Библиотека института биофизики СО РАН

Главная

Базы данных

Труды сотрудников ИБФ СО РАН - результаты поиска

Вид поиска

Каталог книг и продолжающихся изданий библиотеки Института биофизики СО РАН

Иностранные журналы библиотеки Института биофизики СО РАН

Отечественные журналы библиотеки Института биофизики СО РАН

Каталог диссертаций ИБФ СО РАН

Труды сотрудников ИБФ СО РАН

Область поиска

в найденном

Найдено в других БД:

Каталог книг и продолжающихся изданий библиотеки Института биофизики СО РАН (24)

Иностранные журналы библиотеки Института биофизики СО РАН (3)

Формат представления найденных документов:
полный	информационный	краткий

Отсортировать найденные документы по:
автору	заглавию	году издания	типу документа

Поисковый запрос: (<.>K=Biotechnology<.>)

Общее количество найденных документов : 87
Показаны документы с 1 по 20

1-20 21-40 41-60 61-80 81-87

Recombinant Ca2+-regulated photoproteins of ctenophores: current knowledge and application prospects / L. P. Burakova, E. S. Vysotski // Appl. Microbiol. Biotechnol. - 2019. - Vol. 103, Is. 15. - P5929-5946, DOI 10.1007/s00253-019-09939-0 . - ISSN 0175-7598
Кл.слова (ненормированные):
Bioluminescence -- Coelenterazine -- Intracellular calcium -- Photoinactivation -- Absorption spectroscopy -- Alkalinity -- Animals -- Binding sites -- Cloning -- Encoding (symbols) -- Phosphorescence -- Physicochemical properties -- Signal encoding -- Amino acid sequence -- Application prospect -- Biotechnology applications -- Coelenterazine -- Intracellular calcium -- Marine animals -- Photoinactivation -- Structural feature -- Bioluminescence -- Animalia -- Cnidaria -- Ctenophora (coelenterates)
Аннотация: Bright bioluminescence of ctenophores is conditioned by Ca2+-regulated photoproteins. Although they share many properties characteristic of hydromedusan Ca2+-regulated photoproteins responsible for light emission of marine animals belonging to phylum Cnidaria, a substantial distinction still exists. The ctenophore photoproteins appeared to be extremely sensitive to light—they lose the ability for bioluminescence on exposure to light over the entire absorption spectrum. Inactivation is irreversible because keeping the inactivated photoprotein in the dark does not recover its activity. The capability to emit light can be restored only by incubation of inactivated photoprotein with coelenterazine in the dark at alkaline pH in the presence of oxygen. Although these photoproteins were discovered many years ago, only the cloning of cDNAs encoding these unique bioluminescent proteins in the early 2000s has provided a new impetus for their studies. To date, cDNAs encoding Ca2+-regulated photoproteins from four different species of luminous ctenophores have been cloned. The amino acid sequences of ctenophore photoproteins turned out to completely differ from those of hydromedusan photoproteins (identity less than 29%) though also similar to them having three EF-hand Ca2+-binding sites. At the same time, these photoproteins reveal the same two-domain scaffold characteristic of hydromedusan photoproteins. This review is an attempt to systemize and critically evaluate the data scattered through various articles regarding the structural features of recombinant light-sensitive Ca2+-regulated photoproteins of ctenophores and their bioluminescent and physicochemical properties as well as to compare them with those of hydromedusan photoproteins. In addition, we also discuss the prospects of their biotechnology applications. © 2019, Springer-Verlag GmbH Germany, part of Springer Nature.

Scopus,
Смотреть статью,
WOS
Держатели документа:
Photobiology Laboratory, Institute of Biophysics, Russian Academy of Sciences, Siberian Branch, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Krasnoyarsk, 660036, Russian Federation

Доп.точки доступа:
Burakova, L. P.; Vysotski, E. S.

Найти похожие

Time-dependent trends of artificial radionuclides in biota of the Yenisei River (Siberia, Russia) / T. A. Zotina, E. A. Trofimova, D. V. Dementyev // J. Environ. Radioact. - 2019. - Vol. 208-209. - Ст. 106028, DOI 10.1016/j.jenvrad.2019.106028 . - ISSN 0265-931X
Кл.слова (ненормированные):
Apatania crymophila -- Esox lucius -- Eulimnogammarus viridis -- Fontinalis antipyretica -- Leuciscus baicalensis -- Thymallus arcticus -- Fish -- Muscle -- Nuclear reactors -- Plant shutdowns -- Apatania crymophila -- Esox lucius -- Eulimnogammarus viridis -- Fontinalis antipyretica -- Leuciscus baicalensis -- Thymallus arcticus -- Radioisotopes -- Amphipoda -- Apatania crymophila -- Bryophyta -- Esox lucius -- Eulimnogammarus viridis -- Fontinalis antipyretica -- Leuciscus -- Thymallus arcticus -- Trichoptera
Аннотация: We investigated time-dependent trends of artificial radionuclides in aquatic moss, zoobenthos (amphipods and caddisfly larvae), and three abundant wild fish species (Northern pike, Arctic grayling, and Siberian dace) inhabiting the Yenisei River in the vicinity of the radioactive discharge site in 2007–2015, in a period before and after the shutdown of the last nuclear reactor plant at the Mining-and-Chemical Combine (MCC), which occurred in 2010. From our research, we learned that concentrations of short-lived radionuclides, whose discharges to the Yenisei either stopped or declined after the shutdown of the reactor plant at the MCC (24Na, 46Sc,51Cr, 54Mn, 58Co, 59Fe, 60Co, 65Zn, 103Ru, 141,144Ce, 152,154Eu, 239Np), decreased in biota samples as well. The ecological half-life (EHL) of 65Zn (0.4–0.7 y) was similar to the physical half-life of this isotope, the EHLs of 60Co (1.2–2.1 y) and 152Eu (1.8 y) were shorter than the physical half-lives of these isotopes. Concentration of 137Cs did not decrease significantly in biota of the Yenisei after the shutdown of the last reactor plant because the discharges of this radionuclide to the Yenisei continued at the same level. On a longer-term scale (since 1973 and since 1991), concentration of 137Cs in fish muscle had significantly decreased, following the decrease in annual discharges of this radionuclide to the Yenisei, and the EHL of 137Cs was estimated as 6.5–12.8 y. Statistically significant correlation with annual discharges of 137Cs was revealed for the concentration of this radionuclide in grayling (whole bodies and muscle); dace (muscle), and amphipods. Despite their ability to accumulate high concentrations of 137Cs, aquatic moss and caddisfly larvae (analyzed together with their stony casings) were not sensitive to interannual fluctuations in the releases of this radionuclide to the Yenisei. Among the analyzed fish species of the Yenisei, the highest activity concentration of 137Cs was revealed in pike (body and muscle), indicating biomagnification of this radionuclide in the top level of the trophic chain. © 2019 Elsevier Ltd

Scopus,
Смотреть статью,
WOS
Держатели документа:
Institute of Biophysics, Federal Research Center “Krasnoyarsk Science Center” of the Siberian Branch of the Russian Academy of Sciences, 50/50 Akademgorodok, Krasnoyarsk, 660036, Russian Federation
Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodny av., Krasnoyarsk, 660041, Russian Federation

Доп.точки доступа:
Zotina, T. A.; Trofimova, E. A.; Dementyev, D. V.

Найти похожие

Role of Hsp90 and ATP in modulating apyrase activity and firefly luciferase kinetics / M. A. Kirillova [et al.] // Int. J. Biol. Macromol. - 2019. - Vol. 131. - P691-696, DOI 10.1016/j.ijbiomac.2019.03.110 . - ISSN 0141-8130
Кл.слова (ненормированные):
Bioluminescence -- Heat shock protein 90 -- High-throughput screening -- adenosine triphosphate -- apyrase -- bovine serum albumin -- firefly luciferase -- heat shock protein 90 -- stabilizing agent -- Article -- bioluminescence -- clinical study -- conformation -- controlled study -- denaturation -- enzyme activity -- enzyme kinetics -- high throughput screening -- incubation time -- nonhuman -- protein protein interaction -- protein refolding -- temperature -- thermal denaturation -- time
Аннотация: The present manuscript describes a novel bioassay consisting of apyrase and heat shock protein 90 (Hsp90) without additional co-chaperone supplementation; intended for high-throughput screening of anti-cancer drugs and prognosis of stress. In this regard, Hsp90 and adenosine 5?-triphosphate (ATP) mediated firefly luciferase (FLuc) kinetics was investigated using apyrase and FLuc as client proteins. Bioluminescent assay containing Hsp90, ATP, and apyrase led to complete loss of luminescence at 50 °C which indicates the protective role of Hsp90 against thermal denaturation. Similarly, the assay sample comprising Hsp90, ATP, and FLuc showed 2 fold increments in luminescence than their counterparts. Introduction of bovine serum albumin (BSA) to the pre-incubated assay mixture led to an initial rise in the luminescence (28%) in comparison to the sample containing Hsp90, ATP and FLuc. Therefore, FLuc based HTS assays are not suitable for clinical samples which may contain stabilizing agents. However, thermally denatured FLuc and apyrase could not regain their active conformation even when Hsp90 and ATP were introduced in the assay system. This observation justifies the role of Hsp90 to be protective rather than a reparation agent when acts without co-chaperones. © 2019

Scopus,
Смотреть статью,
WOS
Держатели документа:
Laboratory of Bioluminescent Biotechnologies, Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodny Prospect, Krasnoyarsk, 660041, Russian Federation
Institute of Biophysics SB RAS, Federal Research Center ‘Krasnoyarsk Science Center SB RAS’, Akademgorodok 50/50, Krasnoyarsk, 660036, Russian Federation

Доп.точки доступа:
Kirillova, M. A.; Ranjan, R.; Esimbekova, E. N.; Kratasyuk, V. A.

Найти похожие

Low-temperature argon and ammonia plasma treatment of poly-3-hydroxybutyrate films: Surface topography and chemistry changes affect fibroblast cells in vitro / R. A. Surmenev [et al.] // Eur Polym J. - 2019. - Vol. 112. - P137-145, DOI 10.1016/j.eurpolymj.2018.12.040 . - ISSN 0014-3057
Кл.слова (ненормированные):
Cell adhesion -- Dielectric barrier discharge -- Plasma treatment -- Surface etching -- Wetting behaviour -- Ammonia -- Argon -- Cell adhesion -- Cell culture -- Chemical modification -- Contact angle -- Dielectric materials -- Electric discharges -- Fibroblasts -- Mammals -- Nitrogen plasma -- Plasma applications -- Surface roughness -- Surface treatment -- Temperature -- Topography -- Ammonia plasma treatment -- Dielectric barrier discharges -- Different proportions -- Plasma treatment -- Poly-3-hydroxybutyrate -- Poly3-hydroxybutyrate (PHB) -- Surface etching -- Wetting behaviour -- Wetting
Аннотация: Poly-3-hydroxybutyrate (PHB) films were plasma-treated using pure NH3, pure Ar or mixtures of the two different proportions (20%, 30%, 40%, 50%, 70% NH3 in Ar). Surface chemistry and surface topography changes of PHB films were observed after plasma processing in all plasma regimes. The XPS results confirmed the absence of chemical modification in the case of pure Ar plasma treatment. Nitrogen-containing groups (e.g., N–C[dbnd]O) were detected on the surfaces of P3HB films treated with NH3-containing plasma. The surfaces of the untreated P3HB films were hydrophobic, and plasma treatment turned the surfaces hydrophilic, irrespective of the treatment. A significant decrease in the contact angle and an increase in the free surface energy were observed. An insignificant surface ageing effect was observed when P3HB samples were exposed to air for 10 days. In NIH 3T3 mice fibroblast cells, cell adhesion was significantly improved after plasma treatment in an Ar atmosphere, which is likely related to the fact that there was a surface ? potential of 88.6 mV at neutral pH, causing a cleavage of the polymer chains and an increase in surface roughness. © 2018 Elsevier Ltd

Scopus,
Смотреть статью,
WOS
Держатели документа:
Physical Materials Science and Composite Materials Centre, National Research Tomsk Polytechnic University, Tomsk, 634050, Russian Federation
Fraunhofer Institute for Interfacial Engineering and Biotechnology IGB, Stuttgart, 70569, Germany
Synchrotron Radiation Facility ANKA, Karlsruhe Institute of Technology, 76344 Eggenstein-Leopoldshafen, Germany
Institute of Biophysics of Siberian Branch of Russian Academy of Sciences, Federal Research Center “Krasnoyarsk Science Center SB RAS”, 50/50 Akademgorodok, Krasnoyarsk, 660036, Russian Federation
School of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodny pr., Krasnoyarsk, 660041, Russian Federation

Доп.точки доступа:
Surmenev, R. A.; Chernozem, R. V.; Syromotina, D. S.; Oehr, C.; Baumbach, T.; Krause, B.; Boyandin, A. N.; Dvoinina, L. M.; Volova, T. G.; Surmeneva, M. A.

Найти похожие

Antifungal activity of P3HB microparticles containing tebuconazole / A. M. Shershneva [et al.] // J. Environ. Sci. Health Part B Pestic. Food Contamin. Agric. Wastes. - 2019, DOI 10.1080/03601234.2018.1550299 . - Article in press. - ISSN 0360-1234
Кл.слова (ненормированные):
Antifungal activity -- encapsulation -- microparticles -- poly-3-hydroxybutyrate -- tebuconazole -- Agricultural chemicals -- Emulsification -- Encapsulation -- Fungicides -- Anti-fungal activity -- Average diameter -- Encapsulation efficiency -- Fusarium moniliforme -- Micro-particles -- Phytopathogenic fungi -- Poly-3-hydroxybutyrate -- Tebuconazole -- Fungi
Аннотация: In this study, tebuconazole (TEB)-loaded poly-3-hydroxybutyrate (P3HB)-based microparticles were developed and comprehensively characterized. TEB-loaded microparticles with the initial loading amounts of the fungicide of 10, 25, and 50% of the polymer mass (TEB 10, TEB 25, and TEB 50%) were prepared using emulsion technique. Encapsulation efficiency of TEB varied from 59 to 86%. As the loading amount was increased, the average diameter of microparticles increased too, from 41.3 to 71.7 µm, while zeta potential was not influenced by TEB loading, varying between –32.6 and –35.7 mV. TEB was gradually released from the microparticles to the model medium, and after 60 d, from 25 to 43% of TEB was released depending on the content of the encapsulated fungicide. The data obtained from in vitro TEB release were fitted to different mathematical models. It was shown that the release profiles of TEB could be best explained by the Zero-order, Higuchi, and Hixson–Crowell models. The antifungal activity of the P3HB/TEB microparticles against phytopathogenic fungi Fusarium moniliforme and Fusarium solani was demonstrated by in vitro tests conducted in Petri dishes. Thus, hydrophobic agrochemicals (TEB) can be effectively encapsulated into P3HB microparticles to construct slow-release formulations. © 2019, © 2019 Informa UK Limited, trading as Taylor & Francis Group.

Scopus,
Смотреть статью,
WOS
Держатели документа:
Siberian Federal University, Institute of Fundamental Biology and Biotechnology, Krasnoyarsk, Russian Federation
Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Shershneva, A. M.; Murueva, A. V.; Zhila, N. O.; Volova, T. G.

Найти похожие

Biophysics to Ecology / I. I. Gitel’zon // Her. Russ. Acad. Sci. - 2019. - Vol. 89, Is. 6. - P523-534, DOI 10.1134/S1019331619060066 . - ISSN 1019-3316
Кл.слова (ненормированные):
bioluminescence -- bioluminescent analysis -- biophysics -- biopolymers -- biosynthesis -- biotechnology -- closed ecosystem -- hydrogen biosynthesis -- life support -- noosphere
Аннотация: Abstract: This report presents some new methodological opportunities that biophysics can offer for solving the fundamental problem of planetary ecology—deciphering the mechanism that maintains the equilibrium state of the biosphere. The Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, where the author of this report works, is developing two complementary directions in ecological biophysics. The first is monitoring the vital activity of natural and constructed ecosystems by optical methods using the example of bioluminescence of the sea and closed ecosystems, and the second is studying the laws of parametric biosynthesis control and creating biotechnological control systems for these processes in order to construct noosphere-like ecosystems, in particular, for human life-support and survival systems in extreme conditions on the Earth and in space. © 2019, Pleiades Publishing, Ltd.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Gitel’zon, I. I.

Найти похожие

Biophysics to Ecology / I. I. Gitel'zon // Her. Russ. Acad. Sci. - 2019. - Vol. 89, Is. 6. - P523-534, DOI 10.1134/S1019331619060066. - Cited References:25 . - ISSN 1019-3316. - ISSN 1555-6492

РУБ History & Philosophy Of Science + Multidisciplinary Sciences

Кл.слова (ненормированные):
biophysics -- biotechnology -- biosynthesis -- biopolymers -- bioluminescence -- bioluminescent analysis -- hydrogen biosynthesis -- noosphere -- life support -- closed ecosystem
Аннотация: This report presents some new methodological opportunities that biophysics can offer for solving the fundamental problem of planetary ecology-deciphering the mechanism that maintains the equilibrium state of the biosphere. The Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, where the author of this report works, is developing two complementary directions in ecological biophysics. The first is monitoring the vital activity of natural and constructed ecosystems by optical methods using the example of bioluminescence of the sea and closed ecosystems, and the second is studying the laws of parametric biosynthesis control and creating biotechnological control systems for these processes in order to construct noosphere-like ecosystems, in particular, for human life-support and survival systems in extreme conditions on the Earth and in space.

WOS
Держатели документа:
Russian Acad Sci, Inst Biophys, Siberian Branch, Krasnoyarsk, Russia.
Russian Acad Sci, Krasnoyarsk, Russia.

Доп.точки доступа:
Gitel'zon, I. I.

Найти похожие

Towards biological quantity theory for nominal property metrology in polyenzymatic devices with living cells / P. I. Belobrov, A. A. Evstrapov, E. N. Esimbekova [et al.] // Journal of Physics: Conference Series : Institute of Physics Publishing, 2019. - Vol. 1379: Joint IMEKO TC1-TC7-TC13-TC18 Symposium 2019 (2 July 2019 through 5 July 2019, ) Conference code: 156337, Is. 1. - Ст. 012036, DOI 10.1088/1742-6596/1379/1/012036
Кл.слова (ненормированные):
Fluidic devices -- Industrial waste disposal -- Biological measurement -- Bioluminescent systems -- Continuous measurements -- Droplet-based microfluidics -- Industrial enterprise -- Microfluidic platforms -- Numerical variables -- Silicon photomultiplier -- Microfluidics
Аннотация: Here we discuss the concepts of "biological quantity" and "nominal property" within the framework of the problem of biological measurements based on new specific results of biological analysis using a microfluidic platform and chips developed by our team earlier. It was shown that based on different microfluidic platforms it is possible to develop chips with a polyenzymatic bioluminescent system NAD(P)H:FMN-oxidoreductase-luciferase (Red + Luc), which can be used in various areas of biological analysis. Thus, disposable microfluidic chips with Red + Luc system suitable for field and indoor use were developed using continuous flow microfluidic platform. The use of droplet-based microfluidic platform allowed to develop microfluidic chips with Red + Luc system for long-term continuous measurements of water samples, for example, in places of waste disposal by industrial enterprises. The reference for comparing different biological quantities with each other in the proposed system was a photodetector, which converted non-numeric values and nominal properties recorded by a biological module Red + Luc into numerical variables. Such a reference was implemented as a portable luminometer based on silicon photomultiplier. The results allow to perform other biological measurements and to start the discussion of modern biological concepts in the language of biological measures. © 2019 IOP Publishing Ltd. All rights reserved.

Scopus
Держатели документа:
Laboratory of Bioluminescent Biotechnology, Siberian Federal University, Krasnoyarsk, 660041, Russian Federation
Institute for Analytical Instrumentation RAS, St.-Petersburg, 190103, Russian Federation
Laboratory of Photobiology, Institute of Biophysics SB RAS, Krasnoyarsk, 660036, Russian Federation
Laboratory for Digital Controlled Drugs and Theranostics, Federal Research Center krasnoyarsk Science Center SB RAS, Krasnoyarsk, 660036, Russian Federation
Research Institute of Molecular Medicine and Pathobiochemistry, Krasnoyarsk State Medical University Named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, 660022, Russian Federation

Доп.точки доступа:
Belobrov, P. I.; Evstrapov, A. A.; Esimbekova, E. N.; Denisov, I. A.; Lukyanenko, K. A.; Osipova, E. D.; Yakimov, A. S.

Найти похожие

Estimation of the spatial distribution of spring barley yield using ground-based and satellite spectrophotometric data / A. P. Shevyrnogov [et al.] // IOP Conference Series: Earth and Environmental Science : Institute of Physics Publishing, 2019. - Vol. 315: International Scientific Conference on Agribusiness, Environmental Engineering and Biotechnologies, AGRITECH 2019 (20 June 2019 through 22 June 2019, ) Conference code: 152072, Is. 3. - Ст. 032023, DOI 10.1088/1755-1315/315/3/032023
Кл.слова (ненормированные):
Biotechnology -- Environmental technology -- Photomapping -- Seed -- Crop development -- Field experience -- Optical characteristics -- Precision agriculture technology -- Resource-saving technologies -- Spatial resolution -- Spring barley yields -- Vegetation index -- Spatial distribution
Аннотация: The article presents a method for estimating the spatial distribution of spring barley yield, based on the use of optical ground and satellite spectral data (PlanetScope data with a spatial resolution of 3 meters). This approach is highly relevant for the development of precision agriculture technologies. Yield mapping is carried out on the basis of data on the spatial distribution of the actual yield and the spatial distribution of the spectral optical characteristics. The method's characteristic feature is the use of the integral values of vegetation indices (NDVI, MSAVI2, ClGreen) at various stages of crop development. The method was tested on the basis of stationary field experience, where traditional agriculture (deep plowing) is compared with resource-saving technologies (subsurface and surface plowing, and direct seeding with zero tillage). © 2019 IOP Publishing Ltd. All rights reserved.

Scopus,
Смотреть статью
Держатели документа:
Institute of Biophysics SB RAS, Federal Research Center, Krasnoyarsk Science Center, SB RAS, Krasnoyarsk, Akademgorodok, 660036, Russian Federation
Krasnoyarsk State Agrarian University, Krasnoyarsk, 660049, Russian Federation

Доп.точки доступа:
Shevyrnogov, A. P.; Yu Botvich, I.; Yemelianov, D. V.; Larko, A. A.; Ivchenko, V. K.; Demianenko, T. N.

Найти похожие

10.

Transformation of soil and land resources of the Middle Siberia in the conditions of climatic changes / A. A. Shpedt, N. A. Ligaeva, D. V. Emelyanov // IOP Conference Series: Earth and Environmental Science : Institute of Physics Publishing, 2019. - Vol. 315: International Scientific Conference on Agribusiness, Environmental Engineering and Biotechnologies, AGRITECH 2019 (20 June 2019 through 22 June 2019, ) Conference code: 152072, Is. 5. - Ст. 052051, DOI 10.1088/1755-1315/315/5/052051
Кл.слова (ненормированные):
Biotechnology -- Cultivation -- Environmental technology -- Natural resources -- Annual mean -- Climatic changes -- Land resources -- Linear trends -- SIBERIA -- Soil cover -- Soil property -- Soils
Аннотация: The paper describes the fields of transformation of soil and land resources of the Middle Siberia as the result of long-term climatic changes. The description of soil and land resources is given. The climatic changes have been evaluated for the period from 1919 to 2018, and increase of the annual mean air temperature and amount of precipitation in natural zones of the region has been established on the basis of the analysis of linear trends. Under the impact of these factors, shifting of zone borders occurs, which leads to replacement of the soil cover structure at the species, generic and subtype levels. Changing regimes and soil properties cause the necessity to use new sorts and adapted technologies for crop growing. © 2019 IOP Publishing Ltd. All rights reserved.

Scopus,
Смотреть статью
Держатели документа:
Krasnoyarsk Research Institute of Agriculture SB RAS, Federal Research Center Krasnoyarsk Science Center SB RAS, 66 Svobodny Av, Krasnoyarsk, 660037, Russian Federation
Siberian Federal University, 79 Svobodny avenue, Krasnoyarsk, 660041, Russian Federation
Institute of Biophysics SB RAS, Federal Research Center Krasnoyarsk Science Center SB RAS, Krasnoyarsk 660036, Akademgorodok, Russian Federation

Доп.точки доступа:
Shpedt, A. A.; Ligaeva, N. A.; Emelyanov, D. V.

Найти похожие

11.

An elementary multistage discrete model of soil organic matter transformations with a continuous scale of stability / S. I. Bartsev, A. A. Pochekutov // Ecol. Model. - 2019. - Vol. 393. - P61-65, DOI 10.1016/j.ecolmodel.2018.12.012 . - ISSN 0304-3800
Кл.слова (ненормированные):
Kinetics of soil organic matter transformations -- Model of soil organic matter transformations -- Soil organic matter -- Biogeochemistry -- Biological materials -- Decay (organic) -- Organic compounds -- Soils -- Continuous scale -- Discrete modeling -- Elementary model -- Law of mass action -- Multistage process -- Realistic model -- Soil organic matters -- Transformation process -- Mathematical transformations -- biotransformation -- chemical alteration -- decomposition -- numerical model -- reaction kinetics -- soil organic matter
Аннотация: The proposed elementary mathematical model of formation and decomposition of soil organic matter (SOM) is based on using equations of chemical kinetics to describe the multistage process of SOM transformation. The model both describes each step of transformation in accordance with the law of mass action and postulates the trend of increasing stability of the matter towards further transformation, which is common for all steps. Analysis of the model demonstrates that it is extremely difficult to construct a realistic model of SOM dynamics by assembling elementary models of the type presented in this study into the full description of SOM transformation processes. © 2018 Elsevier B.V.

Scopus,
Смотреть статью,
WOS
Держатели документа:
Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Krasnoyarsk, Russian Federation
Institute of Fundamental Biology and Biotechnology of Siberian Federal University, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Bartsev, S. I.; Pochekutov, A. A.

Найти похожие

12.

Biosynthesis and properties of P(3HB-co-3HV-co-3H4MV) produced by using the wild-type strain Cupriavidus eutrophus B-10646 / T. Volova [et al.] // Journal of Chemical Technology and Biotechnology. - 2018, DOI 10.1002/jctb.5763 . - Article in press. - ISSN 0268-2575
Кл.слова (ненормированные):
3-hydroxy-4-methylvalerate -- physicochemical properties -- polyhydroxyalkanoates -- synthesis -- Biochemistry -- Chemical industry -- Synthesis (chemical) -- 3-hydroxy-4-methylvalerate -- Crystalline-to-amorphous -- Degree of crystallinity -- Degrees of crystallinity -- Physicochemical property -- Polyhydroxyalkanoates -- Processing properties -- Wild-type strain -- Polymers
Аннотация: BACKGROUND: Polyhydroxyalkanoates (PHA) containing 3-hydroxy-4-methylvalerate (3H4MV) have better processing properties than other PHA types and were not prone to ageing. The main challenge in the production of these polymers is to simultaneously achieve high cell biomass, high polymer content, and high molar fraction of 3H4MV. The aim of this study was to investigate the production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate-co-3-hydroxy-4-methylvalerate) [P(3HB-co-3 HV-co-3H4MV)] by Cupriavidus eutrophus B-10646, synthesize polymers with different contents of 3H4MV and investigate their properties. RESULTS: It was shown that 4-methylvalerate (4MV, the precursor substrate) concentration in the culture medium must not be higher than 1 g L?1, and that 4MV must be carefully dosed, with at least 10–12 h intervals between supplementations. A series of polymers with molar fractions of 3H4MV between 2.7 and 11.3 mol% was synthesized. Degrees of crystallinity, molecular weight characteristics, and thermal properties of the polymers have been investigated as dependent on proportions of monomers. CONCLUSION: The content of 3H4MV depends on the concentration of 4MV and conditions of carbon nutrition. The molar fraction of 3H4MV had a strong effect on the crystalline to amorphous region ratio. PHA containing 3H4MV specimens synthesized in this study had a degree of crystallinity of below 50%, which remained unchanged for 2.5 years. © 2018 Society of Chemical Industry. © 2018 Society of Chemical Industry

Scopus,
Смотреть статью,
WOS
Держатели документа:
Siberian Federal University, Krasnoyarsk, Russian Federation
Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Krasnoyarsk, Russian Federation
L.V. Kirenskii Institute of Physics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Krasnoyarsk, Russian Federation
Institute of Chemistry and Chemical Technology SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Krasnoyarsk, Russian Federation
International and Inter University Centre of Nanoscience and Nanotechnology, Mahatam Gandhi University, Kottyam, India

Доп.точки доступа:
Volova, T.; Menshikova, O.; Zhila, N.; Vasiliev, A.; Kiselev, E.; Peterson, I.; Shishatskaya, E.; Thomas, S.

Найти похожие

13.

Effect of viscosity on efficiency of enzyme catalysis of bacterial luciferase coupled with lactate dehydrogenase and NAD(P)H:FMN-Oxidoreductase / O. S. Sutormin [et al.] // Mol. Cat. - 2018. - Vol. 458. - P60-66, DOI 10.1016/j.mcat.2018.08.012 . - ISSN 2468-8231
Кл.слова (ненормированные):
Bioluminescence -- Coupling of enzymes -- In vivo simulated media -- Metabolic chain -- Protein stability
Аннотация: One of the current trends of the modern biology figures out cellular enzyme behaviour. Numerous researches look more closely at the chemical composition of creating in vivo simulated media conditions. The aim of this work was to find out a thermodynamic cooperativity of enzymes in a triple-enzyme chain (lactate dehydrogenase + NAD(P)H: FMN-oxidoreductase + bacterial luciferase) under in vivo simulated condition. The thermodynamic cooperativity effects were found out based on the influence of the viscogens (glycerol and sucrose) on the thermal stability of the triple-enzyme system. The results showed that the viscogens do not lead to an increase in the thermal stability of the triple-enzyme system. In addition, organic solvents (sucrose and glycerol) added as viscous agents to the reaction medium altered the kinetics of this triple-enzyme chain, including changing the light emission decay constant (kdec) and quantum yield of luminescence (Q). Plus, sucrose was found to be more efficient in limiting the flexibility of enzymes than glycerol. The high sensitivity of the triple-enzyme system to the viscogens may be connected with a fact that lactate dehydrogenase does not bound with couple enzyme system NAD(P)H: FMN-oxidoreductase + bacterial luciferase inside the real cell. Since this approach may be used as a method to understand the real connection between enzymes in cellular multi-enzyme metabolic chains inside the luminous bacteria cell. © 2018 Elsevier B.V.

Scopus,
Смотреть статью,
WOS
Держатели документа:
Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russian Federation
Institute of Biophysics, Russian Academy of Sciences, Siberian Branch, Federal Research Center ‘Krasnoyarsk Science Center SB RAS’, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Sutormin, O. S.; Sukovataya, I. E.; Pande, S.; Kratasyuk, V. A.

Найти похожие

14.

Production and properties of bacterial cellulose by the strain Komagataeibacter xylinus B-12068 / T. G. Volova [et al.] // Appl. Microbiol. Biotechnol. - 2018. - P1-12, DOI 10.1007/s00253-018-9198-8 . - ISSN 0175-7598
Кл.слова (ненормированные):
Bacterial cellulose -- Growth conditions -- Komagataeibacter xylinus -- Biocompatibility -- Cell culture -- Cellulose -- Cultivation -- Glucose -- 3t3 mouse fibroblasts -- Bacterial cellulose -- Cultivation conditions -- Emission spectrometry -- Ethanol concentrations -- Growth conditions -- Komagataeibacter xylinus -- Physical and mechanical properties -- Substrates
Аннотация: A strain of acetic acid bacteria, Komagataeibacter xylinus B-12068, was studied as a source for bacterial cellulose (BC) production. The effects of cultivation conditions (carbon sources, temperature, and pH) on BC production and properties were studied in surface and submerged cultures. Glucose was found to be the best substrate for BC production among the sugars tested; ethanol concentration of 3% (w/v) enhanced the productivity of BC. Optimization of medium and cultivation conditions ensures a high production of BC on glucose and glycerol, up to 2.4 and 3.3 g/L/day, respectively. C/N elemental analysis, emission spectrometry, SEM, DTA, and X-ray were used to investigate the structure and physical and mechanical properties of the BC produced under different conditions. MTT assay and SEM showed that native cellulose membrane did not cause cytotoxicity upon direct contact with NIH 3T3 mouse fibroblast cells and was highly biocompatible. © 2018 Springer-Verlag GmbH Germany, part of Springer Nature

Scopus,
Смотреть статью,
WOS
Держатели документа:
Siberian Federal University, 79 Svobodny pr, Krasnoyarsk, Russian Federation
Institute of Biophysics SB RAS, Siberian Federal University, Akademgorodok 50/50, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Volova, T. G.; Prudnikova, S. V.; Sukovatyi, A. G.; Shishatskaya, E. I.

Найти похожие

15.

Methanolobus psychrotolerans sp. nov., a psychrotolerant methanoarchaeon isolated from a saline meromictic lake in siberia / S. -C. Chen [et al.] // Int. J. Syst. Evol. Microbiol. - 2018. - Vol. 68, Is. 4. - P1378-1383, DOI 10.1099/ijsem.0.002685 . - ISSN 1466-5026
Кл.слова (ненормированные):
Archaea -- Lake shira -- Methanogen -- Methanolobus -- Psychrotolerant -- Saline meromictic lake
Аннотация: A psychrotolerant, methylotrophic methanogen, strain YSF-03T, was isolated from the saline meromictic Lake Shira in Siberia. Cells of strain YSF-03T were non-motile, irregular cocci and 0.8–1.2?m in diameter. The methanogenic substrates utilized by strain YSF-03T were methanol and trimethylamine. The temperature range of growth for strain YSF-03T was from 0 to 37 °C. The optimum growth conditions were 30–37 °C, pH 7.0–7.4 and 0.17M NaCl. The G+C content of the genome of strain YSF-03T was 41.3 mol%. Phylogenetic analysis revealed that strain YSF-03T was most closely related to Methanolobus profundi MobMT (98.15% similarity in 16S rRNA gene sequence). Genome relatedness between strain YSF-03T and MobMT was computed using the Genome-to-Genome Distance Calculator and average nucleotide identity, which gave values of 23.5 and 79.3 %, respectively. Based on the morphological, phenotypic, phylogenetic and genomic relatedness data presented here, it is evident that strain YSF-03T represents a novel species of the genus Methanolobus, for which the name Methanolobus psychrotolerans sp. nov. is proposed. The type strain is YSF-03T (=BCRC AR10049T=DSM 104044T=NBRC 112514T). © 2018 IUMS.

Scopus,
Смотреть статью,
WOS
Держатели документа:
Department of Life Science, National Chung Hsing University, Taiwan
Agricultural Biotechnology Center, National Chung Hsing University, Taiwan
Biodiversity Research Center, Academia Sinica, Taiwan
Institute of Biophysics Siberian Branch, Russian Academy of Sciences, Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Chen, S. -C.; Huang, H. -H.; Lai, M. -C.; Weng, C. -Y.; Chiu, H. -H.; Tang, S. -L.; Rogozin, D. Y.; Degermendzhy, A. G.

Найти похожие

16.

Siberian plants: untapped repertoire of bioactive endosymbionts / S. Baker, S. V. Prudnikova, T. Volova // Front. Biol. - 2018. - P1-11, DOI 10.1007/s11515-018-1483-5 . - ISSN 1674-7984
Кл.слова (ненормированные):
bioactive metabolite -- endophyte -- endosymbiont -- novel compound -- siberian plant
Аннотация: Background: Endosymbionts are microorganisms present in all plant species, and constitute the subject of interest among the scientific community. These symbionts have gained considerable attention in recent years, owing to their emerging biological roles. Global challenges, such as antimicrobial resistance, treatment of infectious diseases such as HIV and tuberculosis, cancer, and many genetic disorders, exist. Endosymbionts can help address these challenges by secreting valueadded bioactive compounds with various activities. Objective: Herein, we describe the importance of plants inhabiting Siberian niches. These plants are considered to be among the least studied organisms in the plant kingdom worldwide. Barcoding these plants can be of interest for exploring bioactive endosymbionts possessing myriad biological properties. Methods: A systematic survey of relevant scientific reports was conducted using the PubMed search engine. The reports were analyzed, and compiled to draft this review. Results: The literature survey on Siberian plants regarding endosymbionts included a few reports, since extremely few exploratory studies have been conducted on the plants in these regions. Studies on the endosymbionts of these plants are highly valuable, as they report potent endosymbionts possessing numerous biological properties. Based on these considerations, this review aims to create awareness among the global scientific community working on related areas. Conclusion: This review could provide the basis for barcoding novel endosymbionts of Siberian plants and their ecological importance, which can be exploited in various sectors. The main purpose of this review is to create awareness of Siberian plants, which are among the least studied organisms in the plant kingdom, with respect to endosymbionts, among the scientific community. © 2018 Higher Education Press and Springer-Verlag GmbH Germany, part of Springer Nature

Scopus,
Смотреть статью
Держатели документа:
Laboratory of Biotechnology of New Materials, Siberian Federal University, 79 Svobodny pr., Krasnoyarsk, Russian Federation
Siberian Federal University, School of Fundamental Biology and Biotechnology, 79 Svobodny pr., Krasnoyarsk, Russian Federation
Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS,”, 50/50 Akademgorodok, Krasnoyarsk, Russian Federation
Siberian Federal University, 79 Svobodny pr., Krasnoyarsk, Russian Federation

Доп.точки доступа:
Baker, S.; Prudnikova, S. V.; Volova, T.

Найти похожие

17.

Polyhydroxyalkanoate synthesis based on glycerol and implementation of the process under conditions of pilot production / T. Volova [et al.] // Appl. Microbiol. Biotechnol. - 2018, DOI 10.1007/s00253-018-9460-0 . - Article in press. - ISSN 0175-7598
Кл.слова (ненормированные):
Glycerol -- Polyhydroxyalkanoates -- Productivity -- Properties -- Synthesis -- Batch cell culture -- Fermentation -- Organic polymers -- Pilot plants -- Productivity -- Purification -- Synthesis (chemical) -- Degree of crystallinity -- Fed-batch fermentation -- Poly-3-hydroxybutyrate -- Poly-hydroxyalkanoate -- Polyhydroxyalkanoates -- Properties -- Temperature characteristic -- Volumetric productivity -- Glycerol
Аннотация: The present study addresses the synthesis and properties of polyhydroxyalkanoates (PHA) of different composition synthesized by Cupriavidus eutrophus B-10646 using glycerol as a carbon substrate. Poly(3-hydroxybutyrate) [P(3HB)] was effectively synthesized in fed-batch culture in a 30-L fermenter on glycerol of various purification degrees, with 99.5, 99.7, and 82.1% content of the main component. Purified glycerol (99.7%) was used for 150-L pilot scale fermentation. The total biomass and P(3HB) concentration reached 110 and 85.8 g/L, respectively, after 45 h of fed-batch fermentation. An average volumetric productivity of P(3HB) was 1.83 g/(L h). The degree of crystallinity and molecular weight of P(3HB) synthesized on glycerol were lower than and temperature characteristics were the same as those of P(3HB) synthesized on sugars. © 2018, Springer-Verlag GmbH Germany, part of Springer Nature.

Scopus,
Смотреть статью,
WOS
Держатели документа:
Siberian Federal University, 79 Svobodnyi Ave, Krasnoyarsk, 660041, Russian Federation
Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Akademgorodok, Krasnoyarsk, 660036, Russian Federation

Доп.точки доступа:
Volova, T.; Demidenko, A.; Kiselev, E.; Baranovskiy, S.; Shishatskaya, E.; Zhila, N.

Найти похожие

18.

Is Body Mass Index a potential biomarker for anemia in obese adolescents? / S. Pande, R. Ranjan, V. A. Kratasyuk // J. Nutr. Intermediary Metab. - 2019. - Vol. 15. - P1-2, DOI 10.1016/j.jnim.2018.11.001 . - ISSN 2352-3859
Кл.слова (ненормированные):
Anemia -- Body Mass Index -- Hepcidin -- Leptin -- Obesity
Аннотация: The two paradoxical major health problems namely obesity and anemia are confirmed to affect millions around the world. Hepcidin, a protein synthesized in liver is a negative iron binding regulator. There is an affirmative relation between hepcidin and leptin levels and an inverse co-relation between hepcidin and iron status due to inflammation mediated by obesity in adolescents. So this implicates an alliance between anemia and obesity wherein weight reduction can be a powerful medium to improve iron absorption in obese adolescents. Also the Body Mass Index can serve as a preliminary non-invasive screening tool to identify potential adolescents prone to anemia. © 2018

Scopus,
Смотреть статью
Держатели документа:
Laboratory of Bioluminescent Biotechnologies, Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodny Prospect, Krasnoyarsk, 660041, Russian Federation
Institute of Biophysics SB RAS, Federal Research Center ‘Krasnoyarsk Science Center SB RAS’, Akademgorodok 50/50, Krasnoyarsk, 660036, Russian Federation

Доп.точки доступа:
Pande, S.; Ranjan, R.; Kratasyuk, V. A.

Найти похожие

19.

Effects of zooplankton carcasses degradation on freshwater bacterial community composition and implications for carbon cycling / O. V. Kolmakova [et al.] // Environ. Microbiol. - 2018, DOI 10.1111/1462-2920.14418 . - Article in press. - ISSN 1462-2912
Аннотация: Non-predatory mortality of zooplankton provides an abundant, yet, little studied source of high quality labile organic matter (LOM) in aquatic ecosystems. Using laboratory microcosms, we followed the decomposition of organic carbon of fresh 13C-labelled Daphnia carcasses by natural bacterioplankton. The experimental setup comprised blank microcosms, that is, artificial lake water without any organic matter additions (B), and microcosms either amended with natural humic matter (H), fresh Daphnia carcasses (D) or both, that is, humic matter and Daphnia carcasses (HD). Most of the carcass carbon was consumed and respired by the bacterial community within 15 days of incubation. A shift in the bacterial community composition shaped by labile carcass carbon and by humic matter was observed. Nevertheless, we did not observe a quantitative change in humic matter degradation by heterotrophic bacteria in the presence of LOM derived from carcasses. However, carcasses were the main factor driving the bacterial community composition suggesting that the presence of large quantities of dead zooplankton might affect the carbon cycling in aquatic ecosystems. Our results imply that organic matter derived from zooplankton carcasses is efficiently remineralized by a highly specific bacterial community, but does not interfere with the bacterial turnover of more refractory humic matter. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

Scopus,
Смотреть статью,
WOS
Держатели документа:
Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Krasnoyarsk, Russian Federation
Siberian Federal University, Institute of Fundamental Biology and Biotechnology, Krasnoyarsk, Russian Federation
Department of Experimental Limnology, Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany
GFZ German Research Centre for Geosciencess, Section 5.3 Geomicrobiology, Potsdam, Germany
Experimental Phycology and Culture Collection of Algae (SAG), University of Gottingen, Gottingen, Germany
Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany

Доп.точки доступа:
Kolmakova, O. V.; Gladyshev, M. I.; Fonvielle, J. A.; Ganzert, L.; Hornick, T.; Grossart, H. -P.

Найти похожие

20.

Development and characterization of ceftriaxone-loaded P3HB-based microparticles for drug delivery / A. V. Murueva [et al.] // Dry. Technol. - 2018, DOI 10.1080/07373937.2018.1487451 . - Article in press. - ISSN 0737-3937
Кл.слова (ненормированные):
Ceftriaxone -- drug release -- emulsification technique -- microbiological evaluation -- P3HB-microparticles -- spray-drying -- Drying -- Emulsification -- Encapsulation -- Functional polymers -- Spray drying -- Targeted drug delivery -- Anti-bacterial activity -- Ceftriaxone -- Double emulsifications -- Drug release -- Encapsulation efficiency -- Micro-particles -- Microbiological evaluation -- Polymeric microparticles -- Controlled drug delivery
Аннотация: In this study, polymer-based microparticles are used to improve the therapeutic properties of ceftriaxone (CEF) and render them safer. Poly-3-hydroxybutyrate (P3HB) and poly-3-hydroxybutyrate/polyethylene glycol (P3HB-PEG)-based microparticles were prepared by two methods: a double emulsification technique and spray-drying. The microparticles were characterized in terms of size and zeta potential, morphology, total drug loading and drug release. The microparticles had spherical shapes with diameters of a size range from 0.74 to 1.55 µm (emulsification technique) and from 3.84 to 6.51 µm (spray-drying); CEF encapsulation efficiency was around 63% and 49% for these methods respectively. The CEF release from microparticles obtained by spray-drying reached 100% after 150 h, while for microparticles obtained by emulsification technique the total release of CEF did not exceed 34% after 312 h. The release profiles could be best explained by Zero order kinetics model, Higuchi and Korsmeyer-Peppas models, as the plots showed high linearity. Antibacterial activity of the microparticles was evaluated against gram-positive and gram-negative bacterial strains. In general, CEF encapsulation in polymeric microparticles preserves the therapeutic efficacy of the CEF and provides its prolonged effect. © 2018, © 2018 Taylor & Francis.

Scopus,
Смотреть статью,
WOS
Держатели документа:
Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Krasnoyarsk, Russian Federation
Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Murueva, A. V.; Shershneva, A. M.; Abanina, K. V.; Prudnikova, S. V.; Shishatskaya, E. I.

Найти похожие