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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Pilla R. M., Mette E. M., Williamson C. E., Adamovich B. V., Adrian R., Anneville O., Balseiro E., Ban S., Chandra S., Colom-Montero W., Devlin S. P., Dix M. A., Dokulil M. T., Feldsine N. A., Feuchtmayr H., Fogarty N. K., Gaiser E. E., Girdner S. F., Gonzalez M. J., Hambright K. D., Hamilton D. P., Havens K., Hessen D. O., Hetzenauer H., Higgins S. N., Huttula T. H., Huuskonen H., Isles P. D.F., Joehnk K. D., Keller W. B., Klug J., Knoll L. B., Korhonen J., Korovchinsky N. M., Koster O., Kraemer B. M., Leavitt P. R., Leoni B., Lepori F., Lepskaya E. V., Lottig N. R., Luger M. S., Maberly S. C., MacIntyre S., McBride C., McIntyre P., Melles S. J., Modenutti B., Muller-Navarra D. C., Pacholski L., Paterson A. M., Pierson D. C., Pislegina H. V., Plisnier P. -D., Richardson D. C., Rimmer A., Rogora M., Rogozin D. Y., Rusak J. A., Rusanovskaya O. O., Sadro S., Salmaso N., Saros J. E., Sarvala J., Saulnier-Talbot E., Schindler D. E., Shimaraeva S. V., Silow E. A., Sitoki L. M., Sommaruga R., Straile D., Strock K. E., Swain H., Tallant J. M., Thiery W., Timofeyev M. A., Tolomeev A. P., Tominaga K., Vanni M. J., Verburg P., Vinebrooke R. D., Wanzenbock J., Weathers K., Weyhenmeyer G. A., Zadereev E. S., Zhukova T. V.
Заглавие : Global data set of long-term summertime vertical temperature profiles in 153 lakes
Место публикации : Sci. Data: Nature Research, 2021. - Vol. 8, Is. 1. - Ст.200. - ISSN 20524463 (ISSN), DOI 10.1038/s41597-021-00983-y
Аннотация: Climate change and other anthropogenic stressors have led to long-term changes in the thermal structure, including surface temperatures, deepwater temperatures, and vertical thermal gradients, in many lakes around the world. Though many studies highlight warming of surface water temperatures in lakes worldwide, less is known about long-term trends in full vertical thermal structure and deepwater temperatures, which have been changing less consistently in both direction and magnitude. Here, we present a globally-expansive data set of summertime in-situ vertical temperature profiles from 153 lakes, with one time series beginning as early as 1894. We also compiled lake geographic, morphometric, and water quality variables that can influence vertical thermal structure through a variety of potential mechanisms in these lakes. These long-term time series of vertical temperature profiles and corresponding lake characteristics serve as valuable data to help understand changes and drivers of lake thermal structure in a time of rapid global and ecological change. © 2021, The Author(s).
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Zhila N. O., Sapozhnikova K. Yu., Kiselev E. G., Vasiliev A. D., Nemtsev I. V., Shishatskaya E. I., Volova T. G.
Заглавие : Properties of degradable polyhydroxyalkanoates (Phas) synthesized by a new strain, cupriavidus necator ibp/sfu-1, from various carbon sources
Место публикации : Polym.: MDPI, 2021. - Vol. 13, Is. 18. - Ст.3142. - ISSN 20734360 (ISSN), DOI 10.3390/polym13183142
Аннотация: The bacterial strain isolated from soil was identified as Cupriavidus necator IBP/SFU-1 and investigated as a PHA producer. The strain was found to be able to grow and synthesize PHAs under autotrophic conditions and showed a broad organotrophic potential towards different carbon sources: sugars, glycerol, fatty acids, and plant oils. The highest cell concentrations (7–8 g/L) and PHA contents were produced from oleic acid (78%), fructose, glucose, and palm oil (over 80%). The type of the carbon source influenced the PHA chemical composition and properties: when grown on oleic acid, the strain synthesized the P(3HB-co-3HV) copolymer; on plant oils, the P(3HB-co-3HV-co-3HHx) terpolymer, and on the other substrates, the P(3HB) homopolymer. The type of the carbon source influenced molecular-weight properties of PHAs: P(3HB) synthesized under autotrophic growth conditions, from CO2, had the highest number-average (290 ± 15 kDa) and weight-average (850 ± 25 kDa) molecular weights and the lowest polydispersity (2.9 ± 0.2); polymers synthesized from organic carbon sources showed increased polydispersity and reduced molecular weight. The carbon source was not found to affect the degree of crystallinity and thermal properties of the PHAs. The type of the carbon source determined not only PHA composition and molecular weight but also surface microstructure and porosity of the polymer films. The new strain can be recommended as a promising P(3HB) producer from palm oil, oleic acid, and sugars (fructose and glucose) and as a producer of P(3HB-co-3HV) from oleic acid and P(3HB-co-3HV-co-3HHx) from palm oil. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Karpowicz, Maciej, Feniova, Irina, Gladyshev, Michail I., Ejsmont-Karabin, Jolanta, Gorniak, Andrzej, Sushchik, Nadezhda N., Anishchenko, Olesya V., Dzialowski, Andrew R.
Заглавие : Transfer efficiency of carbon, nutrients, and polyunsaturated fatty acids in planktonic food webs under different environmental conditions
Колич.характеристики :14 с
Коллективы : Polish National Science Centre [2016/21/B/NZ8/00434]; Federal Tasks for Institute of Biophysics SB RAS [51.1.1]; Federal Tasks for Siberian Federal University [FSRG-2020-0019]
Место публикации : Ecol. Evol.: WILEY, 2021. - Article in press. - ISSN 2045-7758, DOI 10.1002/ece3.7651
Примечания : Cited References:62. - This research was supported by the Polish National Science Centre (2016/21/B/NZ8/00434). The research was also supported by Federal Tasks for Institute of Biophysics SB RAS No. 51.1.1 and Federal Tasks for Siberian Federal University No. FSRG-2020-0019. The authors are thankful to Joanna Kozowska for her help in the collection of samples.
Предметные рубрики: PHOSPHORUS STOICHIOMETRY
LIGHT-INTENSITY
ZOOPLANKTON
TEMPERATURE
Аннотация: The trophic transfer efficiency (TTE) is an important indicator of ecosystem functioning. However, TTE data from freshwater food webs are ambiguous due to differences in time scales and methods. We investigated the transfer of essential substances (carbon, nutrients, and polyunsaturated fatty acids) through plankton communities in 30 Polish lakes with different trophic status in the middle of summer. The results of our study revealed that different essential substances were transferred from phytoplankton to zooplankton with varying efficiencies. The average TTE of C, N, P, and the sum of omega-3 PUFA were 6.55%, 9.82%, 15.82%, and 20.90%, respectively. Our results also show a large mismatch between the elemental and biochemical compositions of zooplankton and their food during the peak of the summer stagnation, which may further promote the accumulation of essential substances. There were also large differences in TTEs between trophic conditions, with the highest efficiencies in oligotrophic lakes and the lowest in dystrophic and eutrophic lakes. Therefore, our study indicates that disturbances like eutrophication and dystrophication similarly decrease the TTE of essential substances between phytoplankton and zooplankton in freshwater food webs.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Feniova I. Y., Sakharova E. G., Buseva Z. F., Gladyshev M. I., Sushchik N. N., Gorelysheva Z. I., Karpowicz M., Semenchenko V. P.
Заглавие : Efficiency of Transfer of Essential Substances from Phytoplankton to Planktonic Crustaceans in Mesotrophic Conditions
Место публикации : Inland Water Biol.: Pleiades journals, 2021. - Vol. 14, Is. 1. - С. 49-59. - ISSN 19950829 (ISSN), DOI 10.1134/S1995082920040033
Аннотация: Abstract: We assessed the efficiency of the transfer of essential substances (carbon, phosphorus, nitrogen, and fatty acids (FA), including polyunsaturated fatty acids (PUFAs)) from phytoplankton to planktonic crustaceans in experimental mesocosms in the presence and absence of fish. The experiments were conducted under mesotrophic conditions in 300 L mesocosms. We have found that transfer efficiencies from producers to consumers are different for different substances. In particular, FA, including PUFAs, are transferred less efficiently than carbon. In contrast, the efficiency of nutrient transfer, especially phosphorus, is higher than that of carbon. This evidences that zooplankton can accumulate nutrients, increasing their quality as a resource for higher trophic levels. Fish significantly reduced the efficiency of carbon transfer from phytoplankton to zooplankton per unit of water volume, but did not affect the transfer of substances per unit of biomass. Thus, the quality of zooplankton as a food resource for higher trophic levels did not decrease in the presence of fish, despite the decline in the efficiency of the transfer of the essential substances per unit of water volume under their influence. Since the efficiency of essential substances transfered from phytoplankton to zooplankton determines the functioning of the entire trophic web, we should seek ways to increase it. © 2021, Pleiades Publishing, Ltd.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Karpowicz M., Feniova I., Gladyshev M. I., Ejsmont-Karabin J., Gorniak A., Sushchik N. N., Anishchenko O. V., Dzialowski A. R.
Заглавие : Transfer efficiency of carbon, nutrients, and polyunsaturated fatty acids in planktonic food webs under different environmental conditions
Место публикации : Ecology and Evolution: John Wiley and Sons Ltd, 2021. - Article in press. - ISSN 20457758 (ISSN), DOI 10.1002/ece3.7651
Аннотация: The trophic transfer efficiency (TTE) is an important indicator of ecosystem functioning. However, TTE data from freshwater food webs are ambiguous due to differences in time scales and methods. We investigated the transfer of essential substances (carbon, nutrients, and polyunsaturated fatty acids) through plankton communities in 30 Polish lakes with different trophic status in the middle of summer. The results of our study revealed that different essential substances were transferred from phytoplankton to zooplankton with varying efficiencies. The average TTE of C, N, P, and the sum of ?-3 PUFA were 6.55%, 9.82%, 15.82%, and 20.90%, respectively. Our results also show a large mismatch between the elemental and biochemical compositions of zooplankton and their food during the peak of the summer stagnation, which may further promote the accumulation of essential substances. There were also large differences in TTEs between trophic conditions, with the highest efficiencies in oligotrophic lakes and the lowest in dystrophic and eutrophic lakes. Therefore, our study indicates that disturbances like eutrophication and dystrophication similarly decrease the TTE of essential substances between phytoplankton and zooplankton in freshwater food webs. © 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Artamonova V. S., Afanasyev S. A., Bardukov N. V., Golod V. M., Kokodiy S. V., Koulish A. V., Pashkov A. N., Pipoyan S. K., Reshetnikov S. I., Makhrov A. A.
Заглавие : The Center of Origin and Colonization Routes of Noble Salmons of the GenusSalmo(Salmonidae, Actinopterigii)
Колич.характеристики :7 с
Коллективы : Russian Science FoundationRussian Science Foundation (RSF) [16-14-10001]
Место публикации : Dokl. Biochem. Biophys.: MAIK NAUKA/INTERPERIODICA/SPRINGER, 2020. - Vol. 493, Is. 1. - С. 171-177. - ISSN 1607-6729, DOI 10.1134/S160767292004002X. - ISSN 1608-3091(eISSN)
Примечания : Cited References:14. - The work was supported by the Russian Science Foundation (project no. 16-14-10001).
Предметные рубрики: PHYLOGENY
Аннотация: Genetic diversity and colonization routes of noble salmons were studied using a partial nucleotide sequence of the mitochondrialCOIgene. The brown troutS. trutta,which is the most ancient species of the genus, was concluded to originate from the modern southeastern Pontic-Caspian area, which is currently inhabited by members of the subspeciesS. trutta oxianus. Migrating westward while the Paratethys was in existence (5-34 million years ago), species of the genus colonized ancient water bodies in the modern Mediterranean basin and formed many isolated populations that survived desiccation of the Mediterranean Sea (5-6 million years ago). The Strait of Gibraltar mediated brown trout migrations to Northern Europe; the subspeciesS. trutta truttabelongs to a relatively young phylogenetic lineage of the species. A separate brown trout lineage, currently classified as the subspeciesS. trutta labrax,formed most likely in the area of the modern Danube basin, which was a relatively separate part of the Paratethys and was sometimes isolated as the Pannonian Lake. A highly divergent phylogenetic lineage of Atlantic salmon (S. salar) haplotypes originates from a haplotype of the brown trout that inhabited the area of the modern Strait of Gibraltar.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Artamonova V. S., Afanasyev S. A., Bardukov N. V., Golod V. M., Kokodiy S. V., Koulish A. V., Pashkov A. N., Pipoyan S. K., Reshetnikov S. I., Makhrov A. A.
Заглавие : The Center of Origin and Colonization Routes of Noble Salmons of the Genus Salmo (Salmonidae, Actinopterigii)
Место публикации : Doklad. Biochem. Biophys.: Pleiades Publishing, 2020. - Vol. 493, Is. 1. - С. 171-177. - ISSN 16076729 (ISSN), DOI 10.1134/S160767292004002X
Аннотация: Abstract: Genetic diversity and colonization routes of noble salmons were studied using a partial nucleotide sequence of the mitochondrial COI gene. The brown trout S. trutta, which is the most ancient species of the genus, was concluded to originate from the modern southeastern Pontic-Caspian area, which is currently inhabited by members of the subspecies S. trutta oxianus. Migrating westward while the Paratethys was in existence (5–34 million years ago), species of the genus colonized ancient water bodies in the modern Mediterranean basin and formed many isolated populations that survived desiccation of the Mediterranean Sea (5–6 million years ago). The Strait of Gibraltar mediated brown trout migrations to Northern Europe; the subspecies S. trutta trutta belongs to a relatively young phylogenetic lineage of the species. A separate brown trout lineage, currently classified as the subspecies S. trutta labrax, formed most likely in the area of the modern Danube basin, which was a relatively separate part of the Paratethys and was sometimes isolated as the Pannonian Lake. A highly divergent phylogenetic lineage of Atlantic salmon (S. salar) haplotypes originates from a haplotype of the brown trout that inhabited the area of the modern Strait of Gibraltar. © 2020, Pleiades Publishing, Ltd.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Makhrov A. A., Artamonova V. S.
Заглавие : Instability Stabilized: Mechanisms of Evolutionary Stasis and Genetic Diversity Accumulation in Fishes and Lampreys from Environments with Unstable Abiotic Factors
Колич.характеристики :12 с
Коллективы : Russian Science FoundationRussian Science Foundation (RSF) [16-14-10001]
Место публикации : Contemp. Probl. Ecol.: MAIK NAUKA/INTERPERIODICA/SPRINGER, 2020. - Vol. 13, Is. 4. - С. 370-381. - ISSN 1995-4255, DOI 10.1134/S1995425520040083. - ISSN 1995-4263(eISSN)
Примечания : Cited References:141. - We are grateful to Yu.P. Altukhov, I.N. Bolotov, E.A. Borovikova, I.V. Vikhrev, Yu.Yu. Dgebuadze, E.Yu. Krysanov, K.V. Kuzishchin, B.M. Mednikov, M.V. Mina, V.M. Spitsyn, and V.S. Fridman for helpful discussions of the problems considered in the review. The work was supported by the Russian Science Foundation (project no. 16-14-10001).
Предметные рубрики: SEBASTES-MENTELLA EVIDENCE
MTDNA CONTROL REGION
POPULATION-STRUCTURE
Аннотация: As studies have shown, individuals from well morphologically distinct groups often represent the same species and may even belong to one population in fishes and lampreys from environments with unstable abiotic factors (Arctic, mountain, and desert regions). Phenotypic plasticity ensures broad variation ranges of morphological traits in unstable conditions, which require rapid transitions from one morphogenetic variant to another. The choice of a morphogenetic pathway can be influenced by the level of individual heterozygosity, changes in the copy numbers of certain DNA sequences, heteroplasmy, and the presence of several allelic variants in the genes that strongly affect the phenotype. A cyclic character is often observed for evolutionary processes driven by these mechanisms, and speciation usually does not take place in unstable environmental conditions. However, mobilization reserve accumulate in a species with a broad reaction norm, and particular morphogenetic pathways may be genetically fixed when its population finds its way into stable environmental conditions, facilitating fast allopatric speciation.
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Вид документа : Статья из сборника (выпуск монографической серии)
Шифр издания :
Автор(ы) : Bartsev S., Baturina P.
Заглавие : A heuristic neural network model in the research of properties of evolutionary trajectories
Колич.характеристики :7 с
Место публикации : INTERNATIONAL WORKSHOP ADVANCED TECHNOLOGIES IN MATERIAL SCIENCE,: IOP PUBLISHING LTD, 2019. - Vol. 537: International Workshop on Advanced Technologies in Material Science, (APR 04-06, 2019, Krasnoyarsk, RUSSIA). - Ст.042001. - (IOP Conference Series-Materials Science and Engineering). - , DOI 10.1088/1757-899X/537/4/042001
Примечания : Cited References:21
Предметные рубрики: SEQUENCE SPACE
Аннотация: There is considerable data on molecular evolution, but there remains no approach to systematizing them within the framework of the key problems of biology. To search for the most common properties of evolving systems, the heuristic method has been proposed. Artificial networks of formal neurons were chosen as the heuristic model object. The paper examines the divergent component of evolutionary trajectory formation. As a result of the simulation, the dependence of the potential variability parameter on the position of the fitness function landscape was obtained. The simulation results are in agreement with the real data of molecular evolution experiments.
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10.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Gozlan R. E., Karimov B. K., Zadereev E., Kuznetsova D., Sandra Brucet S S.
Заглавие : Status, trends, and future dynamics of freshwater ecosystems in Europe and Central Asia
Место публикации : Inland Waters: Taylor and Francis Ltd., 2019. - Article in press. - ISSN 20442041 (ISSN) , DOI 10.1080/20442041.2018.1510271
Ключевые слова (''Своб.индексиров.''): aquatic--biodiversity--conservation--habitat
Аннотация: This review is part of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) report on Europe and Central Asia (ECA) and provides a critical assessment of issues facing decision-makers, including freshwater biodiversity and ecosystem trends as well as drivers of change. Freshwater systems are well established as the most threatened ecosystem type in the ECA region, with the quantity and quality of habitats and abundance of many species rapidly declining. Only about half (53%) of the EU's rivers and lakes achieved good ecological status in 2015 (as defined by the Water Framework Directive in terms of the quality of the biological community), and many lakes, ponds, and streams are disappearing as a consequence of agricultural intensification and inefficient irrigation and urbanisation, combined with climate change. The situation regarding freshwater biodiversity remains highly critical in ECA as many species remain threatened with extinction, including 50% of known species for some groups (e.g., molluscs, amphibians). Drivers of ECA freshwater taxa include the destruction or modification of their habitat, including water abstraction, which affects ?89% of all amphibian threatened species and ?26% of threatened freshwater invertebrate species. Of particular concern is the lack of data for freshwater invertebrates. Current status is available for only a minority of species, and the impact of alien invasive species is often unknown, especially in Central Asia. Based on current freshwater biodiversity trends, it is highly unlikely that ECA will achieve either the respective Aichi biodiversity targets by 2020 (i.e., targets 2 to 4, 6 to 12, and 14) or Target 1 of the Biodiversity Strategy. © 2019, © 2019 International Society of Limnology (SIL).
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11.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Deeva, Anna A., Zykova, Evgenia A., Nemtseva, Elena V., Kratasyuk, Valentina A.
Заглавие : Functional divergence between evolutionary-related LuxG and Fre oxidoreductases of luminous bacteria
Колич.характеристики :7 с
Коллективы : Russian Foundation for Basic Research [18-44-243009]; Ministry of Education and Science of the Russian Federation [0356-2019-0019, 6.7734.2017]; Krasnoyarsk Region Science and Technology [18-44-243009]
Место публикации : Proteins: WILEY, 2019. - Vol. 87, Is. 9. - С. 723-729. - ISSN 0887-3585, DOI 10.1002/prot.25696. - ISSN 1097-0134(eISSN)
Примечания : Cited References:39. - The Russian Foundation for Basic Research and Krasnoyarsk Region Science and Technology Support Fund, Grant/Award Number: 18-44-243009; Ministry of Education and Science of the Russian Federation, Grant/Award Numbers: 0356-2019-0019, 6.7734.2017
Предметные рубрики: ESCHERICHIA-COLI
FLAVIN OXIDOREDUCTASE
CRYSTAL-STRUCTURE
Аннотация: In luminous bacteria NAD(P)H:flavin-oxidoreductases LuxG and Fre, there are homologous enzymes that could provide a luciferase with reduced flavin. Although Fre functions as a housekeeping enzyme, LuxG appears to be a source of reduced flavin for bioluminescence as it is transcribed together with luciferase. This study is aimed at providing the basic conception of Fre and LuxG evolution and revealing the peculiarities of the active site structure resulted from a functional variation within the oxidoreductase family. A phylogenetic analysis has demonstrated that Fre and LuxG oxidoreductases have evolved separately after the gene duplication event, and consequently, they have acquired changes in the conservation of functionally related sites. Namely, different evolutionary rates have been observed at the site responsible for specificity to flavin substrate (Arg 46). Also, Tyr 72 forming a part of a mobile loop involved in FAD binding has been found to be conserved among Fre in contrast to LuxG oxidoreductases. The conservation of different amino acid types in NAD(P)H binding site has been defined for Fre (arginine) and LuxG (proline) oxidoreductases.
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12.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Feniova I., Sakharova E., Karpowicz M., Gladyshev M. I., Sushchik N. N., Dawidowicz P., Gorelysheva Z., Gorniak A., Stroinov Y., Dzialowski A.
Заглавие : Direct and indirect impacts of fish on crustacean zooplankton in experimental mesocosms
Место публикации : Water: MDPI AG, 2019. - Vol. 11, Is. 10. - Ст.2090. - ISSN 20734441 (ISSN) , DOI 10.3390/w11102090
Аннотация: Understanding the factors that regulate phytoplankton and zooplankton is an important goal of aquatic ecologists; however, much remains unknown because of complex interactions between phytoplankton, zooplankton, and fish. Zooplankton, in particular cladocerans, can be regulated by bottom-up factors either via food quantity or food quality in terms of polyunsaturated fatty acids (PUFA) or phosphorus (P) contents in phytoplankton. Fish can recycle nutrients and in turn change the PUFA and P contents of algal resources, thus modifying bottom-up regulation. Furthermore, fish can change phytoplankton structure through consumption of cladocerans which selectively graze phytoplankton. We conducted a mesocosm (300 L) experiment to determine how trophic state and fish affected crustacean dynamics. The mesocosms were filled with water containing natural plankton from the eutrophic Lake Jorzec and mesotrophic Lake Majcz (Northeastern Poland), and we manipulated fish presence/absence. We also conducted a complementary life-table experiment to determine how trophic state and fish nonconsumptively affected demographic parameters of the dominant cladocerans in the mesocosms. Small and large cladoceran species responded differently to food quantity and quality. Small-bodied Ceriodaphnia were regulated mainly by resource concentrations (i.e., food quantity), while large species were limited by PUFAs (i.e., food quality). Fish likely increased food quality in terms of PUFA, primarily eicosapentaenoic acids (EPA), thus providing conditions for more successful development of Daphnia than in the fish-free treatments. Phosphorus in the seston was likely limiting for zooplankton. However, food quality in terms of phosphorus was likely less important than PUFA because zooplankton can accumulate nutrients in their body. © 2019 by the authors.
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13.

Вид документа : Статья из сборника (выпуск продолж. издания)
Шифр издания :
Автор(ы) : Bartsev S., Baturina P.
Заглавие : A heuristic neural network model in the research of properties of evolutionary trajectories
Место публикации : IOP Conference Series: Materials Science and Engineering: Institute of Physics Publishing, 2019. - Vol. 537: International Workshop on Advanced Technologies in Material Science, Mechanical and Automation Engineering - MIP: Engineering-2019 (4 April 2019 through 6 April 2019, ) Conference code: 149243, Is. 4. - , DOI 10.1088/1757-899X/537/4/042001
Аннотация: There is considerable data on molecular evolution, but there remains no approach to systematizing them within the framework of the key problems of biology. To search for the most common properties of evolving systems, the heuristic method has been proposed. Artificial networks of formal neurons were chosen as the heuristic model object. The paper examines the divergent component of evolutionary trajectory formation. As a result of the simulation, the dependence of the potential variability parameter on the position of the fitness function landscape was obtained. The simulation results are in agreement with the real data of molecular evolution experiments. © Published under licence by IOP Publishing Ltd.
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14.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Karpowicz M., Feniova I., Gladyshev M. I., Ejsmont-Karabin J., Gorniak A., Zielinski P., Dawidowicz P., Kolmakova A. A., Dzialowski A. R.
Заглавие : The stoichiometric ratios (C:N:P) in a pelagic food web under experimental conditions
Место публикации : Limnologica: Elsevier GmbH, 2019. - Vol. 77. - Ст.125690. - ISSN 00759511 (ISSN) , DOI 10.1016/j.limno.2019.125690
Аннотация: Interactions between phytoplankton and zooplankton affect the overall functioning of lakes. Herbivores are habitually confronted with food of inferior quality, usually a result of low nutrient concentrations in plant material. Large-bodied cladocerans are better competitors for food than small-bodied species but they are more vulnerable to low food quality. Understanding the effects of food quality on zooplankton structure and competition between small - large bodied herbivorous is of considerable interest. We want to find out how differences in C:N:P ratios between phytoplankton and zooplankton communities affect their abundances in a freshwater food web. We want also to assess the role of phytoplankton and zooplankton as sinks of the phosphorus and nitrogen. Therefore, we conducted a 31-day mesocosms experiment with water from a mesotrophic and a eutrophic lake (with natural plankton communities). To simulate changes in the plankton communities large-bodied Daphnia magna and Daphnia pulicaria were added. Samples for zooplankton, phytoplankton and water chemistry were taken every 10 days. Samples for elemental analysis (C:N:P) of seston and zooplankton were collected on the first, and on the final day of the experiment. Our mesocosms experiment showed mismatch in C:P between seston (high) and zooplankton (low), which suggests that most of the phosphorus is incorporated in zooplankton biomass. This evidenced that zooplankton is an effective sink of phosphorus, while nitrogen is accumulated mainly by primary producers. Our results also indicated more stability in stoichiometry with increasing trophic levels of organisms. However, there were significant changes in the zooplankton structure. The increasing dominance of large Daphnia resulted in reduction of C:P ratio in zooplankton. Low food quality (C:P) did not limit the growth of large Daphnia in the experimental conditions, which competed effectively with small planktonic cladocerans and with Rotifera. Over time, inedible algae began to dominate resulting in increase of relative biomass of periphyton grazers, which suggests that plankton community is transformed into littoral system in mesocosms for about 30 days. © 2019
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15.

Вид документа : Статья из сборника (однотомник)
Шифр издания : Е071/Б 63
Автор(ы) : Печуркин, Николай Савельевич, Шуваев А. Н., Сомова, Лидия Александровна, Толомеев А. П. Александр Павлович, Дегерменджи А. Г. Андрей Георгиевич, Бархатов Ю. В., Хромечек, Елена Борисовна, Дроботов А. В.
Заглавие : Непрерывный рост интенсивности энерго-вещественных взаимодействий в эволюции геобиосферы Земли
Параллельн. заглавия :Transparent growth of the energy/matter interactions on Earth in the evolution of geobiosphere
Коллективы : Российская академия наук, Институт биофизики
Место публикации : Биофизика для экологии и медицины: к 90-летию академика РАН И. И. Гительзона/ И. И. Гительзон, Т. Г. Волова, А. Г. Дегерменджи [и др.] ; ред., авт. предисл. Т. Г. Волова. - Новосибирск: Издательство Сибирского отделения Российской академии наук, 2019. - С. 248-254. - ISBN 978-5-7692-1650-3 (Шифр Е071/Б 63-478048446)
УДК : 577 + 574 + 61
ББК : Е071я43 + Р252.0я43
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16.

Вид документа : Однотомное издание
Шифр издания : Е071/Б 63
Автор(ы) : Гительзон, Иосиф Исаевич, Волова, Татьяна Григорьевна, Дегерменджи, Андрей Георгиевич, Дегерменджи Н. Н., Шевырногов, Анатолий Петрович, Кратасюк В. А., Барцев, Сергей иванович, Болсуновский, Александр Яковлевич, Бондарь, Владимир Антонович, Буров А. Е., Величко В. В., Гладышев, Михаил Иванович, Есимбекова Е. Н., Дементьев Д. В., Есимбекова Е. Н., Задереев, Егор Сергеевич, Зотина Т. А., Косиненко, Сергей Васильевич, Медведева С. Е., Петушков В. Н., Печуркин, Николай Савельевич, Прокопкин И. Г., Пузырь А. П., Пуртов К. В., Рогозин, Денис Юрьевич, Родионова Н. С., Ронжин Н. О., Сомова, Лидия Александровна, Тихомиров, Александр Аполлинариевич, Тихомирова, Наталья Александровна, Трифонов С. В., Ушакова, Софья Аврумовна, Франк Л. А., Хромечек Е. Б., Шишацкая Е. И., Шуваев А. Н.
Заглавие : Биофизика для экологии и медицины: к 90-летию академика РАН И. И. Гительзона
Выходные данные : Новосибирск: Издательство Сибирского отделения Российской академии наук, 2019
Колич.характеристики :292, [2] с.: ил., цв. ил.; 25 см.
Коллективы : Российская академия наук. Сибирское отделение, Институт биофизики (Красноярск)
Примечания : Рез. ст. англ. - Библиогр. в конце ст.
ISBN, Цена 978-5-7692-1650-3: 1635.00 р.
ГРНТИ : 31.27 + 76.03
УДК : 577 + 574 + 61
ББК : Е071я43 + Р252.0я43
Предметные рубрики: Экологическая биофизика
Медицинская биофизика
Ключевые слова (''Своб.индексиров.''): биолюминесценция--люцифераза--целентаразин--олигохеты--замкнутые экосистемы--управляемый биосинтез--наноалмазы--радиоизотопные методы--биосфера--жирные кислоты--системы жизнеобеспечения--меромиктические озера--геобиосфера--эволюция--глобальный климат--медицинская биофизика
Содержание : Краткий очерк истории, состояния и перспектив/ И. И. Гительзон. Коллекция культур ибсо как база для исследований биолюминесценции й и грибов в ИБФ СО РАН/ С. Е. Медведева. Биолюминесценция Мирового океана/ И. И. Гительзон, Л. А. Левин, А. С. Артемкин, Р. Н., Чепилов В. В., Молвинских С.Л., Черепанов О. А., Чугунов Ю. В., Караев Н. Д., Загородний Ю. А., Шевырногов А. П. Утюшев Р. Н. Бактериальная люцифераза в биолюминесцентном анализе/ В. А. Кратасюк, Е. Н. Есимбекова. Целентеразин-зависимые биолюминесцентные системы/ Л. А. Франк. Изучение химического механизма биолюминесценции грибов/ К. В. Пуртов, В. Н. Петушков, Н. С. Родионова. Исследование биолюминесценции сибирских почвенных олигохет/ Н. С. Родионова, А. А. Петушков. Экспериментальные модели замкнутых экосистем с расчетной долей человека как перспективное направление исследований по созданию биолого-технической системы жизнеобеспечения/ А. А. Тихомиров, С. А. Ушакова, Н. А. Тихомирова, С. В., Величко В. В. Трифонов С. В. Управляемый биосинтез: от параметрически управляемых продуцирующих биосистем до новейших биофизических технологий/ Т. Г. Волова, Е. И. Шишацкая. Биомедицинские приложения наноалмазов взрывного синтеза/ В. С. Бондарь, А. П. Пузырь, Н. О. Ронжин, А. В., Буров А. Е. Барон А. В. Применение радиоизотопных методов в институте биофизики СО РАН: от клеток крови до экосистем/ А. Я. Болсуновский, С. В. Косиненко, Т. А. Зотина, Д. В. Дементьев. Биосфера - взгляд сверху (экспрессные методы мониторинга биосферы в ИБФ СО РАН – ХХ–ХХI вв.)/ А. П. Шевырногов. Жирные кислоты в экологической биофизике водных систем/ М. И. Гладышев. Сравнительное исследование устойчивости стратификации и структуры трофической сети в меромиктических озерах Шира и Шунет (Южная Сибирь, Россия)/ Д. Ю. Рогозин, Е. С. Задереев, И. Г. Прокопкин [и др.]. Непрерывный рост интенсивности энерго-вещественных взаимодействий в эволюции геобиосферы Земли/ Н. С. Печуркин, А. Н. Шуваев, Л. А. Сомова. Малоразмерные модели биосферы и феноменология изменения глобального климата/ С. И. Барцев, А. Г. Дегерменджи. Направления развития биофизики в Красноярске/ А. Г. Дегерменджи.
Аннотация: Сборник посвящен широкому кругу исследований в области экологической биофизики – научного направления на стыке наук – от исследований на молекулярном уровне до вопросов управления большими природными экосистемами. Рассмотрены исторические вехи развития экологического направления биофизики. Основной акцент сборника основан на современных, актуальных достижениях красноярских биофизиков, которым удалось сохранить и развить многоплановые направления, которые были заложены в 50-х гг. ХХ века И. И. Гительзоном. Наряду с обзорными материалами и результатами фундаментальных исследований представлен ряд готовых к внедрению биотехнологий. Книга адресована биофизикам, экологам и химикам, а также преподавателям и студентам биофизических, биологических и экологических кафедр университетов.
Экземпляры :ИБФ-КФ(1)
Свободны : ИБФ-КФ(1)
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17.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Borovikova, Elena A., Artamonova, Valentina S.
Заглавие : Morphological specificities of vendace (Salmoniformes: Salmonidae: Coregoninae: Coregonus albula) population in Lake Pleshcheyevo (the Volga River basin): relationships of two phylogenetic lineages in a new zone of secondary contact
Колич.характеристики :12 с
Коллективы : Russian Science Foundation [16-14-10001]
Место публикации : Org. Divers. Evol.: SPRINGER HEIDELBERG, 2018. - Vol. 18, Is. 3. - С. 355-366. - ISSN 1439-6092, DOI 10.1007/s13127-018-0375-5. - ISSN 1618-1077(eISSN)
Примечания : Cited References:46. - The preparation of this manuscript was supported by the Russian Science Foundation, grant no. 16-14-10001.
Предметные рубрики: ECOLOGICAL DIVERGENCE
SPECIES PAIR
ORIGIN
EVOLUTIONARY
WHITEFISH
Ключевые слова (''Своб.индексиров.''): vendace--morphological characters--allopatric origin--phylogenetic--lineages--lake pleshcheyevo
Аннотация: This is the report about the secondary contact zone of coregonids in the Upper Volga basin. Two mitochondrial DNA (mtDNA) phylogenetic lineages of vendace Coregonus albula (Linnaeus, 1758) living in Lake Pleshcheyevo have been analyzed and compared in terms of morphological characters. These lineages have developed under the conditions of allopatry and are characterized by strong differences of the mitochondrial DNA sequences. The lineages have coexisted in the same lake since the last glaciation maximum (about 10,000years ago). The morphological analysis has shown that representatives of both lineages correspond to C. albula, while slight, morphological variations between lineages indicate different food preferences and locomotor abilities. Scenarios where multiple distinct coexisting phylogenetic lineages are characterized by low levels of morpho-ecological divergence are uncommon. These situations are important for understanding biodiversity dynamics and the mechanisms that drive coexistence, adaptive divergence, hybridization, and extinction when genetically divergent lineages meet in secondary contact.
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18.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Kotlobay A. A., Sarkisyan K. S., Mokrushina Y. A., Marcet-Houben M., Serebrovskaya E. O., Markina N. M., Somermeyer L. G., Gorokhovatsky A. Y., Vvedensky A., Purtov K. V., Petushkov V. N., Rodionova N. S., Chepurnyh T. V., Fakhranurova L. I., Guglya E. B., Ziganshin R., Tsarkova A. S., Kaskova Z. M., Shender V., Abakumov M., Abakumova T. O., Povolotskaya I. S., Eroshkin F. M., Zaraisky A. G., Mishin A. S., Dolgov S. V., Mitiouchkina T. Y., Kopantzev E. P., Waldenmaier H. E., Oliveira A. G., Oba Y., Barsova E., Bogdanova E. A., Gabaldon T., Stevani C. V., Lukyanov S., Smirnov I. V., Gitelson J. I., Kondrashov F. A., Yampolsky I. V.
Заглавие : Genetically encodable bioluminescent system from fungi
Место публикации : Proc. Natl. Acad. Sci. U. S. A.: National Academy of Sciences, 2018. - Vol. 115, Is. 50. - С. 12728-12732. - ISSN 00278424 (ISSN) , DOI 10.1073/pnas.1803615115
Ключевые слова (''Своб.индексиров.''): bioluminescence--fungal luciferase--fungal luciferin biosynthesis
Аннотация: Bioluminescence is found across the entire tree of life, conferring a spectacular set of visually oriented functions from attracting mates to scaring off predators. Half a dozen different luciferins, molecules that emit light when enzymatically oxidized, are known. However, just one biochemical pathway for luciferin biosynthesis has been described in full, which is found only in bacteria. Here, we report identification of the fungal luciferase and three other key enzymes that together form the biosynthetic cycle of the fungal luciferin from caffeic acid, a simple and widespread metabolite. Introduction of the identified genes into the genome of the yeast Pichia pastoris along with caffeic acid biosynthesis genes resulted in a strain that is autoluminescent in standard media. We analyzed evolution of the enzymes of the luciferin biosynthesis cycle and found that fungal bioluminescence emerged through a series of events that included two independent gene duplications. The retention of the duplicated enzymes of the luciferin pathway in nonluminescent fungi shows that the gene duplication was followed by functional sequence divergence of enzymes of at least one gene in the biosynthetic pathway and suggests that the evolution of fungal bioluminescence proceeded through several closely related stepping stone nonluminescent biochemical reactions with adaptive roles. The availability of a complete eukaryotic luciferin biosynthesis pathway provides several applications in biomedicine and bioengineering. © 2018 National Academy of Sciences. All Rights Reserved.
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19.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Feniova I., Dawidowicz P., Ejsmont-Karabin J., Gladyshev M., Kalinowska K., Karpowicz M., Kostrzewska-Szlakowska I., Majsak N., Petrosyan V., Razlutskij V., Rzepecki M., Sushchik N., Dzialowski A. R.
Заглавие : Effects of zebra mussels on cladoceran communities under eutrophic conditions
Место публикации : Hydrobiologia: Springer International Publishing, 2018. - С. 1-18. - ISSN 00188158 (ISSN) , DOI 10.1007/s10750-018-3699-4
Ключевые слова (''Своб.индексиров.''): chlorophyll--food quality--life-table experiments--phosphorus limitation--zooplankton
Аннотация: The purpose of this study was to determine how zebra mussels affected cladoceran community structure under eutrophic conditions. We conducted a mesocosm study where we manipulated the presence of zebra mussels and the presence of large-bodied Daphnia (Daphnia magna and Daphnia pulicaria). We also conducted a complimentary life-table experiment to determine how water from the zebra mussel treatment affected the life history characteristics of the cladoceran species. We anticipated that small- and large-bodied cladoceran species would respond differently to changes in algal quality and quantity under the effects of zebra mussels. Large-bodied Daphnia successfully established in the zebra mussel treatment but failed to grow in the control. We did not observe positive relationships between food concentrations and cladoceran abundances. However, the phosphorus content in the seston indicated that food quality was below the threshold level for large-bodied cladocerans at the beginning of the experiment. We believe that zebra mussels quickly enhanced the phosphorus content in the seston due to the excretion of inorganic phosphorus, thus facilitating the development of large-bodied Daphnia. In conclusion, our results suggest that zebra mussels can alter the phosphorus content of seston in lakes and this can affect the dynamics of crustacean zooplankton. © 2018 Springer International Publishing AG, part of Springer Nature
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20.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Makhrov A. A., Lajus D. L.
Заглавие : Postglacial Colonization of the North European Seas by Pacific Fishes and Lamprey
Колич.характеристики :12 с
Коллективы : Russian Science Foundation [16-14-10001]
Место публикации : Contemp. Probl. Ecol.: MAIK NAUKA/INTERPERIODICA/SPRINGER, 2018. - Vol. 11, Is. 3. - С. 247-258. - ISSN 1995-4255, DOI 10.1134/S1995425518030071. - ISSN 1995-4263(eISSN)
Примечания : Cited References:134. - This work was supported by Russian Science Foundation, project no. 16-14-10001.
Предметные рубрики: MULTIPLE GLACIAL REFUGIA
GENETIC DIFFERENTIATION
SPECIES COMPLEX
1956
Ключевые слова (''Своб.индексиров.''): arctic ocean--zoogeography--phylogeography--fish--lamprey--evolution--immobilization
Аннотация: A critical analysis of literature data on the distribution, morphology, and phylogeography of the Arctic lamprey (Lethenteron camtschaticum) and five species of marine and anadromous fish such as navaga (Eleginus navaga), pollock (Theragra chalcogramma), rainbow smelt (Osmerus mordax dentex), Pacific herring (Clupea pallasii), and pond smelt (Hypomesus olidus) has been performed. The results show that all these species have colonized Northern European seas, distributing along the Arctic coastline of Eurasia after the glacier retreat. The reasons that the dispersal of these species in the Atlantic Ocean may be impeded (preference for a cold environment, competition, and decrease of the evolutionary potential) are discussed.
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