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A comparative study of biota and sediments as monitors of plutonium in the Yenisei River (Siberia, Russia) / T. A. Zotina, M. S. Melgunov, D. V. Dementyev [et al.] // J. Environ. Radioact. - 2021. - Vol. 237. - Ст. 106723, DOI 10.1016/j.jenvrad.2021.106723. - Cited References:50. - The authors are grateful to the staff of the Radioecology Laboratory (Institute of Biophysics SB RAS, Krasnoyarsk) and the head of the Laboratory, Dr. Alexander Bolsunovsky, for their help in sample collection and processing, to Irina Makarova (Institute of Geology and Mineralogy SB RAS, Novosibirsk) for radiochemical separation of plutonium, and to Elena Krasova for linguistic check and improvements. We also appreciate comments of anonymous reviewers, which allowed us to improve our manuscript. The research was supported by the grants of Russian Foundation for Basic Research, Government of the Krasnoyarsk Territory, and Krasnoyarsk Regional Scientific Foundation No. 20-44-240004 and 18-44-240003, and the State Assignment for Fundamental Research to IBP SB RAS and IGM SB RAS. . - ISSN 0265-931X. - ISSN 1879-1700

РУБ Environmental Sciences
Рубрики:
PU-240/PU-239 ATOM RATIO
ARTIFICIAL RADIONUCLIDES
WATER
Кл.слова (ненормированные):
Americium -- Cesium -- Submerged macrophyte -- Zoobenthos
Аннотация: MOX-fuel production and spent nuclear fuel reprocessing started recently at the Mining-and-Chemical Combine (MCC, Zheleznogorsk, Russia) have caused an increase in controlled releases of plutonium to the Yenisei River. In this study, we analyzed time-dependent trends of plutonium (239,240Pu and 238Pu) in biota and bottom sediments of the Yenisei during 2008-2019, to estimate comparatively the potential of abundant representatives of biota as bio-monitors of contamination of the Yenisei by plutonium. Gamma-emitting radionuclides (40 K; 60Co; 137Cs; 152Eu; 241Am) were measured in environmental samples of the Yenisei as well. Samples of bottom sediments, water moss (Fontinalis antipyretica), shining pondweed (Potamogeton lucens), caddisfly larvae with casings (Apatania crymophila), and amphipods (Eulimnogammarus viridis and Palaseopsis cancelloides) were collected downstream and upstream of the radioactive discharge site. Environmental samples of the Yenisei collected downstream of the radioactive discharge site differed considerably in activity concentrations of plutonium but were similar in time-dependent trends of plutonium, reflecting the trends of annual discharges of plutonium. In 2018, the year of a sharp increase in controlled discharge of plutonium, the concentration of 239,240Pu in water moss (26 Bq kg-1 d.w.) was higher than in sediments (14 Bq kg-1 d.w.). In other years, the highest activity concentration of 2391,240Pu was observed in bottom sediments. In view of the higher magnitude of increase in plutonium concentration, water moss and shining pondweed can be considered as more sensitive indicators of increased fresh releases of plutonium than bottom sediments. Taking into account the food-related mechanism of plutonium uptake by amphipods, this representative of biota can be regarded as a sensitive monitor of bioavailable plutonium in the Yenisei.

WOS
Держатели документа:
Russian Acad Sci, Siberian Branch, Krasnoyarsk Sci Ctr, Inst Biophys,Fed Res Ctr, 50-50 Akademgorodok, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Inst Fundamental Biol & Biotechnol, 79 Svobodny Av, Krasnoyarsk 660041, Russia.
Russian Acad Sci, Siberian Branch, Inst Geol & Mineral, 3 Academician Koptyug Av, Novosibirsk 630090, Russia.

Доп.точки доступа:
Zotina, Tatiana A.; Melgunov, Michail S.; Dementyev, D. V.; Miroshnichenko, L. V.; Alexandrova, Y. V.; Russian Foundation for Basic Research, Government of the Krasnoyarsk Territory; Krasnoyarsk Regional Scientific Foundation [20-44-240004, 18-44-240003]; State Assignment for Fundamental Research

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Metabolic activity of cryogenic soils in the subarctic zone of Siberia towards "green" bioplastics / S. V. Prudnikova, S. Y. Evgrafova, T. G. Volova // Chemosphere. - 2021. - Vol. 263. - Ст. 128180, DOI 10.1016/j.chemosphere.2020.128180. - Cited References:101. - This study (polymer synthesis and investigation) was financially supported by Project "Agropreparations of the new generation: a strategy of construction and realization" (Agreement No 074-02-2018-328) in accordance with Resolution No 220 of the Government of the Russian Federation of April 9, 2010, "On measures designed to attract leading scientists to the Russian institutions of higher learning", and by the State assignment of the Ministry of Science and Higher Education of the Russian Federation No. FSRZ-2020-0006 (investigation of polymer degradation in soils of Evenkia). . - ISSN 0045-6535. - ISSN 1879-1298

РУБ Environmental Sciences

Кл.слова (ненормированные):
Siberian cryogenic soils -- P(3HB) bioplastic -- metabolic activity -- structure of microbial community -- P(3HB)-degrading strains -- P(3HB) -- properties
Аннотация: The present study investigates, for the first time, the structure of the microbial community of cryogenic soils in the subarctic region of Siberia and the ability of the soil microbial community to metabolize degradable microbial bioplastic - poly-3-hydroxybutyrate [P(3HB)]. When the soil thawed, with the soil temperature between 5-7 and 9-11 degrees C, the total biomass of microorganisms at a 10-20-cm depth was 226-234 mg g(-1) soil and CO2 production was 20-46 mg g(-1)W day(-1). The total abundance of microscopic fungi varied between (7.4 +/- 2.3) x 10(3) and (18.3 +/- 2.2) x 10(3) CFU/g soil depending on temperature; the abundance of bacteria was several orders of magnitude greater: (1.6 +/- 0.1) x 10(6) CFU g(-1) soil. The microbial community in the biofilm formed on the surface of P(3HB) films differed from the background soil in concentrations and composition of microorganisms. The activity of microorganisms caused changes in the surface microstructure of polymer films, a decrease in molecular weight, and an increase in the degree of crystallinity of P(3HB), indicating polymer biodegradation due to metabolic activity of microorganisms. The clear-zone technique e plating of isolates on the mineral agar with polymer as sole carbon source e was used to identify P(3HB)-degrading microorganisms inhabiting cryogenic soil in Evenkia. Analysis of nucleotide sequences of rRNA genes was performed to identify the following P(3HB)degrading species: Bacillus pumilus, Paraburkholderia sp., Pseudomonas sp., Rhodococcus sp., Stenotrophomonas rhizophila, Streptomyces prunicolor, and Variovorax paradoxus bacteria and the Penicillium thomii, P. arenicola, P. lanosum, Aspergillus fumigatus, and A. niger fungi. (C) 2020 Elsevier Ltd. All rights reserved.

WOS
Держатели документа:
Siberian Fed Univ, 79 Svobodny Pr, Krasnoyarsk 660041, Russia.
Krasnoyarsk Sci Ctr SB RAS, Fed Res Ctr, VN Sukachev Inst Forest, 50-28 Akademgorodok, Krasnoyarsk 660036, Russia.
Krasnoyarsk Sci Ctr SB RAS, Fed Res Ctr, Inst Biophys SB RAS, 50-50 Akademgorodok, Krasnoyarsk 660036, Russia.
SB RAS, Melnikov Permafrost Inst, 36 Merzlotnaya St, Yakutsk 677010, Russia.

Доп.точки доступа:
Prudnikova, Svetlana, V; Evgrafova, Svetlana Yu; Volova, Tatiana G.; Project "Agropreparations of the new generation: a strategy of construction and realization" [074-02-2018-328]; Government of the Russian Federation [220]; Ministry of Science and Higher Education of the Russian Federation [FSRZ-2020-0006]

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Assessment of the efficacy of slow-release formulations of the tribenuron-methyl herbicide in field-grown spring wheat / T. G. Volova, N. L. Kurachenko, V. L. Bopp [et al.] // Environ. Sci. Pollut. Res. - 2021, DOI 10.1007/s11356-021-17195-x. - Cited References:72. - The work on production and investigation of polymer films was carried out as part of the State Assignment of the Ministry of Education and Science of the Russian Federation [Grant No. 074-02-2018-328]. . - Article in press. - ISSN 0944-1344. - ISSN 1614-7499

РУБ Environmental Sciences
Рубрики:
BIODEGRADABLE POLY-3-HYDROXYBUTYRATE
WILD MUSTARD
Кл.слова (ненормированные):
Tribenuron-methyl -- P(3HB) -- Slow-release formulations -- Spring wheat -- Weed -- control -- Yield structure -- Grain quality
Аннотация: The efficacy of slow-release formulations of tribenuron-methyl (TBM) embedded in the matrix of degradable poly(3-hydroxybutyrate) blended with birch wood flour [polymer/wood flour/herbicide 50/30/20 wt.%] was compared with the efficacy of TBM as the active ingredient of the Mortira commercial formulation, which was applied as post-emergence spray to treat spring wheat cv. Novosibirskaya 15. The study was conducted in Central Siberia (in the environs of the city of Krasnoyarsk, Russia) from May to August 2020. The biological efficacy of the embedded TBM was 92.3%, which was considerably higher than the biological efficacy of the Mortira formulation used as the post-emergence spray (15.4%). The embedding of TBM into degradable blended matrix enabled long-duration functioning of this unstable herbicide in soil. The sensitivity of weed plants to TBM differed depending on the species. TBM was more effective against A. retroflexus and A. blitoides, which were killed at an earlier stage, than against C. album and G. aparine, whose percentage increased in the earlier stage and which were controlled by the herbicide less effectively and at later stages. On the plot treated with the embedded herbicide, the parameters of the wheat yield structure were the best, and the total yield was the highest: 3360 +/- 40 kg/ha versus 3250 +/- 50 kg/ha in the group of plants sprayed with the Mortira formulation. The grain produced in all groups was of high quality and was classified as Grade 1 food grain. The highest quality parameters (grain hectoliter mass, gluten, and protein contents) were obtained in the group of plants treated with the embedded herbicide. The study of the embedded TBM confirmed the high efficacy of the experimental formulation.

WOS
Держатели документа:
Siberian Fed Univ, 79 Svobodnyi Ave, Krasnoyarsk 660041, Russia.
RAS, SB, Fed Res Ctr Krasnoyarsk Sci Ctr, Inst Biophys, 50-50 Akademgorodok, Krasnoyarsk 660036, Russia.
Krasnoyarsk State Agrarian Univ, 90 Mir Ave, Krasnoyarsk 660049, Russia.
Mahatma Gandhi Univ, Int & Inter Univ Ctr Nanosci & Nanotechnol, Kottayam 686560, Kerala, India.

Доп.точки доступа:
Volova, Tatiana G.; Kurachenko, Natalya L.; Bopp, Valentina L.; Thomas, Sabu; Demidenko, Aleksey V.; Kiselev, Evgeniy G.; Baranovsky, Sergey V.; Sukovatyi, Aleksey G.; Zhila, Natalia O.; Shishatskaya, Ekaterina I.; Ministry of Education and Science of the Russian FederationMinistry of Education and Science, Russian Federation [074-02-2018-328]

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Metabolic activity of cryogenic soils in the subarctic zone of Siberia towards “green” bioplastics / S. V. Prudnikova, S. Y. Evgrafova, T. G. Volova // Chemosphere. - 2021. - Vol. 263. - Ст. 128180, DOI 10.1016/j.chemosphere.2020.128180 . - ISSN 0045-6535
Кл.слова (ненормированные):
metabolic activity -- P(3HB) bioplastic -- P(3HB) properties -- P(3HB)-degrading strains -- Siberian cryogenic soils -- structure of microbial community -- Aspergillus -- Bacteriology -- Biodegradable polymers -- Biodegradation -- Cryogenics -- Crystallinity -- Metabolism -- Polymer films -- Reinforced plastics -- RNA -- Soils -- Aspergillus fumigatus -- Degree of crystallinity -- Microbial communities -- Nucleotide sequences -- Poly-3-hydroxybutyrate -- Polymer biodegradation -- Soil microbial community -- Surface microstructures -- Bacteria -- bacterial RNA -- fungal RNA -- mineral -- plastic -- poly(3 hydroxybutyric acid) -- polymer -- ribosome RNA -- RNA 16S -- RNA 18S -- RNA 28S -- RNA 5.8S -- abundance -- bacterium -- biodegradation -- biomass -- community structure -- concentration (composition) -- crystallinity -- fungus -- microbial community -- microstructure -- plastic -- polymer -- soil temperature -- subarctic region -- Actinobacteria -- Agrobacterium tumefaciens -- Antarctica -- Arctic -- Article -- Aspergillus fumigatus -- Aspergillus niger -- Bacilli -- Bacillus cereus -- Bacillus pumilus -- bacterial gene -- bacterium isolate -- biodegradability -- biodegradation -- biomass -- Chryseobacterium ioostei -- colony forming unit -- community structure -- concentration (parameter) -- cryogenic soil -- crystallization -- Cupriavidus necator -- ecosystem -- Escherichia coli -- Flavobacteria -- Flavobacterium -- fungal community -- fungal gene -- Fusarium fujikuroi -- Gammaproteobacteria -- green chemistry -- Lactobacterium helveticus -- metabolism -- microbial biomass -- microbial community -- molecular weight -- Mortierella alpina -- Mycobacterium -- Mycobacterium pseudoshotsii -- Nocardioides -- nucleotide sequence -- nucleotide sequence -- Paenibacillus -- Paraburkholderia -- Penicillium -- Penicillium arenicola -- Penicillium glabrum -- Penicillium lanosum -- Penicillium restrictum -- Penicillium spinulosum -- Penicillium thomii -- phylogeny -- Pseudomonas -- Rhizopus oryzae -- Rhodococcus -- RNA sequence -- Russian Federation -- soil -- soil microflora -- soil temperature -- species composition -- Stenotrophomonas -- Streptomyces -- Streptomyces prunicolor -- surface property -- temperature dependence -- thawing -- Variovorax paradoxus -- zpseudomonas lutea -- Siberia -- Aspergillus fumigatus -- Bacillus pumilus -- Bacteria (microorganisms) -- Fungi -- Penicillium thomii -- Pseudomonas sp. -- Rhodococcus sp. -- Stenotrophomonas rhizophila -- Streptomyces prunicolor -- Variovorax paradoxus
Аннотация: The present study investigates, for the first time, the structure of the microbial community of cryogenic soils in the subarctic region of Siberia and the ability of the soil microbial community to metabolize degradable microbial bioplastic – poly-3-hydroxybutyrate [P(3HB)]. When the soil thawed, with the soil temperature between 5-7 and 9–11 °C, the total biomass of microorganisms at a 10-20-cm depth was 226–234 mg g?1 soil and CO2 production was 20–46 mg g?1 day?1. The total abundance of microscopic fungi varied between (7.4 ± 2.3) ? 103 and (18.3 ± 2.2) ? 103 CFU/g soil depending on temperature; the abundance of bacteria was several orders of magnitude greater: (1.6 ± 0.1) ? 106 CFU g?1 soil. The microbial community in the biofilm formed on the surface of P(3HB) films differed from the background soil in concentrations and composition of microorganisms. The activity of microorganisms caused changes in the surface microstructure of polymer films, a decrease in molecular weight, and an increase in the degree of crystallinity of P(3HB), indicating polymer biodegradation due to metabolic activity of microorganisms. The clear-zone technique – plating of isolates on the mineral agar with polymer as sole carbon source – was used to identify P(3HB)-degrading microorganisms inhabiting cryogenic soil in Evenkia. Analysis of nucleotide sequences of rRNA genes was performed to identify the following P(3HB)-degrading species: Bacillus pumilus, Paraburkholderia sp., Pseudomonas sp., Rhodococcus sp., Stenotrophomonas rhizophila, Streptomyces prunicolor, and Variovorax paradoxus bacteria and the Penicillium thomii, P. arenicola, P. lanosum, Aspergillus fumigatus, and A. niger fungi. © 2020 Elsevier Ltd

Scopus
Держатели документа:
Siberian Federal University, 79 Svobodny Pr, Krasnoyarsk, 660041, Russian Federation
V.N. Sukachev Institute of Forest, Federal Research Center “Krasnoyarsk Science Center SB RAS”, 50/28 Akademgorodok, Krasnoyarsk, 660036, Russian Federation
Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, 50/50 Akademgorodok, Krasnoyarsk, 660036, Russian Federation
Melnikov Permafrost Institute, SB RAS, 36 Merzlotnaya St., Yakutsk, 677010, Russian Federation

Доп.точки доступа:
Prudnikova, S. V.; Evgrafova, S. Y.; Volova, T. G.

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Community structure and vertical distribution of planktonic ciliates in the saline meromictic lake Shira during breakdown of meromixis / E. B. Khromechek, Y. V. Barkhatov, D. Y. Rogozin // Ecohydrol. Hydrobiol. - 2021. - Vol. 21, Is. 1. - P142-152, DOI 10.1016/j.ecohyd.2020.08.001. - Cited References:41. - The authors are grateful to F.F. Kozlov, V.V. Zykov, and A.P. Tolomeev for their assistance during field studies. The present study was funded by RFBR and Krasnoyarsk Krai Government and the Krasnoyarsk Regional Fund of Science, project number 19-44-240002. The present study was financially supported by Russian Foundation for Basic Research (RFBR) Project No. 19-05-00428. . - ISSN 1642-3593. - ISSN 2080-3397

РУБ Ecology + Water Resources
Рубрики:
SHUNET SOUTH SIBERIA
   SEASONAL SUCCESSION
   PROTOZOA
   FOOD
Кл.слова (ненормированные):
Ciliates -- Meromictic lakes -- Chemocline -- Meromixis breakdown
Аннотация: The study deals with the vertical distribution and seasonal dynamics of planktonic ciliates in the pelagic and littoral zones of a saline meromictic Lake Shira. Fourteen species of free-living ciliates have been found in the Lake, seven of them inhabiting the pelagic zone. The richness of ciliates is higher both in terms of the number of species and biomass in the littoral zone compared to the pelagic zone. Although the ciliate species diversity is low in the pelagic zone, in certain seasons, the biomass of some of the species may reach considerable values, up to 3.4 g m(-2) in the water column. The biomass of ciliates in Lake Shira is generally comparable to the average values for other mesotrophic lakes. The abundance and composition of ciliate populations in Lake Shira vary considerably with depth. Changes in the Lake ecosystem caused by meromixis breakdown in 2015-2016, which induced considerable variations in many Lake components, affected the vertical distribution of planktonic ciliates. However, the annual average biomass of the species that inhabited the Lake before meromixis breakdown remained unchanged. The total ciliate biomass increased due to the presence of the new species. (C) 2021 European Regional Centre for Ecohydrology of the Polish Academy of Sciences. Published by Elsevier B.V. All rights reserved.

WOS
Держатели документа:
Russian Acad Sci, Inst Biophys, Siberian Branch, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Krasnoyarsk 660041, Russia.

Доп.точки доступа:
Khromechek, Elena B.; Barkhatov, Yuri, V; Rogozin, Denis Y.; Barkhatov, Yuri V.; RFBRRussian Foundation for Basic Research (RFBR); Krasnoyarsk Krai Government; Krasnoyarsk Regional Fund of Science [19-44-240002]; Russian Foundation for Basic Research (RFBR)Russian Foundation for Basic Research (RFBR) [19-05-00428]

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Salvaging high-quality genomes of microbial species from a meromictic lake using a hybrid sequencing approach / Y. H. Chen, P. W. Chiang, D. Y. Rogozin [et al.] // Commun. Biol. - 2021. - Vol. 4, Is. 1. - Ст. 996, DOI 10.1038/s42003-021-02510-6. - Cited References:99. - Y This work was supported by the Ministry of Science and Technology in Taiwan through the Taiwan-Russia Joint Project Grant NSC 102-2923-B-001-004-MY3 and Russian Foundation for Basic Research Grant 21-54-52001 and MOST 105-2923-B-001-001-MY3. Y.H.C. would like to acknowledge the Taiwan International Graduate Program (TIGP) for its fellowship towards his graduate studies. We would like to thank Noah Last of Third Draft Editing for his English language editing. . - ISSN 2399-3642

РУБ Biology + Multidisciplinary Sciences
Рубрики:
DIMETHYL SULFIDE
   SULFUR BACTERIUM
   SP-NOV.
   CHLAMYDIALES
   METAGENOME
Аннотация: Most of Earth's bacteria have yet to be cultivated. The metabolic and functional potentials of these uncultivated microorganisms thus remain mysterious, and the metagenome-assembled genome (MAG) approach is the most robust method for uncovering these potentials. However, MAGs discovered by conventional metagenomic assembly and binning are usually highly fragmented genomes with heterogeneous sequence contamination. In this study, we combined Illumina and Nanopore data to develop a new workflow to reconstruct 233 MAGs-six novel bacterial orders, 20 families, 66 genera, and 154 species-from Lake Shunet, a secluded meromictic lake in Siberia. With our workflow, the average N50 of reconstructed MAGs greatly increased 10-40-fold compared to when the conventional Illumina assembly and binning method were used. More importantly, six complete MAGs were recovered from our datasets. The recovery of 154 novel species MAGs from a rarely explored lake greatly expands the current bacterial genome encyclopedia. Chen and colleagues develop a workflow for assembling high quality metagenome-associated genomes for microbial species using long and short reads, in this case from a meromictic lake. A full, detailed workflow is provided in for use by the community.

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Держатели документа:
Natl Taiwan Univ, Taiwan Int Grad Program, Bioinformat Program, Taipei, Taiwan.
Acad Sinica, Taiwan Int Grad Program, Bioinformat Program, Inst Informat Sci, Taipei, Taiwan.
Acad Sinica, Biodivers Res Ctr, Taipei, Taiwan.
Russian Acad Sci, Siberian Branch, Inst Biophys, Krasnoyarsk, Russia.
Siberian Fed Univ, Krasnoyarsk, Russia.

Доп.точки доступа:
Chen, Yu-Hsiang; Chiang, Pei-Wen; Rogozin, Denis Yu; Degermendzhy, Andrey G.; Chiu, Hsiu-Hui; Tang, Sen-Lin; Ministry of Science and Technology in Taiwan through the Taiwan-Russia Joint Project [NSC 102-2923-B-001-004-MY3]; Russian Foundation for Basic Research GrantRussian Foundation for Basic Research (RFBR) [21-54-52001, MOST 105-2923-B-001-001-MY3]; Taiwan International Graduate Program (TIGP)

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Single-cell genomics-based analysis reveals a vital ecological role of thiocapsa sp. LSW in the meromictic Lake Shunet, Siberia / Y.-T. Wu, P.-W. Chiang, K. Tandon [et al.] // Microb. Genomics. - 2021. - Vol. 7, Is. 12. - Ст. 000712, DOI 10.1099/mgen.0.000712 . - ISSN 2057-5858
Кл.слова (ненормированные):
Flow cytometry -- Lake Shunet -- Purple sulfur bacteria -- Single-cell genomics -- genomic DNA -- RNA 16S -- Article -- bioinformatics -- carbon metabolism -- Enterobacter -- fluorescence activated cell sorting -- gene amplification -- gene ontology -- high throughput sequencing -- metagenomics -- microbial community -- microbial diversity -- molecular genetics -- nitrogen metabolism -- nonhuman -- nucleotide sequence -- phylogenetic tree -- phylogeny -- polymerase chain reaction -- Sanger sequencing -- Thiocapsa
Аннотация: Meromictic lakes usually harbour certain prevailing anoxygenic phototrophic bacteria in their anoxic zone, such as the purple sulfur bacterium (PSB) Thiocapsa sp. LSW (hereafter LSW) in Lake Shunet, Siberia. PSBs have been suggested to play a vital role in carbon, nitrogen and sulfur cycling at the oxic–anoxic interface of stratified lakes; however, the ecological significance of PSBs in the lake remains poorly understood. In this study, we explored the potential ecological role of LSW using a deep-sequencing analysis of single-cell genomics associated with flow cytometry. An approximately 2.7 Mb draft genome was obtained based on the co-assembly of five single-cell genomes. LSW might grow photolithoautotrophically and could play putative roles not only as a carbon fixer and diazotroph, but also as a sulfate reducer/oxidizer in the lake. This study provides insights into the potential ecological role of Thiocapsa sp. in meromictic lakes. © 2021 The Authors.

Scopus
Держатели документа:
Department of Forestry, National Pingtung University of Science and Technology, Pingtung, 91201, Taiwan
Biodiversity Research Center, Academia Sinica, Taipei, 115, Taiwan
Institute of Biophysics, Siberian Division of the Russian Academy of Sciences, Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Wu, Y. -T.; Chiang, P. -W.; Tandon, K.; Rogozin, D. Y.; Degermendzhy, A. G.; Tang, S. -L.

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Winter atmospheric nutrient and pollutant deposition on Western Sayan Mountain lakes (Siberia) / DQD Diaz, A. V. Ageev, E. A. Ivanova, O. V. Anishchenko // Biogeosciences. - 2021. - Vol. 18, Is. 5. - P1601-1618, DOI 10.5194/bg-18-1601-2021. - Cited References:86. - This research has been supported by the Russian Foundation for Basic Research (grant no. 20-04-00960) and the Ministry of Science and Higher Education of the Russian Federation (postdoctoral program project no. 5-100, grant no. FSRZ-2020-0014). . - ISSN 1726-4170. - ISSN 1726-4189

РУБ Ecology + Geosciences, Multidisciplinary
Рубрики:
FLY-ASH PARTICLES
NITROGEN DEPOSITION
PHOSPHORUS DEPOSITION
Аннотация: The world map of anthropogenic atmospheric nitrogen deposition and its effects on natural ecosystems is not described with equal precision everywhere. In this paper, we report atmospheric nutrient, sulfate and spheroidal carbonaceous particle (SCP) deposition rates, based on snowpack analyses of a formerly unexplored Siberian mountain region. Then, we discuss their potential effects on lake phytoplankton biomass limitation. We estimate that the nutrient depositions observed in the late-season snowpack (40 +/- 16 mgNO(3)-Nm(-2) and 0.58 +/- 0.13 mg TP-Pm-2; TP for total phosphorous) would correspond to yearly depositions lower than 119 +/- 71 mgNO(3)-Nm(-2) yr(-1) and higher than 1.71 +/- 0.91 mg TP-Pm-2 yr(-1). These yearly deposition estimates would approximately fit the predictions of global deposition models and correspond to the very low nutrient deposition range, although they are still higher than world background values. In spite of the fact that such a low atmospheric nitrogen deposition rate would be enough to induce nitrogen limitation in unproductive mountain lakes, phosphorus deposition was also extremely low, and the resulting lake water N: P ratio was unaffected by atmospheric nutrient deposition. In the end, the studied lakes' phytoplankton appeared to be split between phosphorus and nitrogen limitation. We conclude that these pristine lakes are fragile sensitive systems exposed to the predicted climate warming, increased winter precipitation, enhanced forest fires and shifts in anthropogenic nitrogen emissions that could finally couple their water chemistry to that of atmospheric nutrient deposition and unlock temperature-inhibited responses of phytoplankton to nutrient shifts.

WOS
Держатели документа:
Siberian Fed Univ, 79 Svobondyi Prospekt, Krasnoyarsk 660041, Krasnoyarsk Kra, Russia.
Russian Acad Sci, Siberian Branch, Inst Biophys, 50-50 Akademgorodok, Krasnoyarsk 660041, Krasnoyarsk Kra, Russia.

Доп.точки доступа:
Diaz, A. V.; Ageev, Aleksander Vladimirovich; Ivanova, Elena Anatolevna; Anishchenko, Olesia Valerevna; Russian Foundation for Basic ResearchRussian Foundation for Basic Research (RFBR) [20-04-00960]; Ministry of Science and Higher Education of the Russian Federation [5-100, FSRZ-2020-0014]

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To the question of genetic predisposition to the development of professional sensorineural hearing loss / E. E. Bashmakova, V. V. Krasitskaya, A. D. Yushkova [и др.] // Vestn. Otorinolaringologii. - 2021. - Vol. 86, Is. 1. - С. 15-19, DOI 10.17116/otorino20218601115 . - ISSN 0042-4668
Кл.слова (ненормированные):
Bioluminescent method of SNP genotyping -- Sensorineural hearing loss -- Single-nucleotide polymorphism (SNP)
Аннотация: Objective was to study single-nucleotide polymorphisms (SNP) in CAT, NCL, HSPA1L, PCDH15, and PON2 genes and their associations with hearing impairment among the people working among noise-exposed workers of the mashine-building plant (JSC «Krasmash», Krasnoyarsk, Eastern Siberia, Russia). Materials and methods. The 443 employees of Krasmash JSC, who have been working under conditions of increased noise for at least 1 year, were surveyed and examined. A hearing study was performed by speech and tonal audiometry. Tonal audiometry was carried out in accord with according to a standard method in the frequency range 125—8000 Hz. People with chronic hearing impairment, survivors of meningitis and family history of hearing impairment were excluded from the study. The allelic composition of the studied genes was determined in the remaining group of 288 workers (study group). Polymorphisms were detected using bioluminescent method, developed by the authors earlier. The study group comprised 122 people with hearing impairment (experimental group) and 166 people without impairment (control group). Results. The genotyping results of on allelic variants rs494024 (CAT), rs7598759 (NCL), rs2227956 (HSPA1L), rs7095441 (PCDH15) and rs7785846 (PON2) showed that their frequencies in the study group did not differ and were comparable with those for the European population. No statistically significant differences were revealed in the distribution of the genotypes of the studied mutations between the experimental and control groups. Also no statistically significant associations we found between hearing impairment and availability of two or several SNPs, or these SNPs and clinical characteristics of the disease (degree of hearing impairment, tinnitus). In the group of workers with an experience of 5 to 16 years, an association was found for hearing impairment and SNP rs494024, as well as when it is combined with rs7598759. Conclusions. The associations between SNP rs7598759, rs2227956, and rs7095441 and hearing impairment were not found. In the group of workers with 5—16 year experience, this association was found for SNP rs494024, as well as when it is combined with rs7598759. Discovered associations require further study. © 2021, Media Sphera Publishing Group. All rights reserved.

Scopus
Держатели документа:
Institute of Biophysics Siberian Branch of the Russian Academy of Sciences, Federal Research Center “Krasnoyarsk Science Center Siberian Branch of the Russian Academy of Sciences, Krasnoyarsk, Russian Federation
Clinical Hospital 122 named after L.G. Sokolov, FMBA of Russia, St. Petersburg, Russian Federation

Доп.точки доступа:
Bashmakova, E. E.; Krasitskaya, V. V.; Yushkova, A. D.; Dobrecov, K. G.; Frank, L. A.

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10.

11.

Single- cell genomics-based analysis reveals a vital ecological role of Thiocapsa sp. LSW in the meromictic Lake Shunet, Siberia / Y. T. Wu, P. W. Chiang, K. Tandon [et al.] // Microb. Genomics. - 2021. - Vol. 7, Is. 12. - Ст. 000712, DOI 10.1099/mgen.0.000712. - Cited References:69. - This research was funded by the Ministry of Science and Technology in Taiwan through the Taiwan-Russia Joint Project Grant NSC102--2923-B--001--004--MY3 and by the Russian Foundation for Basic Research Grant (project no. 21--54--52001) and MOST (105--2923--B--001--001--MY3). . - ISSN 2057-5858

РУБ Genetics & Heredity + Microbiology
Рубрики:
PHOTOTROPHIC BACTERIAL COMMUNITY
PURPLE SULFUR BACTERIUM
SP NOV.
Кл.слова (ненормированные):
flow cytometry -- Lake Shunet -- purple sulfur bacteria -- single-cell -- genomics
Аннотация: Meromictic lakes usually harbour certain prevailing anoxygenic phototrophic bacteria in their anoxic zone, such as the purple sulfur bacterium (PSB) Thiocapsa sp. LSW (hereafter LSW) in Lake Shunet, Siberia. PSBs have been suggested to play a vital role in carbon, nitrogen and sulfur cycling at the oxic-anoxic interface of stratified lakes; however, the ecological significance of PSBs in the lake remains poorly understood. In this study, we explored the potential ecological role of LSW using a deepsequencing analysis of single- cell genomics associated with flow cytometry. An approximately 2.7 Mb draft genome was obtained based on the co- assembly of five single- cell genomes. LSW might grow photolithoautotrophically and could play putative roles not only as a carbon fixer and diazotroph, but also as a sulfate reducer/oxidizer in the lake. This study provides insights into the potential ecological role of Thiocapsa sp. in meromictic lakes.

WOS
Держатели документа:
Natl Pingtung Univ Sci & Technol, Dept Forestry, Pingtung 91201, Taiwan.
Acad Sinica, Biodivers Res Ctr, Taipei 115, Taiwan.
Russian Acad Sci, Inst Biophys, Siberian Div, Krasnoyarsk, Russia.
Siberian Fed Univ, Krasnoyarsk, Russia.

Доп.точки доступа:
Wu, Yu-Ting; Chiang, Pei-Wen; Tandon, Kshitij; Rogozin, Denis Yu; Degermendzhy, Andrey G.; Tang, Sen-Lin; Ministry of Science and Technology in Taiwan through the Taiwan-Russia Joint Project [NSC102-2923-B-001-004-MY3]; Russian Foundation for Basic Research GrantRussian Foundation for Basic Research (RFBR) [21-54-52001]; MOST [105-2923-B-001-001-MY3]

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12.

Life Cycle and Taxonomic Status of Senecella siberica Vyshkvartzeva 1994 (Copepoda, Calanoida) in Large Norilsk Lakes, Pyasina River Basin, Central Siberia / O. P. Dubovskaya // Biol. Bull. - 2021. - Vol. 48, Is. 8. - P1236-1239, DOI 10.1134/S1062359021080057. - Cited References:15. - This study was supported by a State Assignment within the framework of the Basic Research Program of the Russian Federation (topic no. 51.1.1) and a State Assignment of the Ministry of Science and Higher Education of the Russian Federation for Siberian Federal University (project no. FSRZ-2020-0006). . - ISSN 1062-3590. - ISSN 1608-3059

РУБ Biology
Рубрики:
LIMNOCALANUS-MACRURUS
HISTORIES
ABUNDANCE
Кл.слова (ненормированные):
Senecella siberica -- winter zooplankton -- life cycle -- Norilsk lakes -- Sobachye Lake
Аннотация: During the winter of 2018, total zooplankton samples were taken under ice with a plankton net in Sobachye Lake, one of the large Norilsk lakes, in the western (April 13, May 6) and middle (May 6) parts at 70, 80, and 100 m depths. The previous assumption that Senecella in the large Norilsk lakes is reproduced in winter and is a univoltine species with a long (one-year) generation development time has been confirmed. The assignment of adult individuals to the species Senecella siberica Vyshkvartzeva 1994 has also been confirmed.

WOS
Держатели документа:
Russian Acad Sci, Fed Res Ctr, Inst Biophys, Siberian Branch,Krasnoyarsk Sci Ctr, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Krasnoyarsk 660041, Russia.

Доп.точки доступа:
Dubovskaya, O. P.; Basic Research Program of the Russian Federation [51.1.1]; Ministry of Science and Higher Education of the Russian Federation [FSRZ-2020-0006]

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13.

Winter atmospheric nutrient and pollutant deposition on Western Sayan Mountain lakes (Siberia) / D. Diaz-De-Quijano, A. Vladimirovich Ageev, E. Anatolevna Ivanova, O. Valerevna Anishchenko // Biogeosciences. - 2021. - Vol. 18, Is. 5. - P1601-1618, DOI 10.5194/bg-18-1601-2021 . - ISSN 1726-4170
Аннотация: The world map of anthropogenic atmospheric nitrogen deposition and its effects on natural ecosystems is not described with equal precision everywhere. In this paper, we report atmospheric nutrient, sulfate and spheroidal carbonaceous particle (SCP) deposition rates, based on snowpack analyses of a formerly unexplored Siberian mountain region. Then, we discuss their potential effects on lake phytoplankton biomass limitation. We estimate that the nutrient depositions observed in the late-season snowpack (4016 mgNO3-Nm2 and 0.580.13 mg TP-Pm2; TP for total phosphorous) would correspond to yearly depositions lower than 11971 mgNO3-Nm2 yr1 and higher than 1.710.91 mg TP-Pm2 yr1. These yearly deposition estimates would approximately fit the predictions of global deposition models and correspond to the very low nutrient deposition range, although they are still higher than world background values. In spite of the fact that such a low atmospheric nitrogen deposition rate would be enough to induce nitrogen limitation in unproductive mountain lakes, phosphorus deposition was also extremely low, and the resulting lake water N: P ratio was unaffected by atmospheric nutrient deposition. In the end, the studied lakes' phytoplankton appeared to be split between phosphorus and nitrogen limitation. We conclude that these pristine lakes are fragile sensitive systems exposed to the predicted climate warming, increased winter precipitation, enhanced forest fires and shifts in anthropogenic nitrogen emissions that could finally couple their water chemistry to that of atmospheric nutrient deposition and unlock temperature-inhibited responses of phytoplankton to nutrient shifts. © Author(s) 2021. This work is distributed under the Creative Commons Attribution 4.0 License.

Scopus
Держатели документа:
Siberian Federal University, 79, Svobondyi prospekt, Krasnoyarsk, Krasnoyarsk Krai, 660041, Russian Federation
Institute of Biophysics, Siberian Branch Russian Academy of Sciences, 50/50, Akademgorodok, Krasnoyarsk, Krasnoyarsk Krai, 660036, Russian Federation

Доп.точки доступа:
Diaz-De-Quijano, D.; Vladimirovich Ageev, A.; Anatolevna Ivanova, E.; Valerevna Anishchenko, O.

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14.

Pine Stands as Bioindicators: Justification for Air Toxicity Monitoring in an Industrial Metropolis / G. Polyakova, N. Pashenova, V. Senashova [et al.] // Environments. - 2020. - Vol. 7, Is. 4. - Ст. 28, DOI 10.3390/environments7040028. - Cited References:35. - This work was supported by the state budget allocated to the fundamental research at the Russian Academy of Sciences, projects 0356-2018-0742 and 0356-2017-0017, and by RFBR grant 15-04-06575, RFBR-Krasnoyarsk Regional Foundation N 18-44-240004, grant 18-44-242002. . - ISSN 2076-3298

РУБ Environmental Sciences
Рубрики:
HORMESIS
Кл.слова (ненормированные):
environmental monitoring -- pollutants -- toxicity -- creeping fire -- high-grade pine stands -- bioindicators
Аннотация: Five permanent sample plots (SPs; 200-250 trees per plot) were established in middle-aged high-grade suburban pine stands near the industrial city of Krasnoyarsk, Siberia, Russia. Needle damage, inventory parameters of the stands, and the defense response of the stem phloem were evaluated annually for the years 2002-2019 and attributed to acute or chronic toxic exposures (creeping fire or industrial pollutants, respectively). The results form a basis for using trees as bioindicators. A newly elaborated stem lesion test was formed from a hypothesis on the upward sugar transport for the regeneration of an injured crown, based on Eschrich's model of bidirectional sugar transport in the phloem. The formation of a phloem lesion was induced by inoculation of the stem with a mycelial extract of the ophiostomatoid fungus Ceratocystis laricicola. The lesion length and its shift relative to the inoculation hole were measured. An increase in the length of needles at early stages of stand weakening by pollutants was found to correspond to the hormesis model (Selye's adaptation syndrome). A possibility of assessing the chronology of pollutant toxicity and the duration of the recovery period after creeping fire was shown.

WOS
Держатели документа:
FRC KSC SB RAS, Sukachev Inst Forest SB RAS, Krasnoyarsk 660036, Russia.
Nonstate Educ Inst Higher Profess Educ Siberian I, Krasnoyarsk 660069, Russia.
FRC KSC SB RAS, Photobiol Lab, Inst Biophys SB RAS, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Biophys Dept, Krasnoyarsk 660049, Russia.

Доп.точки доступа:
Polyakova, Galina; Pashenova, Natalia; Senashova, Vera; Podolyak, Natalia; Kudryasheva, Nadezhda; Russian Academy of SciencesRussian Academy of Sciences [0356-2018-0742, 0356-2017-0017]; RFBRRussian Foundation for Basic Research (RFBR) [15-04-06575]; RFBR-Krasnoyarsk Regional Foundation [18-44-240004, 18-44-242002]

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15.

The benefit-risk analysis of omega-3 polyunsaturated fatty acids and heavy metals in seven smoked fish species from Siberia / M. I. Gladyshev, O. V. Anishchenko, O. N. Makhutova [et al.] // J. Food Compos. Anal. - 2020. - Vol. 90: 12th International Food Data Conference (IFDC) (OCT 11-13, 2017, Buenos Aires, ARGENTINA). - Ст. 103489, DOI 10.1016/j.jfca.2020.103489. - Cited References:66. - The work was supported by the Russian Science Foundation grant (No. 16-14-10001). . - ISSN 0889-1575. - ISSN 1096-0481

РУБ Chemistry, Applied + Food Science & Technology
Рубрики:
FRESH-WATER
   COMMERCIAL FISH
   MUSCLE-TISSUE
   COREGONUS
   MERCURY
Кл.слова (ненормированные):
Eicosapentaenoic acid -- Docosahexaenoic acid -- Coregonus -- Hazard -- quotients -- Lead -- GenBank
Аннотация: In cold smoked species of genus Coregonus, identified by molecular genetic analysis, contents of fatty acids and heavy metals and arsenic were measured. The highest content of sum of long-chain polyunsaturated fatty acids of omega-3 family (LC-PUFA), namely eicosapentaenoic (EPA) and docosahexaenoic (DHA) fatty acids, 6.53 +/- 0.78 mg g(-1) wet weight, was characteristic of tugun Coregonus tugun. This is the first quantitative estimation (mg LC-PUFA per g of product) of the nutritive value of smoked fish. Thus, to obtain a daily personal doze of EPA + DHA of 1 g, recommended for prevention of cardiovascular diseases, one needs to consume 153 g of the smoked tugun. Metals contents did not exceed standards for fish meat except Pb in least cisco Coregonus sardinella. Accordingly, values of hazard quotients, which estimate benefit-risk ratio of fish intake, indicate that most of the smoked fish species are safe product for human nutrition, except least cisco regarding Pb content.

WOS
Держатели документа:
Russian Acad Sci, Siberian Branch, Inst Biophys, Akademgorodok 50-50, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Svobodny Av 79, Krasnoyarsk 660041, Russia.
Fed Reg Ctr Standardizat Metrol & Testing Krasnoy, 1a Vavilov Str, Krasnoyarsk 660093, Russia.

Доп.точки доступа:
Gladyshev, Michail I.; Anishchenko, Olesia V.; Makhutova, Olesia N.; Kolmakova, Olesia V.; Trusova, Maria Y.; Morgun, Vasiliy N.; Gribovskaya, Iliada V.; Sushchik, Nadezhda N.; Russian Science FoundationRussian Science Foundation (RSF) [16-14-10001]

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16.

The benefit-risk analysis of omega-3 polyunsaturated fatty acids and heavy metals in seven smoked fish species from Siberia / M. I. Gladyshev, O. V. Anishchenko, O. N. Makhutova [et al.] // J. Food Compos. Anal. - 2020. - Vol. 90. - Ст. 103489, DOI 10.1016/j.jfca.2020.103489 . - ISSN 0889-1575
Кл.слова (ненормированные):
Coregonus -- Docosahexaenoic acid -- Eicosapentaenoic acid -- GenBank -- Hazard quotients -- Lead
Аннотация: In cold smoked species of genus Coregonus, identified by molecular genetic analysis, contents of fatty acids and heavy metals and arsenic were measured. The highest content of sum of long-chain polyunsaturated fatty acids of omega-3 family (LC-PUFA), namely eicosapentaenoic (EPA) and docosahexaenoic (DHA) fatty acids, 6.53 ± 0.78 mg g?1 wet weight, was characteristic of tugun Coregonus tugun. This is the first quantitative estimation (mg LC-PUFA per g of product) of the nutritive value of smoked fish. Thus, to obtain a daily personal doze of EPA + DHA of 1 g, recommended for prevention of cardiovascular diseases, one needs to consume 153 g of the smoked tugun. Metals contents did not exceed standards for fish meat except Pb in least cisco Coregonus sardinella. Accordingly, values of hazard quotients, which estimate benefit-risk ratio of fish intake, indicate that most of the smoked fish species are safe product for human nutrition, except least cisco regarding Pb content. © 2020 Elsevier Inc.

Scopus
Держатели документа:
Institute of Biophysics of Siberian Branch of Russian Academy of Sciences, Akademgorodok, 50/50, Krasnoyarsk, 660036, Russian Federation
Siberian Federal University, Svobodny av. 79, Krasnoyarsk, 660041, Russian Federation
Federal Regional Center for Standardization, Metrology and Testing in the Krasnoyarsk Region, 1a Vavilov Str., Krasnoyarsk, 660093, Russian Federation

Доп.точки доступа:
Gladyshev, M. I.; Anishchenko, O. V.; Makhutova, O. N.; Kolmakova, O. V.; Trusova, M. Y.; Morgun, V. N.; Gribovskaya, I. V.; Sushchik, N. N.

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17.

USE OF SPECTRAL SURFACE CHARACTERISTICS FOR MAPPING SOIL COVER STRUCTURE UNDER KRASNOYARSK FOREST-STEPPE CONDITIONS / V. Latysheva, T. Demyanenko, I. Botvich [et al.] ; ed.: GMT Gennady [et al.] // REGIONAL PROBLEMS OF EARTH REMOTE SENSING (RPERS 2020) : E D P SCIENCES, 2020. - Vol. 223: Conference on Regional Problems of Earth Remote Sensing (RPERS) (SEP 29-OCT 02, 2020, Krasnoyarsk, RUSSIA). - Ст. 03003. - (E3S Web of Conferences), DOI 10.1051/e3sconf/202022303003. - Cited References:6 . -

РУБ Environmental Sciences + Geosciences, Multidisciplinary + Remote Sensing

Аннотация: The relations between the spectral surface characteristics of the elements of the soil cover structure and soil properties in the Krasnoyarsk forest-steppe of Central Siberia were investigated. It was revealed that the most informative parameters for field spectrometry are the content of humus, carbonate carbon dioxide and the prevailing particle-size fractions. A statistically significant relationship between the elements of the soil cover structure and the reflectivity of soils has been confirmed by means of multidimensional statistics. The wave lengths with the greatest coupling force are highlighted. Regression equations for remote study of soil cover structure have been obtained, which can be used if additional point studies are carried out in a wider range of test parameters. Keywords: soil cover structure, spectral brightness coefficient, humus, particle-size distribution, multiple regression.

WOS
Держатели документа:
Fed State Budget Educ Inst Higher Educ Krasnoyars, 90 Mira Ave, Krasnoyarsk 660049, Russia.
SB RAS, Inst Biophys, Krasnoyarsk 660036, Russia.

Доп.точки доступа:
Latysheva, Valentina; Demyanenko, Tatyana; Botvich, Irina; Emelyanov, Dmitriy; Khizhnyak, Sergey; Gennady, GMT \ed.\; Noskov, M.V. \ed.\; Maglinets, Y.A. \ed.\

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18.

Effect of soil salinization on the productivity of pasture in the arid land / N. A. Kononova, T. I. Pisman, A. P. Shevyrnogov // IOP Conf. Ser. Earth Envir. Sci. : IOP PUBLISHING LTD, 2020. - Vol. 548: 3rd International Conference on Agribusiness, Environmental Engineering (JUN 18-20, 2020, Krasnoyarsk, RUSSIA). - Ст. 072063. - (IOP Conference Series-Earth and Environmental Science), DOI 10.1088/1755-1315/548/7/072063. - Cited References:15 . -

РУБ Agricultural Engineering + Agriculture, Multidisciplinary + Ecology
Рубрики:
PLANT
MARSH
Аннотация: This study compares the field data of the seasonal dynamics of halophytic plant productivity as dependent upon soil salinity level and soil type. The field study was carried out in the coastal area of Lake Kurinka (the Republic of Khakasia, south of Middle Siberia) between May and September of 2014 and 2016. Two plant communities with different soil salinity levels were studied. Results of the field investigation show that there is a correlation between plant growth and the soil salinity level. With high-salinity (3.72%) soils, the productivity of halophyte plants is lower than productivity with low-salinity (0.175%) soils.

WOS
Держатели документа:
Russian Acad Sci, Inst Biophys, Siberian Branch, 50-50 Akademgorodok, Krasnoyarsk 660036, Russia.

Доп.точки доступа:
Kononova, N. A.; Pisman, T., I; Shevyrnogov, A. P.; Kononova, Natalia

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19.

Advances in the use of molecular tools in ecological and biodiversity assessment of aquatic ecosystems / M. J. Feio, A. F. Filipe, A. Garcia-Raventos [et al.] // Limnetica. - 2020. - Vol. 39: 19th Congress of the Iberian-Association-of-Limnology (AIL) (JUN 24-29, 2018, Coimbra, PORTUGAL), Is. 1. - P419-440, DOI 10.23818/limn.39.27. - Cited References:92. - We are grateful to all participants of the special session "The use of molecular tools in ecological and biodiversity assessment of aquatic ecosystems" for the productive discussions during the AIL 2018 meeting (XIX Iberian Association of Limnology meeting in Coimbra (Portugal, June 2018). M.J. Feio is supported by MARE strategic program (UID/MAR/04292/2013); SFP Almeida is supported by GeoBioTec strategic program UID/GEO/04035/2019. R. Cordeiro was supported by a Ph.D. Grant (M3.1.a/F/017/2011) from Fundo Regional da Ciencia e Tecnologia (FRCT); A.F. Filipe and A. Garcia-Raventos were supported by FRESHING Project "Next-generation biomonitoring: freshwater bioassessment and species conservation improved with metagenomics" funded by the Portuguese Foundation for Science and Technology (FCT) and COMPETE (PTDC/AAG-MAA/2261/2014 -POCI-01-0145-FEDER-356 016824); F.M.S. Martins was supported by a FCT PhD grant (SFRH/BD/104703/2014); A.R. Calapez was supported by a grant from the FCT-PhD programme FLUVIO (PD\BD\52510\2014); A.M. Pujante acknowledges the BIOWAT-KIT_E!11892 Eurostars project; Maria Fais and Sofia Duarte were supported, respectively, by a PhD (SFRH/BD/113547/2015) and a post-doc fellowship (SFRH/BPD/109842/2015), from FCT; and C. Murria acknowledges the Fundacio Aigues de Barcelona for funding his research. . - ISSN 0213-8409. - ISSN 1989-1806

РУБ Limnology + Marine & Freshwater Biology
Рубрики:
BARCODE REFERENCE LIBRARY
METABARCODING APPROACH
RAPID ASSESSMENT
Кл.слова (ненормированные):
eDNA -- metabarcoding -- conservation -- ecological quality -- species -- detection -- rivers -- lakes -- thermal springs -- estuaries -- lagoons
Аннотация: Conservation and sustainable management of aquatic ecosystems is a priority in environmental programs worldwide. However, these aims are highly dependent on the efficiency, accuracy and cost of existent methods for the detection of keystone species and monitoring of biological communities. Rapid advances in eDNA, barcoding and metabarcoding promoted by high-throughput sequencing technologies are generating millions of sequences in a fast way, with a promising cost reduction, and overcoming some difficulties of the traditional taxonomic approaches. This paper provides an updated broad perspective of the current developments in this dynamic field presented in the special session (SS) "The use of molecular tools in ecological and biodiversity assessment of aquatic ecosystems" of the XIX Congress of the Iberian Association of Limnology (AIL2018), held in Coimbra, Portugal. Developments presented are mainly focused on the Iberian Peninsula (Portugal and Spain, including Atlantic Macaronesian islands) but include studies in France, Germany, Finland, Russia (Siberia) and South America. The networks within which these researchers are involved are yet even broader, profiting from existing molecular facilities, and traditional taxonomic expertise, which can be viewed as a characteristic of this new research area. It was evident in the SS that the use of molecular tools is widespread, being used to study a diversity of aquatic systems, from rivers' headwaters to estuaries and coastal lagoons, and volcanic, mountain and frozen lakes to hot springs. The organisms targeted are likewise varied and include fish, macroinvertebrates, meiofauna, microalgae such as diatoms and dinoflagellates, other protists, fungi, and bacteria (cyanobacteria and other). Some studies address the whole biodiversity (i.e., all species present independently of the taxonomic group) from environmental samples of water, biofilms and preservative solution from field samples (e.g., ethanol from macroinvertebrate samples). Great advances were acknowledged in the special session, namely in the use of metabarcoding for detecting hidden biodiversity, juvenile stages, low-abundance species, non-indigenous species and toxicity potential, and ultimately for ecological monitoring of diatoms and invertebrates. Yet, several drawbacks were highlighted and need further work, which include: taxonomic gaps in the reference databases (including gaps at species level and on intraspecific variability) or absence of public databases (e.g. for meiofauna), still high sequencing costs, the need of a substantial bioinformatics effort, difficulties in establishing the amount of environmental sample necessary for a good DNA extraction and the need for testing different genetic markers to obtain accurate results.

WOS
Держатели документа:
Marine & Environm Sci Ctr MARE, Coimbra, Portugal.
Univ Coimbra, Fac Sci & Technol, Dept Life Sci, Coimbra, Portugal.
Univ Porto, CIBIO InBio, Ctr Invest Biodiversidade & Recursos Genet, Campus Vairdo,Vila Conde, Porto, Portugal.
Univ Lisbon, Inst Super Agron, Ctr Invest Biodiversidade & Recursos Genet, CIBIO InBio, Lisbon, Portugal.
Univ Oviedo, Dept Funct Biol, C Julian Claveria S-N, E-33006 Oviedo, Spain.
Univ Lisbon, Sch Agr, Linking Landscape Environm Agr & Food LEAF, Lisbon, Portugal.
Labs Tecnol Levante SL, Avda Benjamin Franklin 16, Valencia 46980, Spain.
Univ Aveiro, Dept Biol & GeoBioTec GeoBioSci, GeoTechnol & GeoEngn Res Ctr, Campus Santiago, P-3810193 Aveiro, Portugal.
Univ Barcelona, Grup Recerca Freshwater Ecol Hydrol & Management, Avinguda Diagonal 643, E-08028 Barcelona, Spain.
Univ Barcelona, Inst Recerca Biodiversitat IRBio, Dept Biol Evolut Ecol & Ciencies Ambientals, Fac Biol, Avinguda Diagonal 643, E-08028 Barcelona, Spain.
Siberian Fed Univ, Fac Biol & Biotechnol, Dept Aquat & Terr Ecosyst, Svobodnyy 79, Krasnoyarsk 660041, Russia.
Univ Porto, Dept Biol, Fac Ciencias, Porto, Portugal.
Univ Minho, Ctr Mol & Environm Biol CBMA, Dept Biol, Campus Gualtar, P-4710057 Braga, Portugal.
Univ Cantabria, Environm Hydraul Inst, C Isabel Torres 15, Santander 39011, Spain.
Univ Acores, InBIO Lab Associado, Ctr Invest Biodiversidade & Recursos Genet, CIBIO,Fac Ciencias & Tecnol, P-9501801 Ponta Delgada, Portugal.
Univ Savoie Mt Blanc, INRA, CARRTEL, 75 Av Corzent, F-74200 Thonon Les Bains, France.
Univ Oulu, Dept Ecol & Genet, Stream Ecol Res Grp, Oulu, Finland.
CSIC, Natl Museum Nat Sci, Spanish Natl Res Council, Calle Jose Gutierrez Abascal 2, E-28006 Madrid, Spain.
Allgenetics, Edificio CICA,Campus Elvilia S-N, E-15008 La Coruna, Spain.
FAUNATICA, Kutojantie 11, Espoo, Finland.
Res Inst Ecosyst Anal & Assessment, Kackertstr 10, D-52072 Aachen, Germany.
Russian Acad Sci BI SB RAN, Biophys Inst, Siberian Branch, 50 Akad Gorodok,Str 50, Krasnoyarsk 660036, Russia.
Univ Perpignan, EPHE UPVD CNRS, 52 Ave Paul Alduy, F-66860 Perpignan, France.
CRIOBE, Lab Excellence Corail, BP 1013, Moorea, French Polynesi, France.

Доп.точки доступа:
Feio, Maria Joao; Filipe, Ana Filipa; Garcia-Raventos, Aina; Ardura, Alba; Calapez, Ana Raquel; Pujante, Ana Maria; Mortagua, Andreia; Murria, Cesc; Diaz-de-Quijano, Daniel; Martins, Filipa M. S.; Duarte, Sofia; Bariain, Marta Sainz; Cordeiro, Rita; Rivera, Sinziana F.; Vaisanen, Leif O. S.; Fonseca, Amelia; Goncalves, Vitor; Garcia-Vazquez, Eva; Rodriguez, David Vieites; Ivanova, Elena A.; Costa, Filipe O.; Barquin, Jose; Rojo, Veronica; Vierna, Joaquin; Fais, Maria; Suarez, Marcos; Nieminen, Marko; Hammers-Wirtz, Monica; Kolmakova, Olesia, V; Trusova, Maria Y.; Beja, Pedro; Gonzalez, Raquel; Planes, Serge; Almeida, Salome F. P.; MARE strategic program [UID/MAR/04292/2013]; GeoBioTec strategic program [UID/GEO/04035/2019]; Fundo Regional da Ciencia e Tecnologia (FRCT) [M3.1.a/F/017/2011]; FRESHING Project "Next-generation biomonitoring: freshwater bioassessment and species conservation improved with metagenomics" - Portuguese Foundation for Science and Technology (FCT); COMPETE [PTDC/AAG-MAA/2261/2014 -POCI-01-0145-FEDER-356 016824]; FCTPortuguese Foundation for Science and Technology [SFRH/BD/104703/2014, SFRH/BD/113547/2015, SFRH/BPD/109842/2015]; FCT-PhD programme FLUVIO [PD\BD\52510\2014]; Eurostars project [BIOWAT-KIT_E!11892]; Fundacio Aigues de Barcelona

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20.

Methanolobus halotolerans sp. nov., isolated from the saline Lake Tus in Siberia / Y. Shen, S. C. Chen, M. C. Lai [et al.] // Int. J. Syst. Evol. Microbiol. - 2020. - Vol. 70, Is. 10. - P5586-5593, DOI 10.1099/ijsem.0.004453. - Cited References:38. - This work was supported by grants from the Ministry of Education, Taiwan, ROC under the ATU plan (to M.C.L.), by the thematic project funding of Taiwan-Russian Joint Project (NSC99-2923-B-001-001-MY3 and NSC102-2923-B-001-004 to S.L.T.), by the Ministry of Science and Technology (MOST103/104/105/106/107-3113-M-005-001 to M.C.L.), Taiwan and the Russian Foundation for Basic Research, Grant No. 14-04-01060-a (to D.Y.R. and A.G.D.). . - ISSN 1466-5026. - ISSN 1466-5034

РУБ Microbiology
Рубрики:
TAIWANENSIS SP NOV.
   METHYLOTROPHIC METHANOGEN
   SEDIMENTS
   ACCURATE
   DNA
Аннотация: A halotolerant, psychrotolerant and methylotrophic methanogen, strain SY-01(T), was isolated from the saline Lake Tus in Siberia. Cells of strain SY-01(T) were non-motile, cocci and 0.8-1.0 mu m in diameter. The only methanogenic substrate utilized by strain SY-01(T) was methanol. The temperature range of growth for strain SY-01(T) was from 4 to 40 degrees C and the optimal temperature for growth was 30 degrees C. The pH range of growth was from pH 7.2 to 9.0, with optimal growth at pH 8.0. The NaCl range of growth was 0-1.55 M with optimal growth at 0.51 M NaCl. The G+C content of the genome of strain SY-01(T) was 43.6 mol% as determined by genome sequencing. Phylogenetic analysis revealed that strain SY-01(T) was most closely related to Methanolobus zinderi SD1(T) (97.3% 16S rRNA gene sequence similarity), and had 95.5-97.2 % similarities to other Methanolobus species with valid names. Genome relatedness between strain SY-01(T) and DSM 21339(T) was computed using average nucleotide identity and digital DNA-DNA-hybridization, which yielded values of 79.7 and 21.7 %, respectively. Based on morphological, phenotypic, phylogenetic and genomic relatedness data presented here, it is evident that strain SY-01(T) represents a novel species of the genus Methanolobus, and the name Methanolobus halotolerans sp. nov. is proposed. The type strain is SY-01(T) (=BCRC AR10051(T)=NBRC 113166(T)=DSM 107642(T)).

WOS
Держатели документа:
Natl Chung Hsing Univ, Dept Life Sci, Taichung, Taiwan.
Sanming Univ, Sch Resources & Chem Engn, Sanming 365004, Fujian, Peoples R China.
Sanming Univ, Fujian Prov Key Lab Resources & Environm Monitori, Sanming 365004, Fujian, Peoples R China.
Natl Chung Hsing Univ, Agr Biotechnol Ctr, Taichung, Taiwan.
Acad Sinica, Biodivers Res Ctr, Taipei, Taiwan.
Russian Acad Sci, Inst Biophys, Siberian Branch, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Krasnoyarsk 660041, Russia.

Доп.точки доступа:
Shen, Y.a.; Chen, Sheng-Chung; Lai, Mei-Chin; Huang, Hsing-Hua; Chiu, Hsiu-Hui; Tang, Sen-Lin; Rogozin, Denis Yu; Degermendzhy, Andrey G.; Ministry of Education, Taiwan, ROC under the ATU planMinistry of Education, Taiwan; thematic project funding of Taiwan-Russian Joint Project [NSC99-2923-B-001-001-MY3, NSC102-2923-B-001-004]; Ministry of Science and Technology, TaiwanMinistry of Science and Technology, Taiwan [MOST103/104/105/106/107-3113-M-005-001]; Russian Foundation for Basic ResearchRussian Foundation for Basic Research (RFBR) [14-04-01060-a]

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