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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Kolmakova O.V., Gladyshev M.I., Rozanov A.S., Peltek S.E., Trusova M.Y.
Заглавие : Spatial biodiversity of bacteria along the largest Arctic river determined by next-generation sequencing
Колич.характеристики :9 с
Коллективы : Attracting Leading Scientists to Russian Educational Institutions Program of the Russian Federation [11.G34.31.0014]; Siberian Federal University
Место публикации : FEMS Microbiol. Ecol.: WILEY-BLACKWELL, 2014. - Vol. 89, Is. 2. - С. 442-450. - ISSN 0168-6496, DOI 10.1111/1574-6941.12355. - ISSN 1574-6941
Примечания : Cited References: 36. - This work was supported by the Attracting Leading Scientists to Russian Educational Institutions Program of the Russian Federation, agreement 11.G34.31.0014, and by the project G-1 of Siberian Federal University, carried out according to Federal tasks of the Ministry of Education and Science of Russian Federation.
Предметные рубрики: DISSOLVED ORGANIC-MATTER
INLAND WATERS
CARBON
BACTERIOPLANKTON
COMMUNITY
GREENGENES
ECOSYSTEM
RESERVOIR
PATTERNS
PRIMERS
Ключевые слова (''Своб.индексиров.''): bacterial community--diversity--16s rrna gene--yenisei river
Аннотация: The biodiversity of bacterial communities along the Yenisei River at section c. 1800 km was studied using next-generation sequencing of 16S rRNA genes and common biodiversity indices. Overall, 3022 unique operational taxonomic units were identified. Actinobacteria and Proteobacteria were the dominant phyla at all sampling sites. The highest alpha-diversity values were found in the middle section of the studied river. The beta-diversity of bacterial assemblages in the river was related to the surrounding landscape (biome): three distinctly different bacterial assemblages occurred in sections of the river, situated in mountain taiga, plain taiga and in a region of permafrost, covered by forest-tundra and tundra. Tributaries arising from these different landscapes likely contributed substantially to the variations of Yenisei bacterial communities. In contrast to a prediction of the river continuum concept, the proportion of photoautotrophic Cyanobacteria in bacterial assemblages did not increase downstream, but peaked at the middle section.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Chiu H.-H., Rogozin D.Y., Huang S.-P., Degermendzhy A.G., Shieh W.Y., Tang S.-L.
Заглавие : Aliidiomarina shirensis sp. nov., a halophilic bacterium isolated from Shira Lake in Khakasia, southern Siberia, and a proposal to transfer Idiomarina maris to the genus Aliidiomarina
Место публикации : Int. J. Syst. Evol. Microbiol. - 2014. - Vol. 64, Is. PART 4. - Ст.057851. - С. 1334-1339. - ISSN 14665026 (ISSN) , DOI 10.1099/ijs.0.057851-0
Аннотация: Strain AIST, an aerobic halophilic, Gram-reaction-negative, heterotrophic bacterium isolated from the water of Shira Lake in Khakasia, southern Siberia, was characterized using a polyphasic approach. Our analysis of the 16S rRNA gene sequences showed that 'Aliidiomarina haloalkalitolerans', 'Aliidiomarina sanyensis', Idiomarina maris and AIST formed a distinct lineage. The sequence similarities between AIST and the type strains of species of the genera Idiomarina and Aliidiomarina were 91.6-95.1 % and 94.0-96.9 %, respectively. The major isoprenoid quinone of AIST was ubiquinone 8 (Q-8). Predominant cellular fatty acids were iso-C17: 0, iso-C15: 0 and summed feature 9. The genomic DNA G+C content was 45.8 mol%. It is concluded that AIST represents a novel species of the genus Aliidiomarina, and the name Aliidiomarina shirensis sp. nov. is herein proposed for it. The type strain is AIST (= JCM 17761T = BCRC 80327T). Based on its fatty acid profile and our phylogenetic analysis, we propose that Idiomarina maris be transferred to the genus Aliidiomarina. © 2014 IUMS.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Chiu H.H., Rogozin D.Y., Huang S.P., Degermendzhy A.G., Shieh W.Y., Tang S.L.
Заглавие : Aliidiomarina shirensis sp nov., a halophilic bacterium isolated from Shira Lake in Khakasia, southern Siberia, and a proposal to transfer Idiomarina maris to the genus Aliidiomarina
Колич.характеристики :6 с
Коллективы : National Science Council, Taiwan [NSC 99-2923-B-001-001-MY3]; Russian Foundation for Basic Research [14-04-01060-a]; Siberian Branch of Russian Academy of Sciences, joint Taiwan-Siberian Project [11]
Место публикации : Int. J. Syst. Evol. Microbiol.: SOC GENERAL MICROBIOLOGY, 2014. - Vol. 64. - С. 1334-1339. - ISSN 1466-5026, DOI 10.1099/ijs.0.057851-0. - ISSN 1466-5034
Примечания : Cited References: 22. - We thank Dr Egor S. Zadereev and Dr Vladimir V. Zykov at the Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Krasnoyarsk, for assistance with sampling. This study was supported by Russia Taiwan joint project funding (NSC 99-2923-B-001-001-MY3) from the National Science Council, Taiwan, the Russian Foundation for Basic Research, Grant No. 14-04-01060-a and Siberian Branch of Russian Academy of Sciences, joint Taiwan-Siberian Project No. 11.
Предметные рубрики: SHALLOW COASTAL WATER
RIBOSOMAL-RNA GENE
EMENDED DESCRIPTION
PSEUDIDIOMARINA
PHYLOTYPES
SEQUENCE
TAIWAN
Аннотация: Strain AIS(T), an aerobic halophilic, Gram-reaction-negative, heterotrophic bacterium isolated from the water of Shira Lake in Khakasia, southern Siberia, was characterized using a polyphasic approach. Our analysis of the 16S rRNA gene sequences showed that 'Aliidiomarina haloalkalitolerans', 'Allidiomarina sanyensis', Idiomarina maris and AIS(T) formed a distinct lineage. The sequence similarities between AIS(T) and the type strains of species of the genera Idiomarina and Aliidiomarina were 91.6-95.1 % and 94.0-96.9 %, respectively. The major isoprenoid quinone of AIS(T) was ubiquinone 8 (Q-8). Predominant cellular fatty acids were iso-C-17:0, iso-C-15:0 and summed feature 9. The genomic DNA G+C content was 45.8 mol%. It is concluded that AIS(T) represents a novel species of the genus Aliidiomarina, and the name Aliidiomarina shirensis sp. nov. is herein proposed for it. The type strain is AIST (=JCM 17761(T)=BCRC 80327(T)). Based on its fatty acid profile and our phylogenetic analysis, we propose that Idiomarina mans be transferred to the genus Aliidiomarina.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : VOROBEVA T.I., VYSOTSKII E.S., ZAVORUEV V.V., MEZHEVIKIN V.V.
Заглавие : REGULATION OF LUCIFERASE SYNTHESIS IN PHOTOBACTERIUM-MANDAPAMENSIS
Колич.характеристики :4 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1980. - Vol. 49, Is. 4. - P452-455. - ISSN 0026-2617
Примечания : Cited References: 8
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : VOLOVA T.G., KALCHEVA G.S., STASISHINA G.N., KASAEVA G.E.
Заглавие : GROWTH OF HYDROGEN BACTERIA DURING INHIBITION BY CARBON-MONOXIDE
Колич.характеристики :6 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1980. - Vol. 49, Is. 4. - P407-412. - ISSN 0026-2617
Примечания : Cited References: 11
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : KHLEBOPROS T.R., TEREMOVA M.I., PISMAN T.I., PECHURKIN N.S., LADYGINA V.P., ELKINA T.V.
Заглавие : INTERACTION IN A PHAGE-BACTERIUM SYSTEM
Колич.характеристики :5 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1980. - Vol. 49, Is. 3. - P370-374. - ISSN 0026-2617
Примечания : Cited References: 16
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Kolmakova O.V., Gladyshev M.I., Rozanov A.S., Peltek S.E., Trusova M.Y.
Заглавие : Spatial biodiversity of bacteria along the largest Arctic river determined by next-generation sequencing
Место публикации : FEMS Microbiol. Ecol. - 2014. - Vol. 89, Is. 2. - С. 442-450. - ISSN 15746941 (ISSN) , DOI 10.1111/1574-6941.12355
Ключевые слова (''Своб.индексиров.''): 16s rrna gene--bacterial community--diversity--yenisei river--actinobacteria--bacteria (microorganisms)--cyanobacteria--proteobacteria
Аннотация: The biodiversity of bacterial communities along the Yenisei River at section c. 1800 km was studied using next-generation sequencing of 16S rRNA genes and common biodiversity indices. Overall, 3022 unique operational taxonomic units were identified. Actinobacteria and Proteobacteria were the dominant phyla at all sampling sites. The highest alpha-diversity values were found in the middle section of the studied river. The beta-diversity of bacterial assemblages in the river was related to the surrounding landscape (biome): three distinctly different bacterial assemblages occurred in sections of the river, situated in mountain taiga, plain taiga and in a region of permafrost, covered by forest-tundra and tundra. Tributaries arising from these different landscapes likely contributed substantially to the variations of Yenisei bacterial communities. In contrast to a prediction of the river continuum concept, the proportion of photoautotrophic Cyanobacteria in bacterial assemblages did not increase downstream, but peaked at the middle section. © 2014 Federation of European Microbiological Societies.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : PISMAN T.I., SOMOVA L.A., SARANGOVA A.B., PECHURKIN N.S.
Заглавие : EXPERIMENTAL-MODEL OF A GAS-CLOSED AUTOTROPH HETEROTROPH ECOSYSTEM
Колич.характеристики :3 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1995. - Vol. 64, Is. 5. - С. 560-562. - ISSN 0026-2617
Примечания : Cited References: 7
Аннотация: The dynamics of components were studied in a gas-closed autotroph-heterotroph ecosystem with spatially separated components. Oxygen-producing green microscopic algae served as the autotrophic component, and carbon dioxide-producing yeasts served as the heterotrophic component. The longevity of the gas-closed autotroph-heterotroph system was two times greater than that of separately cultivated components. Making the system more closed by additing glucose (the limiting factor for heterotroph growth) prolonged the longevity of the system up to 25 days. Further system closing by complicating the heterotrophic component (comprised now of two yeast species differing in the rate of substrate consumption) further increased the longevity of the system and the biomass of both the autotrophic and heterotrophic components.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Pechurkin N.S., Somova L.A., Polonskii V.I., Pisman T.I., Sarangova A.B., Polonskaya D.E., Sadovskaya G.M.
Заглавие : Influence of rhizosphere bacteria of the genus Pseudomonas on the growth of wheat seedlings under conditions of complete mineral supply and nitrogen deficiency
Колич.характеристики :5 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1997. - Vol. 66, Is. 4. - С. 461-465. - ISSN 0026-2617
Примечания : Cited References: 9
Ключевые слова (''Своб.индексиров.''): pseudomonas--wheat--nitrogen--growth--biomass--transpiration
Аннотация: The influence of two rhizosphere bacteria-Pseudomonas fluorescens and Pseudomonas putida-on the growth of wheat seedlings was studied under conditions of complete mineral supply and nitrogen deficiency in the medium. On complete mineral medium, the plants that developed from the seeds inoculated with the pseudomonads had some advantages for growth over those developed from the non-inoculated seeds. Inoculated plants showed an increased transpiration and a higher content of organic nitrogen in their biomass. Under conditions of nitrogen deficiency in the medium, no differences were found between inoculated and noninoculated plants. No competition for the nitrogen sources was revealed between the bacteria and plants; the development of the rhizosphere bacteria was limited by the rate of organic compound excretion by plant roots. The stimulatory effect produced on plant growth by the rhizosphere bacteria was shown to vary depending on the environmental factors.
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10.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : GITELZON I.I., VOROBEVA T.I.
Заглавие : LUMINESCENT BACTERIA FROM THE INTESTINES OF FISHES INHABITING THE INDIAN-OCEAN
Колич.характеристики :4 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1986. - Vol. 55, Is. 3. - С. 396-399. - ISSN 0026-2617
Примечания : Cited References: 5
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11.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Volova T.G., Shishatskaya E.I., Nikolaeva E.D., Sinskey A.J.
Заглавие : In vivo study of 2D PHA matrices of different chemical compositions: Tissue reactions and biodegradations
Место публикации : Mater. Sci. Technol. - 2014. - Vol. 30, Is. 5. - С. 549-557. - ISSN 17432847 (ISSN) , DOI 10.1179/1743284713Y.0000000470
Ключевые слова (''Своб.индексиров.''): biocompatibility--biodegradation--implantation--pha--polyhydroxyalkanoates--tissue response--biocompatibility--biodegradable polymers--copolymers--degradation--ion implantation--microbiology--tissue--chemical compositions--foreign body giant cells--hydroxybutyric acids--maximum thickness--pha--polyhydroxyalkanoates--polymer matrices--tissue response--biodegradation
Аннотация: Matrices based on resorbable polyhydroxyalkanoates (PHAs) of five types {a homopolymer of 3- hydroxybutyric acid, copolymers of 3-hydroxybutyric and 4-hydroxybutyric acids [P(3HB/4HB)], 3-hydroxybutyric and 3-hydroxyvaleric acids [P(3HB/3HV)], 3-hydroxybutyric and 3-hydroxyhexanoic acids [P(3HB/3HHx)]} have been constructed and characterised. No significant differences have been found in tissue response to implantation of these PHAs. Non-coarse fibrous capsules that formed around PHA matrices reached their maximum thickness (60-90 ?m) 90 days after implantation; by day 180, the average thickness of the capsules had decreased by 1·5-2·3 times. The number of foreign body giant cells, resorbing PHAs, remained high. In vivo biodegradation behaviour of polymer matrices is related to the chemical composition of the PHA. Matrices prepared from copolymers P(3HB/4HB) and P(3HB/3HHx) exhibited the fastest degradation rates. P3HB/3HV matrices were degraded more slowly, and P3HB matrices were the most durable. In the PHA matrices that were degraded more slowly, giant cell reaction developed later. © 2014 Institute of Materials, Minerals and Mining.
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12.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : KHLEBOPROS T.R., TEREMOVA M.I., PISMAN T.I., PECHURKIN N.S., LADYGINA V.P., ELKINA T.V.
Заглавие : INTERACTION IN A PHAGE-BACTERIUM SYSTEM
Колич.характеристики :5 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1980. - Vol. 49, Is. 3. - С. 370-374. - ISSN 0026-2617
Примечания : Cited References: 16
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13.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : FURYAEVA A.V., SAUBENOVA M.G., PUZYREVSKAYA O.M., MUKHAMEDIEVA U.S., TUSHKOVA G.I., PISMAN T.I., PECHURKIN N.S.
Заглавие : EFFECT OF INHIBITING SODIUM-CHLORIDE CONCENTRATIONS ON THE GROWTH OF CANDIDA-TROPICALIS UNDER CONTINUOUS PH-STAT CULTURING CONDITIONS
Колич.характеристики :6 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1985. - Vol. 54, Is. 6. - С. 708-713. - ISSN 0026-2617
Примечания : Cited References: 18
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14.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : VOLOVA T.G., STASISHINA G.N., KASAEVA G.E.
Заглавие : GROWTH OF HYDROGEN-OXIDIZING BACTERIA AND CARBOXYDOBACTERIA STUDIED DURING THEIR COMBINED CULTURING
Колич.характеристики :4 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1984. - Vol. 53, Is. 5. - P575-578. - ISSN 0026-2617
Примечания : Cited References: 13
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15.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : ZAVORUEV V.V., MEZHEVIKIN V.V.
Заглавие : CULTIVATION OF THE LUMINESCENT BACTERIUM PHOTOBACTERIUM-LEIOGNATHI CONTROLLED BY LUMINESCENCE
Колич.характеристики :6 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1982. - Vol. 51, Is. 2. - P185-190. - ISSN 0026-2617
Примечания : Cited References: 8
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16.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : KOVROV B.G., TIRRANEN L.S., TITOVA G.T.
Заглавие : METABOLIC INTERACTION IN MICROBIAL CENOSES FORMED DURING CULTIVATION OF WHEAT IN A PHYTOTRON
Колич.характеристики :4 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1981. - Vol. 50, Is. 4. - P524-527. - ISSN 0026-2617
Примечания : Cited References: 13
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17.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : ZAVORUEV V.V., VYSOTSKII E.S., MEZHEVIKIN V.V.
Заглавие : PHOTOINHIBITION OF LUMINESCENCE OF PHOSPHORESCENT BACTERIA
Колич.характеристики :5 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1985. - Vol. 54, Is. 1. - P23-27. - ISSN 0026-2617
Примечания : Cited References: 11
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18.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : KALACHEVA G.S., VYSOTSKII E.S.
Заглавие : CHANGE IN LIPIDS AND THEIR FATTY-ACID COMPOSITION IN BATCH CULTURING OF LUMINESCENT BACTERIA
Колич.характеристики :5 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1984. - Vol. 53, Is. 6. - P756-760. - ISSN 0026-2617
Примечания : Cited References: 16
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19.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : SALNIKOV M.V., VYSOTSKII E.S., ZAVORUEV V.V., MEZHEVIKIN V.V.
Заглавие : CHANGES IN PERIPLASMIC SPACE OF LUMINESCENT BACTERIA AS A FUNCTION OF LUMINESCENCE INTENSITY
Колич.характеристики :4 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1984. - Vol. 53, Is. 5. - P606-609. - ISSN 0026-2617
Примечания : Cited References: 8
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20.

Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : VYSOTSKII E.S., RODICHEVA E.K., SHCHERBAKOVA G.Y.
Заглавие : THE QUANTUM YIELD OF BACTERIAL LUMINESCENCE
Колич.характеристики :4 с
Место публикации : Microbiology: MAIK NAUKA/INTERPERIODICA, 1981. - Vol. 50, Is. 4. - P419-422. - ISSN 0026-2617
Примечания : Cited References: 15
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