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The novel extremely psychrophilic luciferase from Metridia longa: Properties of a high-purity protein produced in insect cells / M. D. Larionova, S. V. Markova, E. S. Vysotski // Biochem. Biophys. Res. Commun. - 2017. - Vol. 483, Is. 1. - P772-778, DOI 10.1016/j.bbrc.2016.12.067. - Cited References:24. - The cloning of cDNAs encoding MLuc2 isoforms of M. longa was supported by Bayer AG (Germany) and the state budget allocated to the fundamental research at the Russian Academy of Sciences (project No. 01201351504); all other studies were funded by RFBR and Government of Krasnoyarsk Territory according to the research project No. 16-44-242099. . - ISSN 0006-291X. - ISSN 1090-2104

РУБ Biochemistry & Molecular Biology + Biophysics
Рубрики:
CDNA CLONING
EXPRESSION
ENZYME
Кл.слова (ненормированные):
Bioluminescence -- Coelenterazine -- Bioluminescent reporter -- Psychrophilic -- enzyme -- Molecular adaptation
Аннотация: The bright bioluminescence of copepod Metridia longa is conditioned by a small secreted coelenterazinedependent luciferase (MLuc). To date, three isoforms of MLuc differing in length, sequences, and some properties were cloned and successfully applied as high sensitive bioluminescent reporters. In this work, we report cloning of a novel group of genes from M. longa encoding extremely psychrophilic isoforms of MLuc (MLuc2-type). The novel isoforms share only similar to 54-64% of protein sequence identity with the previously cloned isoforms and, consequently, are the product of a separate group of paralogous genes. The MLuc2 isoform with consensus sequence was produced as a natively folded protein using baculovirus/ insect cell expression system, purified, and characterized. The MLuc2 displays a very high bioluminescent activity and high thermostability similar to those of the previously characterized M. longa luciferase isoform MLuc7. However, in contrast to MLuc7 revealing the highest activity at 12-17 degrees C and 0.5 M NaCl, the bioluminescence optima of MLuc2 isoforms are at similar to 5 degrees C and 1 M NaCl. The MLuc(2) adaptation to cold is also accompanied by decrease of melting temperature and affinity to substrate suggesting a more conformational flexibility of a protein structure. The luciferase isoforms with different temperature optima may provide adaptability of the M. longa bioluminescence to the changes of water temperature during diurnal vertical migrations. (C) 2016 Elsevier Inc. All rights reserved.

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Держатели документа:
Fed Res Ctr Krasnoyarsk Sci Ctr SB RAS, Inst Biophys SB RAS, Photobiol Lab, Krasnoyarsk, Russia.
Siberian Fed Univ, Krasnoyarsk, Russia.

Доп.точки доступа:
Larionova, Marina D.; Markova, Svetlana V.; Vysotski, Eugene S.; Bayer AG (Germany); Russian Academy of Sciences [01201351504]; RFBR; Government of Krasnoyarsk Territory [16-44-242099]

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Physicochemical properties of multicomponent polyhydroxyalkanoates: Novel aspects / T. G. Volova [et al.] // Polym. Sci. Ser. A. - 2017. - Vol. 59, Is. 1. - P98-106, DOI 10.1134/S0965545X17010163 . - ISSN 0965-545X
Кл.слова (ненормированные):
Glycols -- Medical problems -- Melting -- Molecular mass -- Monomers -- Polymers -- Chemical compositions -- Degree of crystallinity -- Degrees of crystallinity -- Multi-component polyhydroxyalkanoates -- Physicochemical property -- Polyhydroxyalkanoates -- Temperature intervals -- Thermal degradation temperatures -- Organic polymers
Аннотация: The physicochemical properties such as the degree of crystallinity and temperature and molecularmass characteristics of a number of polyhydroxyalkanoates of various chemical composition synthesized on a complex carbon substrate by bacteria Cupriavidus eutrophus В10646 have been investigated. Two-, three-, and four-component copolymer samples have different sets and ratios of monomers with various lengths of carbon chains: 3-hydroxybutyrate (3HB), 4-hydroxybutyrate (4HB), 3-hydroxyvalerate (3HV), 3-hydroxyhexanoate (3HH), 3-hydroxy-4-methyl valerate (3H4MV), and diethylene glycol (DEG). It has been shown that weight-average molar mass Мw and polydispersity vary in a wide range with no correlation existing with the composition of copolymer polyhydroxyalkanoates and that thermal stability is preserved in the temperature interval between the melting temperature and the thermal degradation temperature from 100 to 120–140°С. The composition and ratio of monomers most notably affect the degree of crystallinity of polyhydroxyalkanoates. Significant differences between the degrees of crystallinity of three- and four-component polyhydroxyalkanoates have been found for the first time. The degree of crystallinity for copolymers P(3HB/3HV/4HB) is 9–22%, and the degree of crystallinity for copolymers P(3HB/3HV/3HH) and P(3HB/3GV/3H4MV) is 41–63%; this value is close to the degree of crystallinity for diblock copolymers P(3HB)/DEG, which is 56–69%. For the four-component copolymers P(3HB/3GV/4HB/3HH), the degree of crystallinity is 30–41%. The values of Мw for the copolymers P(3HB/DEG) are inhomogeneous and the polymers contain fractions uneven with respect to molecular mass: a high-molecular-mass polymer (Мw from 2700 to 4900 kDa) and a low-molecular-mass polymer (Мw = 46–167 kDa). For the copolymers P(3HB)/DEG and P(3HB/3HV/3H4MV), two peaks are observed in the region of melting with the gap between these peaks being 4–20°С. All of the types of copolymer samples, regardless of the monomer ratio, show an increase in elongation at break against the background of a decrease in tensile stress and Young’s modulus, with these effects being pronounced to different extents. On the whole, the properties of multicomponent polyhydroxyalkanoates differ appreciably. © 2017, Pleiades Publishing, Ltd.

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Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Volova, T. G.; Vinogradova, O. N.; Zhila, N. O.; Kiselev, E. G.; Peterson, I. V.; Vasil’ev, A. D.; Sukovatyi, A. G.; Shishatskaya, E. I.

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Optical limiting in suspension of detonation nanodiamonds in engine oil / K. G. Mikheev [et al.] // J. Nanophoton. - 2017. - Vol. 11, Is. 3. - P113258162, DOI 10.1117/1.JNP.11.032502 . - ISSN 1934-2608
Кл.слова (ненормированные):
Ambient temperature -- Detonation nanodiamonds -- Engine oil -- Optical limiting -- Optical limiting threshold -- Suspension -- Cluster analysis -- Detonation -- Engines -- Laser excitation -- Lubricating oils -- Nanoparticles -- Q switching -- Suspensions (fluids) -- Temperature -- Detonation nanodiamond -- Detonation nanodiamonds -- Engine oil -- Incident radiation -- Nanoparticle clusters -- Optical limiting -- Passive Q-switching -- Wide temperature ranges -- Nanodiamonds
Аннотация: The optical limiting (OL) of detonation nanodiamond (DND) suspensions in engine oil was studied at a temperature range of 20°C to 100°C. Oil suspensions were prepared on the basis of the DNDs with an average nanoparticle cluster size in hydrosols (Daver) of 50 and 110 nm. Raman spectroscopy was used to characterize the samples. The OL investigation was carried out by the z-scan technique. The fundamental (1064 nm) and second (532 nm) harmonic radiations of YAG:Nd3 laser with passive Q-switching as an excitation source were used. The OL thresholds for both suspensions at 532 and 1064 nm were determined. It is shown that a decrease in the average nanoparticle cluster size as well as an increase of the wavelength of the incident radiation leads to the OL threshold increase. It is established that the OL performance is not influenced by increasing the temperature from 20°C to 100°C. The results obtained show the possibility of using the DNDs suspensions in engine oil as an optical limiter in a wide temperature range. © 2017 Society of Photo-Optical Instrumentation Engineers (SPIE).

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Держатели документа:
Institute of Mechanics Ural Branch RAS, 34, T. Baramzinoy Street, Izhevsk, Russian Federation
Institute of Biophysics Siberian Branch of RAS, 50/50, Akademgorodok, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Mikheev, K. G.; Krivenkov, R. Yu.; Mogileva, T. N.; Puzyr, A. P.; Bondar, V. S.; Bulatov, D. L.; Mikheev, G. M.

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Progress in the Study of Bioluminescent Earthworms / N. S. Rodionova [et al.] // Photochem. Photobiol. - 2017. - Vol. 93, Is. 2. - P416-428, DOI 10.1111/php.12709 . - ISSN 0031-8655
Аннотация: Even though bioluminescent oligochaetes rarely catch people's eyes due to their secretive lifestyle, glowing earthworms sighting reports have come from different areas on all continents except Antarctica. A major breakthrough in the research of earthworm bioluminescence occurred in the 1960s with the studies of the North American Diplocardia longa. Comparative studies conducted on 13 earthworm species belonging to six genera showed that N-isovaleryl-3-aminopropanal (Diplocardia luciferin) is the common substrate for bioluminescence in all examined species, while luciferases appeared to be responsible for the color of bioluminescence. The second momentous change in the situation has occurred with the discovery in Siberia (Russia) of two unknown luminous enchytraeids. The two bioluminescent systems belong to different types, have different spectral characteristics and localization, and different temperature and pH optima. They are unique, and this fact is confirmed by the negative results of all possible cross-reactions. The bioluminescent system of Henlea sp. comprises four essential components: luciferase, luciferin, oxygen and calcium ion. For Friderica heliota, the luminescent reaction requires five components: luciferase, luciferin, ATP, magnesium ion and oxygen. Along with luciferin, more than a dozen analogues were isolated from worm biomass. These novel peptide-like natural compounds represent an unprecedented chemistry found in terrestrial organisms. © 2017 The American Society of Photobiology

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Держатели документа:
Laboratory of Photobiology, Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Krasnoyarsk, Russian Federation
Department of Physics, Earth and Environmental Sciences, University of Siena, Siena, Italy
Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russian Federation
Pirogov Russian National Research Medical University, Moscow, Russian Federation

Доп.точки доступа:
Rodionova, N. S.; Rota, E.; Tsarkova, A. S.; Petushkov, V. N.

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Seasonal changes in feeding and relative condition factors of Arctic grayling (Thymallus arcticus) in a stretch of the middle reaches of the Yenisei River / I. V. Zuev [et al.] // Contemp. Probl. Ecol. - 2017. - Vol. 10, Is. 3. - P250-258, DOI 10.1134/S1995425517030143 . - ISSN 1995-4255
Кл.слова (ненормированные):
amphipods -- Apatania crymophila -- feeding spectrum -- relative condition factor -- Thymallus arcticus -- zoobenthos -- Amphipoda -- Apatania crymophila -- Thymallus arcticus -- Trichoptera
Аннотация: The seasonal dynamics of feeding spectra and diet of Arctic graying in a stretch of the middle reaches of the Yenisei River (from the dam of the Krasnoyarsk HPP to the mouth of the Kan River) was studied in 2009–2013. Its connection with the food-supply state and fish growth has been traced. It has been shown that the intensity of fish feeding is relatively stable throughout the year, despite significant fluctuations in zoobenthos biomass. The contribution of groups dominating in diet (amphipods and larvae of caddisflies) changes depending on the month. Amphipods prevail in the diet of fish during the period from June to October and caddisflies prevail in the winter and spring months. Among caddisflies, selective feeding on a small species, Apatania crymophila, has been revealed. The change of the primary diet component during the summer period corresponds to a sharp increase in the coefficients of relative condition factors with a peak in August–September. It has been assumed that changes in the ratio of weight and linear sizes of fish are associated not only with an increase in the water temperature, but also with the grayling switching to the consumption of amphipods with a higher nutrition value. © 2017, Pleiades Publishing, Ltd.

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Держатели документа:
Siberian Federal University, Krasnoyarsk, Russian Federation
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Krasnoyarsk Scientific Center, Akademgorodok 50/50, Krasnoyarsk, Russian Federation

Доп.точки доступа:
V. Zuev, I.; Shulepina, S. P.; Trofimova, E. A.; Zotina, T. A.

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Variability of fluorescence spectra of coelenteramide-containing proteins as a basis for toxicity monitoring / R. R. Alieva, N. S. Kudryasheva // Talanta. - 2017. - Vol. 170. - P425-431, DOI 10.1016/j.talanta.2017.04.043 . - ISSN 0039-9140
Кл.слова (ненормированные):
Coelenteramide-containing fluorescent protein -- Multicolor fluorescent bioassay -- Obelin -- Primary photochemical process -- Protein destruction -- Proton transfer -- Bioassay -- Biomarkers -- Excited states -- Fluorescence -- Fluorophores -- Ionizing radiation -- Proton transfer -- Toxicity -- Electron-excited state -- Fluorescence spectra -- Fluorescent protein -- Green fluorescent protein -- Obelin -- Photochemical process -- Photochemical properties -- Physicochemical process -- Proteins
Аннотация: Nowadays, physicochemical approach to understanding toxic effects remains underdeveloped. A proper development of such mode would be concerned with simplest bioassay systems. Coelenteramide-Containing Fluorescent Proteins (CLM-CFPs) can serve as proper tools for study primary physicochemical processes in organisms under external exposures. CLM-CFPs are products of bioluminescent reactions of marine coelenterates. As opposed to Green Fluorescent Proteins, the CLM-CFPs are not widely applied in biomedical research, and their potential as colored biomarkers is undervalued now. Coelenteramide, fluorophore of CLM-CFPs, is a photochemically active molecule; it acts as a proton donor in its electron-excited states, generating several forms of different fluorescent state energy and, hence, different fluorescence color, from violet to green. Contributions of the forms to the visible fluorescence depend on the coelenteramide microenvironment in proteins. Hence, CLM-CFPs can serve as fluorescence biomarkers with color differentiation to monitor results of destructive biomolecule exposures. The paper reviews experimental and theoretical studies of spectral-luminescent and photochemical properties of CLM-CFPs, as well as their variation under different exposures – chemicals, temperature, and ionizing radiation. Application of CLM-CFPs as toxicity bioassays of a new type is justified. © 2017

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Держатели документа:
Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Akademgorodok 50/50, Krasnoyarsk, Russian Federation
Siberian Federal University, Svobodny Prospect 79, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Alieva, R. R.; Kudryasheva, N. S.

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Multistable states in the biosphere-climate system: towards conceptual models / S. Bartsev, P. Belolipetskii, A. Degermendzhi // V INTERNATIONAL WORKSHOP ON MATHEMATICAL MODELS AND THEIR APPLICATIONS : IOP PUBLISHING LTD, 2017. - Vol. 173: 5th International Workshop on Mathematical Models and their Applications (NOV 07-09, 2016, Krasnoyarsk, RUSSIA). - Ст. UNSP 012005. - (IOP Conference Series-Materials Science and Engineering), DOI 10.1088/1757-899X/173/1/012005. - Cited References:31. - This work was supported by grant RFBR-KKFN No 15-41-04300 and Complex Program of SB RAS No II.2. No 0360-2015-0002. . -

РУБ Materials Science, Multidisciplinary + Mathematics, Applied
Рубрики:
SEA-SURFACE TEMPERATURE
   1980S REGIME SHIFT
   EL-NINO
   PACIFIC
Аннотация: Forecasting response of the biosphere and regional ecosystems to observed and expected climate change is the fundamental problem with obvious practical significance. Fundamental non-linearity of the climate system and biosphere makes feasible implementing multiple states and threshold processes in the biosphere-climate system (BCS) in response to gradually increasing influence factor (greenhouse gas concentrations growth). Really time series analysis of global temperature and other global and local parameters indicates the presence of abrupt transitions between stationary states. Identification of the switching mechanisms using general circulation models of the atmosphere and the ocean is associated with the obvious difficulties due to their complexity. Understanding the nature of such switches at qualitative level can be achieved by using a conceptual small-scale models. Some variants of possible mechanisms capable of generating these shifts and simultaneously supporting quasi-stationary periods between them are discussed.

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Держатели документа:
Inst Biophys SB RAS, Krasnoyarsk Sci Ctr, Krasnoyarsk, Russia.
Inst Computat Modelling SB RAS, Krasnoyarsk Sci Ctr, Krasnoyarsk, Russia.

Доп.точки доступа:
Bartsev, S.; Belolipetskii, P.; Degermendzhi, A.; RFBR-KKFN [15-41-04300]; Complex Program of SB RAS [II.2, 0360-2015-0002]

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Contrasting relationship between macro- and microviscosity of the gelatin- and starch-based suspensions and gels [Text] / D. V. Gulnov, E. V. Nemtseva, V. A. Kratasyuk // Polym. Bull. - 2016. - Vol. 73, Is. 12. - P3421-3435, DOI 10.1007/s00289-016-1664-9. - Cited References:42. - Authors thank Alexander Kheruvimov (REC "Composite Materials and Structures", SUSU, Chelyabinsk, Russia) for assistance in rheological experiments. The research was partially supported by the grants No. 11.G34.31.0058 and 1762 from The Ministry of Education and Science of the Russian Federation and by the state budget allocated to the fundamental research at the Russian Academy of Sciences (Project No. 01201351504). . - ISSN 0170-0839. - ISSN 1436-2449

РУБ Polymer Science
Рубрики:
FLUORESCENT MOLECULAR ROTORS
INTRACELLULAR VISCOSITY
DRUG-DELIVERY
Кл.слова (ненормированные):
Biopolymer -- Gelatin -- Starch -- Physical gel -- Microviscosity -- Molecular -- rotor
Аннотация: The problem of correlation between rheological properties in macro- and micro- scales of media with biopolymers of polypeptide (gelatin) and polysaccharide (starch) nature is investigated. The viscosity of the biopolymer solutions with concentrations 0.5-5 wt% was estimated by standard rotational rheometry technique and with fluorescent molecular rotor at 15-50 A degrees C. Opposite trends were observed for relationship between microviscosity eta (m) and macroviscosity eta for two biopolymers: eta (m) << eta for gelatin and eta (m) >> eta for starch solutions. The temperature dependence of eta (m) followed the monoexponential decay law in all samples over the whole temperature range indicating insensitivity of microviscosity to gel mesh melting under heating. The dissimilarity of macro- and micro-rheological properties of gelatin and starch-containing media is discussed in terms of difference in architecture of the gels.

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Держатели документа:
Siberian Fed Univ, Lab Bioluminescent Biotechnol, Krasnoyarsk 660041, Russia.
Inst Biophys SB RAS, Krasnoyarsk 660036, Russia.

Доп.точки доступа:
Gulnov, Dmitry V.; Nemtseva, Elena V.; Kratasyuk, Valentina A.; Ministry of Education and Science of the Russian Federation [11.G34.31.0058, 1762]; Russian Academy of Sciences [01201351504]

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Properties of a novel quaterpolymer P(3HB/4HB/3HV/3HHx) / T. G. Volova [et al.] // Polymer. - 2016. - Vol. 101. - P67-74, DOI 10.1016/j.polymer.2016.08.048 . - ISSN 0032-3861
Кл.слова (ненормированные):
Physicochemical and mechanical properties -- Polyhydroxyalkanoates -- Quaterpolymers -- Biocompatibility -- Cell culture -- Chain length -- Chains -- Decomposition -- 3-Hydroxyhexanoate -- Degrees of crystallinity -- Elongation at break -- Physico-chemical and mechanical properties -- Polyhydroxyalkanoates -- Quaterpolymers -- Short chain lengths -- Thermal decomposition temperature -- Film preparation
Аннотация: Cupriavidus eutrophus В10646 was used to synthesize a series of polyhydroxyalkanoate (PHA) quaterpolymers composed of the short-chain-length 3-hydroxybutyrate (3HB), 4-hydroxybutyrate (4HB), and 3-hydroxyvalerate (3HV) and the medium-chain-length 3-hydroxyhexanoate (3HHx). The molar fraction of 3HB in the quaterpolymers varied between 63.5 and 93.1 mol.%, 3HV – between 1.1 and 24.6 mol.%, 4HB – between 2.4 and 15.6 mol.%, and 3HHx – between 0.4 and 4.8 mol.%. The properties of PHA quaterpolymers were significantly different from those of the P(3HB) homopolymer: they had much lower degrees of crystallinity (up to 30–45%), and lower melting points and thermal decomposition temperatures, with the interval between these temperatures remaining practically unchanged. Films prepared from PHA quaterpolymers were rougher and more porous than P(3HB) films; they showed higher values of elongation at break (up to 6–113%), i.e. were more elastic. Films prepared from PHA quaterpolymers were biocompatible and had no toxic effect on mouse fibroblast NIH 3T3 cells. © 2016 Elsevier Ltd

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Держатели документа:
Siberian Federal University, 79 Svobodnyi Avenue, Krasnoyarsk, Russian Federation
Institute of Biophysics of Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, Russian Federation
Institute of Chemistry and Chemical Technology of Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, Russian Federation
L.V. Kirensky Institute of Physics of Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Volova, T. G.; Vinogradova, O. N.; Zhila, N. O.; Peterson, I. V.; Kiselev, E. G.; Vasiliev, A. D.; Sukovatiy, A. G.; Shishatskaya, E. I.

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10.

Secondary Production of Highly Unsaturated Fatty Acids by Zoobenthos Across Rivers Contrasting in Temperature [Text] / M. I. Gladyshev [et al.] // River Res. Appl. - 2016. - Vol. 32, Is. 6. - P1252-1263, DOI 10.1002/rra.2945. - Cited References:55. - The work was supported by the project no. 6.1089.214/K of Siberian Federal University carried out according to Federal Tasks of Ministry of Education and Science of Russian Federation and by Russian Federal Tasks of Fundamental Research (project no. 51.1.1). . - ISSN 1535-1459. - ISSN 1535-1467

РУБ Environmental Sciences + Water Resources
Рубрики:
AQUATIC ECOSYSTEMS
   CLIMATE-CHANGE
   YENISEI RIVER
   ALPINE PONDS
   LAKE
Кл.слова (ненормированные):
essential polyunsaturated fatty acids -- river zoobenthos -- secondary -- production -- biodiversity -- water temperature -- climate warming
Аннотация: Highly unsaturated fatty acids (HUFA), namely eicosapentaenoic acid (20:5n-3, EPA) and docosahexaenoic acid (22:6n-3, DHA), which are essential for many animals, including humans, are mainly produced in aquatic trophic webs. In fast-flowing rivers, macrozoobenthos is the main source of HUFA for fish and may be particularly vulnerable to thermal alterations associated with climate change. We studied benthic communities in a unique natural ecosystem: the Yenisei River downstream of the dam of Krasnoyarsk Hydroelectric Power Station with very low temperature in summer because of discharge of cold water from deep in the reservoir and its tributaries with high summer temperature. This natural experiment' allowed to get rid of confounding factors, such as differences in light, seasonality, geology (biogeochemistry) and biogeography (regional species pools). As found, in spite of an increase of biodiversity and rates of daily production in warm rivers compared with cold sites, DHA and partly EPA production of zoobenthos decreased with the increase of temperature because of changes in species composition. Thus, in a climate warming context, we can predict a decrease of production of these HUFA by river zoobenthos and thereby a diminishing of their supply for fish and next to humans. Copyright (c) 2015 John Wiley & Sons, Ltd.

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Держатели документа:
Russian Acad Sci, Inst Biophys, Siberian Branch, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Krasnoyarsk 660041, Russia.

Доп.точки доступа:
Gladyshev, M. I.; Sushchik, N. N.; Shulepina, S. P.; Ageev, A. V.; Dubovskaya, O. P.; Kolmakova, A. A.; Kalachova, G. S.; Siberian Federal University [6.1089.214/K]; Russian Federal Tasks of Fundamental Research [51.1.1]

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11.

Effect of season and trophic level on fatty acid composition and content of four commercial fish species from Krasnoyarsk Reservoir (Siberia, Russia) / N. N. Sushchik, A. E. Rudchenko, M. I. Gladyshev // Fish. Res. - 2017. - Vol. 187. - P178-187, DOI 10.1016/j.fishres.2016.11.016 . - ISSN 0165-7836
Кл.слова (ненормированные):
Fatty acids -- Piscivorous and omnivorous fish -- Season -- Stable isotopes -- Trophic level
Аннотация: Two groups of factors, phylogenetic and ecological, are presently regarded as controlling fatty acid composition of fish, including essential eicosapentaenoic (EPA) and docosahexaenoic (DHA) acids. Environmental effects, e.g., trophic position, temperature and/or seasonality, were previously studied using sums of fatty acids or only their level data. We tested the hypothesis that differences in trophic levels of piscivorous (pike and perch) and omnivorous (roach and bream) fish from a mesotrophic reservoir allow discriminating levels and contents of individual fatty acids, especially EPA and DHA. The more established measurements, i.e., stomach contents and carbon and nitrogen stable isotopes in fish muscles, were also carried out to provide linkages between the different ecological tracers, fatty acids versus stable isotopes, and matching the methods for long-term food sources (fatty acids and stable isotopes) and recent foraging (stomach content analysis). We also studied a putative influence of seasonality. Similar to other studies, there were seasonal changes in fatty acid composition and contents of two fish, perch and roach, due to direct and indirect effects of water temperature. Meanwhile, the piscivorous and omnivorous species captured in the same month, were explicitly differentiated on a base of stable isotopes and fatty acids. Significantly higher percentages and contents of DHA in piscivorous fish, perch and pike, relatively to those in roach and bream, likely indicated a higher trophic transfer efficiency for this essential fatty acid. All the fishes have commercial importance for regional fishery and are harvested from the studied reservoir for human nutrition. Regarding content of EPA + DHA (mg g?1 fish) as the indicator of nutritive value for humans, pike had the highest nutritive value, roach and perch had intermediate overlapped values, and bream was of the least benefit. © 2016 Elsevier B.V.

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Держатели документа:
Institute of Biophysics of Federal Research Center “Krasnoyarsk Science Center” of Siberian Branch of Russian Academy of Sciences, Akademgorodok, 50/50, Krasnoyarsk, Russian Federation
Siberian Federal University, Svobodny av, 79, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Sushchik, N. N.; Rudchenko, A. E.; Gladyshev, M. I.

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12.

Exposure of luminous marine bacteria to low-dose gamma-radiation / N. S. Kudryasheva [et al.] // J. Environ. Radioact. - 2017. - Vol. 169-170. - P64-69, DOI 10.1016/j.jenvrad.2017.01.002 . - ISSN 0265-931X
Кл.слова (ненормированные):
Bioassay -- Low-dose gamma-radiation -- Luminous marine bacteria -- Mutagenic effect -- Radiotoxicity -- Temperature dependence -- Bacteria -- Bioassay -- Bioluminescence -- Gamma rays -- Ionizing radiation -- Irradiation -- Phosphorescence -- Physiological models -- Radiation effects -- Temperature distribution -- Low dose -- Marine bacterium -- Mutagenic effect -- Radiotoxicity -- Temperature dependence -- Radiation -- Bacteria (microorganisms) -- Photobacterium phosphoreum
Аннотация: The study addresses biological effects of low-dose gamma-radiation. Radioactive 137Cs-containing particles were used as model sources of gamma-radiation. Luminous marine bacterium Photobacterium phosphoreum was used as a bioassay with the bioluminescent intensity as the physiological parameter tested. To investigate the sensitivity of the bacteria to the low-dose gamma-radiation exposure (?250 mGy), the irradiation conditions were varied as follows: bioluminescence intensity was measured at 5, 10, and 20°С for 175, 100, and 47 h, respectively, at different dose rates (up to 4100 ?Gy/h). There was no noticeable effect of gamma-radiation at 5 and 10°С, while the 20°С exposure revealed authentic bioluminescence inhibition. The 20°С results of gamma-radiation exposure were compared to those for low-dose alpha- and beta-radiation exposures studied previously under comparable experimental conditions. In contrast to ionizing radiation of alpha and beta types, gamma-emission did not initiate bacterial bioluminescence activation (adaptive response). As with alpha- and beta-radiation, gamma-emission did not demonstrate monotonic dose-effect dependencies; the bioluminescence inhibition efficiency was found to be related to the exposure time, while no dose rate dependence was found. The sequence analysis of 16S ribosomal RNA gene did not reveal a mutagenic effect of low-dose gamma radiation. The exposure time that caused 50% bioluminescence inhibition was suggested as a test parameter for radiotoxicity evaluation under conditions of chronic low-dose gamma irradiation. © 2017 Elsevier Ltd

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Держатели документа:
Institute of Biophysics SB RAS, Federal Research Center ‘Krasnoyarsk Science Center SB RAS’, 50/50 Akademgorodok, Krasnoyarsk, Russian Federation
Siberian Federal University, 79 Svobodny Prospect, Krasnoyarsk, Russian Federation
Krasnoyarsk State Agrarian University, 90 Mira Prospect, Krasnoyarsk, Russian Federation
SB RAS Genomics Core Facility, Institute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk, Russian Federation

Доп.точки доступа:
Kudryasheva, N. S.; Petrova, A. S.; Dementyev, D. V.; Bondar, A. A.

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13.

Salinity modulates thermotolerance, energy metabolism and stress response in amphipods Gammarus lacustris / K. P. Vereshchagina [et al.] // PeerJ. - 2016. - Vol. 2016, Is. 11, DOI 10.7717/peerj.2657 . - ISSN 2167-8359
Кл.слова (ненормированные):
Adaptation -- Amphipoda -- Gammarus lacustris -- Salinity -- Thermal tolerance
Аннотация: Temperature and salinity are important abiotic factors for aquatic invertebrates. We investigated the influence of different salinity regimes on thermotolerance, energy metabolism and cellular stress defense mechanisms in amphipods Gammarus lacustris Sars from two populations. We exposed amphipods to different thermal scenarios and determined their survival as well as activity of major antioxidant enzymes (peroxidase, catalase, glutathione S-transferase) and parameters of energy metabolism (content of glucose, glycogen, ATP, ADP, AMP and lactate). Amphipods from a freshwater population were more sensitive to the thermal challenge, showing higher mortality during acute and gradual temperature change compared to their counterparts from a saline lake. A more thermotolerant population from a saline lake had high activity of antioxidant enzymes. The energy limitations of the freshwater population (indicated by low baseline glucose levels, downward shift of the critical temperature of aerobic metabolism and inability to maintain steady-state ATP levels during warming) was ob- served, possibly reflecting a trade-off between the energy demands for osmoregulation under the hypo-osmotic condition of a freshwater environment and protection against temperature stress. © 2016 Vereshchagina et al.

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Institute of Biology, Irkutsk State University, Irkutsk, Russian Federation
Baikal Research Centre, Irkutsk, Russian Federation
Institute of Biophysics SB RAS, Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation
Institute for Biological Sciences, University of Rostock, Rostock, Germany

Доп.точки доступа:
Vereshchagina, K. P.; Lubyaga, Y. A.; Shatilina, Z.; Bedulina, D.; Gurkov, A.; Axenov-Gribanov, D. V.; Baduev, B.; Kondrateva, E. S.; Gubanov, M.; Zadereev, E.; Sokolova, I.; Timofeyev, M.

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14.

Experimental modeling of the influence of the rise in average summer temperatures on carbon circulation in tundra ecosystems / Y. V. Barkhatov [et al.] // Dokl. Earth Sci. - 2016. - Vol. 471, Is. 1. - P1168-1170, DOI 10.1134/S1028334X16110106 . - ISSN 1028-334X
Кл.слова (ненормированные):
Carbon dioxide -- Ecology -- Landforms -- Carbon fluxes -- Climate condition -- Comparative evaluations -- Experimental modeling -- Physical simulation -- Soil respiration -- Summer temperature -- Temperature rise -- Ecosystems
Аннотация: A sealed vegetation chamber was designed and constructed for physical simulation of climate conditions in the Subarctic zone during the spring–summer time. The small laboratory tundra-simulating ecosystem (TSE) was created for comparative evaluation of the rates of soil respiration and of the total balance of carbon fluxes in tundra ecosystems. The test experiment was performed to study the TSE response to a temperature rise in air and soil by 2°C in terms of the intensity of the СО2 flux. It was shown that this increase in temperature would cause a pronounced shift in the balance of СО2 production and utilization in the ecosystem from near-zero values to a stable generation of 24 ?mol/h of CO2 per 1 kg of dry biomass. © 2016, Pleiades Publishing, Ltd.

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Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Barkhatov, Y. V.; Tikhomirov, A. A.; Ushakova, S. A.; Shikhov, V. N.; Bartsev, S. I.; Degermendzhi, A. G.

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15.

Production and properties of bacterial cellulose by the strain Komagataeibacter xylinus B-12068 / T. G. Volova [et al.] // Appl. Microbiol. Biotechnol. - 2018. - P1-12, DOI 10.1007/s00253-018-9198-8 . - ISSN 0175-7598
Кл.слова (ненормированные):
Bacterial cellulose -- Growth conditions -- Komagataeibacter xylinus -- Biocompatibility -- Cell culture -- Cellulose -- Cultivation -- Glucose -- 3t3 mouse fibroblasts -- Bacterial cellulose -- Cultivation conditions -- Emission spectrometry -- Ethanol concentrations -- Growth conditions -- Komagataeibacter xylinus -- Physical and mechanical properties -- Substrates
Аннотация: A strain of acetic acid bacteria, Komagataeibacter xylinus B-12068, was studied as a source for bacterial cellulose (BC) production. The effects of cultivation conditions (carbon sources, temperature, and pH) on BC production and properties were studied in surface and submerged cultures. Glucose was found to be the best substrate for BC production among the sugars tested; ethanol concentration of 3% (w/v) enhanced the productivity of BC. Optimization of medium and cultivation conditions ensures a high production of BC on glucose and glycerol, up to 2.4 and 3.3 g/L/day, respectively. C/N elemental analysis, emission spectrometry, SEM, DTA, and X-ray were used to investigate the structure and physical and mechanical properties of the BC produced under different conditions. MTT assay and SEM showed that native cellulose membrane did not cause cytotoxicity upon direct contact with NIH 3T3 mouse fibroblast cells and was highly biocompatible. © 2018 Springer-Verlag GmbH Germany, part of Springer Nature

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Держатели документа:
Siberian Federal University, 79 Svobodny pr, Krasnoyarsk, Russian Federation
Institute of Biophysics SB RAS, Siberian Federal University, Akademgorodok 50/50, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Volova, T. G.; Prudnikova, S. V.; Sukovatyi, A. G.; Shishatskaya, E. I.

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16.

Content of highly unsaturated fatty acids in fish from rivers of contrasting temperature / N. N. Sushchik [et al.] // River Res. Appl. - 2018. - Vol. 34, Is. 6. - P565-574, DOI 10.1002/rra.3286. - Cited References:73. - Council on Grants from the President of the Russian Federation for Support of Leading Scientific Schools, Grant/Award Number: NSh-9249.2016.5; Russian Federal Tasks of Fundamental Research, Grant/Award Number: 51.1.1; Federal Tasks of Ministry of Education and Science of the Russian Federation for Siberian Federal University, Grant/Award Number: 6.1504.2017/4.6 . - ISSN 1535-1459. - ISSN 1535-1467

РУБ Environmental Sciences + Water Resources
Рубрики:
TROUT ONCORHYNCHUS-MYKISS
   SALMON SALMO-SALAR
   FRESH-WATER
   LONG-CHAIN
Кл.слова (ненормированные):
benthivorous fish -- climate warming -- polyunsaturated fatty acids -- river -- water temperature
Аннотация: Contents of highly unsaturated long-chain fatty acids of omega-3 family (HUFA); eicosapentaenoic acid (EPA; 20:5n-3); and docosahexaenoic acid (DHA; 22:6n-3) are the principal indicators of the nutritive quality of fish for humans. Effects of environmental factors, first of all water temperature, on EPA and DHA contents in fish tissue are not currently completely understood. To reveal the putative effect of water temperature, fatty acid composition and contents were studied for 6 fish species, inhabiting the cold waters of the Yenisei River (Siberia, Russia) downstream of a dam (hypolimnetic release from reservoir) and its adjacent warm water tributaries (the Mana River and the Kacha River). It was hypothesized that (a) fish species from the cold river would have higher HUFA contents than fish from the warm rivers and (b) temperature would be negatively correlated with HUFA content in fish species. Using gas chromatography-mass spectrometry, distinct species-specific fatty acid profiles were observed, whereas contents of the essential fatty acids, EPA and DHA, in fish species from the cold Yenisei River were in general similar to that from warm tributaries. Thus, in contrast to the first hypothesis, phylogenetic factors overweighed the effect of water temperature and food (benthic invertebrate) composition, on fatty acid composition and HUFA content in fish. For the second hypothesis, for the 2 species inhabiting both cold and warm rivers, only one had higher EPA and DHA content at lower temperatures. Consequently, the response of EPA and DHA content in fish tissue to temperature variations may be species-specific.

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Russian Acad Sci, Krasnoyarsk Sci Ctr, Fed Res Ctr, Siberian Branch,Inst Biophys, Krasnoyarsk, Russia.
Siberian Fed Univ, Krasnoyarsk, Russia.

Доп.точки доступа:
Sushchik, N. N.; Zuev, I. V.; Kalachova, G. S.; Ageev, A. V.; Gladyshev, M. I.; Council on Grants from the President of the Russian Federation for Support of Leading Scientific Schools [NSh-9249.2016.5]; Russian Federal Tasks of Fundamental Research [51.1.1]; Federal Tasks of Ministry of Education and Science of the Russian Federation for Siberian Federal University [6.1504.2017/4.6]

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17.

Properties of PHA bi-, ter-, and quarter-polymers containing 4-hydroxybutyrate monomer units / N. Zhila, E. Shishatskaya // Int. J. Biol. Macromol. - 2018. - Vol. 111. - P1019-1026, DOI 10.1016/j.ijbiomac.2018.01.130. - Cited References:39. - The research was supported by the Russian Science Foundation (grant No. 17-15-01352). . - ISSN 0141-8130. - ISSN 1879-0003

РУБ Biochemistry & Molecular Biology + Chemistry, Applied + Polymer Science
Рубрики:
ALCALIGENES-FAECALIS T1
COMAMONAS-ACIDOVORANS
ENZYMATIC DEGRADATION
Кл.слова (ненормированные):
Polyhydroxyalkanoates -- 4-Hydroxybutyrate monomer units -- Physicochemical -- and mechanical properties
Аннотация: The present study investigates physicochemical, mechanical, and biological properties of polyhydroxyalkanoate (PHA) copolymers containing 4-hydroxybutyrate (4HB) synthesized in Cupriavidus eutrophus B10646 culture. In poly(3-hydroxybutyrate/4-hydroxybutyrate) [P(3HB/4HB)]bipolymers, 4HB varied between 10.4 and 75.0 mol%; in poly(3-hydroxybutyrate/3-hydroxyvalerate/4-hydroxybutyrate) terpolymers, 4HB constituted 28.7-55.6 mol%; and in poly(3-hydroxybutyrate/3-hydroxyvalerate/4-hydroxybutyrate/3-hydroxyhexanoate) quaterpolymers, 4HB varied between 9.3 and 13.3 mol%. The degree of crystallinity of P(3HB/4HB) copolymers decreased consistently with an increase in 4HB content, reaching 38%. The incorporation of 3-hydroxyvalerate and 3-hydroxyhexanoate into copolymers enhanced that effect. The effect of 4HB monomer units on temperature properties of copolymers was exhibited as lowering of the melting temperature and crystallization temperature, which improved the processing-related properties of the copolymers. All copolymers containing 4HB showed enhanced elongation at break compared to poly(3-hydroxybutyrate). Polymer films prepared from PHA5 with different chemical composition had similar microstructure and porosity and had no toxic effect on mouse fibroblast NIH 3 T3 cells, proving their high biocompatibility. (C) 2018 Elsevier B.V. All rights reserved.

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Siberian Fed Univ, 79 Svobodnyi Ave, Krasnoyarsk 660041, Russia.
RAS, Krasnoyarsk Sci Ctr, Fed Res Ctr, Inst Biophys,SB, Krasnoyarsk 660036, Russia.

Доп.точки доступа:
Zhila, Natalia; Shishatskaya, Ekaterina; Russian Science Foundation [17-15-01352]

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18.

Analysis of the gas exchange and water balance in a closed experimental model of the artificial ecosystem intended for an estimated portion of a human / S. Ushakova [et al.] // Acta Astronaut. - 2018, DOI 10.1016/j.actaastro.2018.07.022 . - ISSN 0094-5765
Кл.слова (ненормированные):
Experimental model of a closed ecological system -- Higher plant community -- Human respiratory function -- Water balance -- СО2 and О2 gas exchange -- Carbon dioxide -- Evapotranspiration -- Closed ecological systems -- Gas exchange -- Higher plants -- Respiratory function -- Water balance -- Ecosystems
Аннотация: This study was performed to investigate water and gas exchange in the experimental model of a closed ecological system (CES) intended for an estimated portion of a human in the long-duration (several-month) experiment. The diversity of the vegetable conveyor in the system was increased. Human wastes were involved in mass exchange processes, and human respiratory function was periodically connected to the experimental model of a CES. The experimental model of a CES was used to quantify regeneration of the gaseous atmosphere with oxygen and carbon dioxide loops by linking the photosynthesizing compartment with the heterotrophic compartment (soil-like substrate) and by the periodic connection of the human respiratory function. Under the preset light and temperature conditions, atmospheric CO2 concentration in the CES model intended for a portion of a human was maintained at a level that neither limited photosynthetic processes nor was harmful to humans (800–2000 ppm) during the 154-day experiment. At the same time, O2 concentration did not either drop below 20.8% or rise above 22.6%. The amount of the evapotranspiration water collected in the system could satisfy 50% of the daily water requirement of a human (with all the water used and excreted by the human being processed and used to irrigate plants). The evapotranspiration water did not need to be additionally purified before being used by humans. Thus, in the experimental model of the closed ecological system, human oxygen and food requirements (per 0.05 portion of a human) were matched to the function of the heterotrophic compartment and the photosynthesizing activity of the multispecies uneven-aged higher plant community. © 2018 IAA

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Держатели документа:
Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, 50/50 Akademgorodok, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Ushakova, S.; Tikhomirova, N.; Velichko, V.; Trifonov, S.; Morozov, Y.; Kalacheva, G.; Pavlova, A.; Tikhomirov, A.

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19.

Intraspecies variability of fatty acid content and composition of a cosmopolitan benthic invertebrate, Gammarus lacustris / O. N. Makhutova [et al.] // Inland Waters. - 2018. - Vol. 8, Is. 3. - P356-367, DOI 10.1080/20442041.2018.1487157 . - ISSN 2044-2041
Кл.слова (ненормированные):
essential polyunsaturated fatty acids -- fish -- food quality -- salinity -- temperature
Аннотация: Aquatic invertebrates are valuable dietary sources of essential polyunsaturated fatty acids, eicosapentaenoic acid (EPA, 20:5n-3) and docosahexaenoic acid (DHA, 22:6n-3), for fish. Phylogeny, diet, and various ecological factors affect the fatty acid composition of aquatic invertebrates. We focused our study on the effect of ecological factors to a cosmopolitan species inhabiting lakes that differed in salinity, temperature, and presence/absence of predators (fish). To avoid the effect of phylogeny, which strongly influences the fatty acid composition of animals, we studied several populations of one cosmopolitan benthic species, Gammarus lacustris Sars. We found that differences in fatty acid percentages of G. lacustris were mainly affected by differences in their diets. Some populations preferred dinoflagellates, cryptophytes, green algae/cyanobacteria, and bacteria; other populations selected diatoms; and still other populations consumed zooplankton or allochthonous (terrestrial) organic matter. The salinity and presence/absence of fish affected the contents of EPA and DHA in G. lacustris. Populations from saline and fishless lakes had significantly higher contents of EPA and DHA. Thus, stocking of fishless lakes dominated by G. lacustris with fish could lead to a decrease in EPA and DHA contents in the gammarids. We propose that some saline and fishless lakes could be used as a source of gammarids for aquaculture fish feeding. © 2018, © 2018 International Society of Limnology (SIL).

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Institute of Biophysics of Federal Research Center “Krasnoyarsk Science Center” of Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation
Tyumen Scientific Centre Siberian Branch, Russian Academy of Sciences, Institute of the problems of Northern development, Tyumen, Russian Federation

Доп.точки доступа:
Makhutova, O. N.; Shulepina, S. P.; Sharapova, T. A.; Kolmakova, A. A.; Glushchenko, L. A.; Kravchuk, E. S.; Gladyshev, M. I.

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20.

Disposable luciferase-based microfluidic chip for rapid assay of water pollution / I. Denisov [et al.] // Lumin. - 2018. - Vol. 33, Is. 6. - P1054-1061, DOI 10.1002/bio.3508 . - ISSN 1522-7235
Кл.слова (ненормированные):
bioassay -- lab-on-a-chip -- luciferase -- microfluidics -- solvent bonding
Аннотация: In the present study, we demonstrate the use of a disposable luciferase-based microfluidic bioassay chip for environmental monitoring and methods for fabrication. The designed microfluidic system includes a chamber with immobilized enzymes of bioluminescent bacteria Photobacterium leiognathi and Vibrio fischeri and their substrates, which dissolve after the introduction of the water sample and thus activate bioluminescent reactions. Limits of detection for copper (II) sulfate, 1,3-dihydroxybenzene and 1,4-benzoquinone for the proposed microfluidic biosensor measured 3 ?M, 15 mM, and 2 ?M respectively, and these values are higher or close to the level of conventional environmental biosensors based on lyophilized bacteria. Approaches for entrapment of enzymes on poly(methyl methacrylate) (PMMA) plates using a gelatin scaffold and solvent bonding of PMMA chip plates under room temperature were suggested. The proposed microfluidic system may be used with some available luminometers and future portable luminescence readers. © 2018 John Wiley & Sons, Ltd.

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Держатели документа:
Siberian Federal University, Krasnoyarsk, Russian Federation
Institute of Biophysics SB RAS Federal Research Center'Krasnoyarsk Science Center SB RAS’, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Denisov, I.; Lukyanenko, K.; Yakimov, A.; Kukhtevich, I.; Esimbekova, E.; Belobrov, P.

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