual lakes. Proteobacteria, Bacteroidetes, Cyanobacteria, Actinobacteria and Firmicutes were the most abundant phyla, whereas three genera of purple sulfur bacteria (a novel genus, Thiocapsa and Halochromatium) were predominant bacterial components in the anoxic layer of Lake Shira (similar to 20.6% of relative abundance), Lake Shunet (similar to 27.1%) and Lake Oigon (similar to 9.25%), respectively. However, few known green sulfur bacteria were detected. Notably, 3.94% of all sequencing reads were classified into 19 candidate divisions, which was especially high (23.12%) in the anoxic layer of Lake Shunet. Furthermore, several hydro-parameters (temperature, pH, dissolved oxygen, H2S and salinity) were associated (P0.05) with variations in dominant bacterial groups. In conclusion, based on highly variable bacterial composition in water layers or lakes, we inferred that the meromictic ecosystem was characterized by high diversity and heterogenous niches.
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15.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Gladyshev M. I., Sushchik N. N., Shulepina S. P., Ageev A. V., Dubovskaya O. P., Kolmakova A. A., Kalachova G. S.
Заглавие : Secondary Production of Highly Unsaturated Fatty Acids by Zoobenthos Across Rivers Contrasting in Temperature
Колич.характеристики :12 с
Коллективы : Siberian Federal University [6.1089.214/K]; Russian Federal Tasks of Fundamental Research [51.1.1]
Место публикации : River Res. Appl.: WILEY-BLACKWELL, 2016. - Vol. 32, Is. 6. - С. 1252-1263. - ISSN 1535-1459, DOI 10.1002/rra.2945. - ISSN 1535-1467(eISSN)
Примечания : Cited References:55. - The work was supported by the project no. 6.1089.214/K of Siberian Federal University carried out according to Federal Tasks of Ministry of Education and Science of Russian Federation and by Russian Federal Tasks of Fundamental Research (project no. 51.1.1).
Предметные рубрики: AQUATIC ECOSYSTEMS
CLIMATE-CHANGE
YENISEI RIVER
ALPINE PONDS
LAKE
Ключевые слова (''Своб.индексиров.''): essential polyunsaturated fatty acids--river zoobenthos--secondary--production--biodiversity--water temperature--climate warming
Аннотация: Highly unsaturated fatty acids (HUFA), namely eicosapentaenoic acid (20:5n-3, EPA) and docosahexaenoic acid (22:6n-3, DHA), which are essential for many animals, including humans, are mainly produced in aquatic trophic webs. In fast-flowing rivers, macrozoobenthos is the main source of HUFA for fish and may be particularly vulnerable to thermal alterations associated with climate change. We studied benthic communities in a unique natural ecosystem: the Yenisei River downstream of the dam of Krasnoyarsk Hydroelectric Power Station with very low temperature in summer because of discharge of cold water from deep in the reservoir and its tributaries with high summer temperature. This natural experiment' allowed to get rid of confounding factors, such as differences in light, seasonality, geology (biogeochemistry) and biogeography (regional species pools). As found, in spite of an increase of biodiversity and rates of daily production in warm rivers compared with cold sites, DHA and partly EPA production of zoobenthos decreased with the increase of temperature because of changes in species composition. Thus, in a climate warming context, we can predict a decrease of production of these HUFA by river zoobenthos and thereby a diminishing of their supply for fish and next to humans. Copyright (c) 2015 John Wiley & Sons, Ltd.
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16.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Dgebuadze Y. Y., Gladyshev M. I.
Заглавие : Biotic fluxes of matter and energy between aquatic and terrestrial ecosystems
Место публикации : Contemp. Probl. Ecol. - 2016. - Vol. 9, Is. 4. - С. 391-395. - ISSN 19954255 (ISSN) , DOI 10.1134/S1995425516040041
Ключевые слова (''Своб.индексиров.''): amphibionts--biodiversity--biological invasions--ecotone--fluxes of matter and energy--water–land interface--animalia
Аннотация: This paper is an introduction to a special issue of the journal. A brief historical delineation of the question of studying interfaces between adjacent ecosystems (ecotones) is presented. High biodiversity of ecotones and their vulnerability to natural and anthropogenic impacts, including invasions of alien species, are noted. It is supposed that there is no contradiction between the ecotone and river continuum concepts. The important ecological role of amphibiotic animals and plants in interactions and functioning of the adjacent ecosystems is emphasized. The issue of studying the quantitative parameters of fluxes of matter and energy between ecosystems in conjunction with their qualitative parameters (chemical elemental and biochemical compositions) is considered in the present paper. © 2016, Pleiades Publishing, Ltd.
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17.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Ivanova Y., Soukhovolsky V.
Заглавие : Modeling the boundaries of plant ecotones of mountain ecosystems
Место публикации : Forests: MDPI AG, 2016. - Vol. 7, Is. 11. - ISSN 19994907 (ISSN) , DOI 10.3390/f7110271
Ключевые слова (''Своб.индексиров.''): biodiversity--boundaries of ecotones--ecotone--mountain forest ecosystems--biodiversity--climate change--climate models--ecology--forestry--landforms--vegetation--boundary shifts--ecotone--forest inventory data--mountain ecosystems--mountain forests--second-order phase transition--species composition--vegetation belt--ecosystems
Аннотация: The ecological second-order phase transition model has been used to describe height-dependent changes in the species composition of mountain forest ecosystems. Forest inventory data on the distribution of various tree species in the Sayan Mountains (south Middle Siberia) are in good agreement with the model proposed in this study. The model was used to estimate critical heights for different altitudinal belts of vegetation, determine the boundaries and extents of ecotones between different vegetation belts, and reveal differences in the ecotone boundaries between the north- and south-facing transects. An additional model is proposed to describe ecotone boundary shifts caused by climate change. © 2016 by the authors.
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18.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Chen S. -C., Huang H. -H., Lai M. -C., Weng C. -Y., Chiu H. -H., Tang S. -L., Rogozin D. Y., Degermendzhy A. G.
Заглавие : Methanolobus psychrotolerans sp. nov., a psychrotolerant methanoarchaeon isolated from a saline meromictic lake in siberia
Место публикации : Int. J. Syst. Evol. Microbiol.: Microbiology Society, 2018. - Vol. 68, Is. 4. - С. 1378-1383. - ISSN 14665026 (ISSN) , DOI 10.1099/ijsem.0.002685
Ключевые слова (''Своб.индексиров.''): archaea--lake shira--methanogen--methanolobus--psychrotolerant--saline meromictic lake
Аннотация: A psychrotolerant, methylotrophic methanogen, strain YSF-03T, was isolated from the saline meromictic Lake Shira in Siberia. Cells of strain YSF-03T were non-motile, irregular cocci and 0.8–1.2?m in diameter. The methanogenic substrates utilized by strain YSF-03T were methanol and trimethylamine. The temperature range of growth for strain YSF-03T was from 0 to 37 °C. The optimum growth conditions were 30–37 °C, pH 7.0–7.4 and 0.17M NaCl. The G+C content of the genome of strain YSF-03T was 41.3 mol%. Phylogenetic analysis revealed that strain YSF-03T was most closely related to Methanolobus profundi MobMT (98.15% similarity in 16S rRNA gene sequence). Genome relatedness between strain YSF-03T and MobMT was computed using the Genome-to-Genome Distance Calculator and average nucleotide identity, which gave values of 23.5 and 79.3 %, respectively. Based on the morphological, phenotypic, phylogenetic and genomic relatedness data presented here, it is evident that strain YSF-03T represents a novel species of the genus Methanolobus, for which the name Methanolobus psychrotolerans sp. nov. is proposed. The type strain is YSF-03T (=BCRC AR10049T=DSM 104044T=NBRC 112514T). © 2018 IUMS.
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19.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Borovikova, Elena A., Artamonova, Valentina S.
Заглавие : Morphological specificities of vendace (Salmoniformes: Salmonidae: Coregoninae: Coregonus albula) population in Lake Pleshcheyevo (the Volga River basin): relationships of two phylogenetic lineages in a new zone of secondary contact
Колич.характеристики :12 с
Коллективы : Russian Science Foundation [16-14-10001]
Место публикации : Org. Divers. Evol.: SPRINGER HEIDELBERG, 2018. - Vol. 18, Is. 3. - С. 355-366. - ISSN 1439-6092, DOI 10.1007/s13127-018-0375-5. - ISSN 1618-1077(eISSN)
Примечания : Cited References:46. - The preparation of this manuscript was supported by the Russian Science Foundation, grant no. 16-14-10001.
Предметные рубрики: ECOLOGICAL DIVERGENCE
SPECIES PAIR
ORIGIN
EVOLUTIONARY
WHITEFISH
Ключевые слова (''Своб.индексиров.''): vendace--morphological characters--allopatric origin--phylogenetic--lineages--lake pleshcheyevo
Аннотация: This is the report about the secondary contact zone of coregonids in the Upper Volga basin. Two mitochondrial DNA (mtDNA) phylogenetic lineages of vendace Coregonus albula (Linnaeus, 1758) living in Lake Pleshcheyevo have been analyzed and compared in terms of morphological characters. These lineages have developed under the conditions of allopatry and are characterized by strong differences of the mitochondrial DNA sequences. The lineages have coexisted in the same lake since the last glaciation maximum (about 10,000years ago). The morphological analysis has shown that representatives of both lineages correspond to C. albula, while slight, morphological variations between lineages indicate different food preferences and locomotor abilities. Scenarios where multiple distinct coexisting phylogenetic lineages are characterized by low levels of morpho-ecological divergence are uncommon. These situations are important for understanding biodiversity dynamics and the mechanisms that drive coexistence, adaptive divergence, hybridization, and extinction when genetically divergent lineages meet in secondary contact.
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20.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Gozlan R. E., Karimov B. K., Zadereev E., Kuznetsova D., Sandra Brucet S S.
Заглавие : Status, trends, and future dynamics of freshwater ecosystems in Europe and Central Asia
Место публикации : Inland Waters: Taylor and Francis Ltd., 2019. - Article in press. - ISSN 20442041 (ISSN) , DOI 10.1080/20442041.2018.1510271
Ключевые слова (''Своб.индексиров.''): aquatic--biodiversity--conservation--habitat
Аннотация: This review is part of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) report on Europe and Central Asia (ECA) and provides a critical assessment of issues facing decision-makers, including freshwater biodiversity and ecosystem trends as well as drivers of change. Freshwater systems are well established as the most threatened ecosystem type in the ECA region, with the quantity and quality of habitats and abundance of many species rapidly declining. Only about half (53%) of the EU's rivers and lakes achieved good ecological status in 2015 (as defined by the Water Framework Directive in terms of the quality of the biological community), and many lakes, ponds, and streams are disappearing as a consequence of agricultural intensification and inefficient irrigation and urbanisation, combined with climate change. The situation regarding freshwater biodiversity remains highly critical in ECA as many species remain threatened with extinction, including 50% of known species for some groups (e.g., molluscs, amphibians). Drivers of ECA freshwater taxa include the destruction or modification of their habitat, including water abstraction, which affects ?89% of all amphibian threatened species and ?26% of threatened freshwater invertebrate species. Of particular concern is the lack of data for freshwater invertebrates. Current status is available for only a minority of species, and the impact of alien invasive species is often unknown, especially in Central Asia. Based on current freshwater biodiversity trends, it is highly unlikely that ECA will achieve either the respective Aichi biodiversity targets by 2020 (i.e., targets 2 to 4, 6 to 12, and 14) or Target 1 of the Biodiversity Strategy. © 2019, © 2019 International Society of Limnology (SIL).
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