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РУБ Biochemistry & Molecular Biology + Biophysics + Chemistry, Physical

Аннотация: Active hydromedusan and ctenophore Ca2+-regulated photoproteins form complexes consisting of apoprotein and strongly non-covalently bound 2-hydroperoxycoelenterazine (an oxygenated intermediate of coelenterazine). Whereas the absorption maximum of hydromedusan photoproteins is at 460-470 nm, ctenophore photoproteins absorb at 437 nm. Finding out a physical reason for this blue shift is the main objective of this work, and, to achieve it, the whole structure of the protein-substrate complex was optimized using a linear scaling quantum-mechanical method. Electronic excitations pertinent to the spectra of the 2-hydroperoxy adduct of coelenterazine were simulated with time-dependent density functional theory. The dihedral angle of 60 degrees of the 6-(p-hydroxy)-phenyl group relative to the imidazopyrazinone core of 2-hydroperoxycoelenterazine molecule was found to be the key factor determining the absorption of ctenophore photoproteins at 437 nm. The residues relevant to binding of the substrate and its adopting the particular rotation were also identified.

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Держатели документа:
Fed Res Ctr Krasnoyarsk Sci Ctr SB RAS, Kirensky Inst Phys SB RAS, Akademgorodok 50-38, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Svobodny 79 Pr, Krasnoyarsk 660041, Russia.
Natl Res Tomsk State Univ, Lenin Ave 36, Tomsk 634050, Russia.
Fed Res Ctr Krasnoyarsk Sci Ctr SB RAS, Photobiol Lab, Inst Biophys SB RAS, Akademgorodok 50-50, Krasnoyarsk 660036, Russia.
Kyungpook Natl Univ, 80 Daehakro, Daegu 41566, South Korea.
Natl Inst Adv Ind Sci & Technol, Res Ctr Computat Design Adv Funct Mat CD FMat, Cent 2,Umezono 1-1-1, Tsukuba, Ibaraki 3058568, Japan.

Доп.точки доступа:
Tomilin, Felix N.; Rogova, Anastasia V.; Burakova, Ludmila P.; Tchaikovskaya, Olga N.; Avramov, Pavel V.; Fedorov, Dmitri G.; Vysotski, Eugene S.; Burakova, Lyudmila; Vysotski, Eugene; Anastasia, Rogova; Tomilin, Felix; RFBRRussian Foundation for Basic Research (RFBR) [20-04-00085]; NSFCNational Natural Science Foundation of China (NSFC) [19-54-53004]; Russian Ministry of Science and EducationMinistry of Education and Science, Russian Federation [0721-2020-0033]

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Unusual shift in the visible absorption spectrum of an active ctenophore photoprotein elucidated by time-dependent density functional theory / F. N. Tomilin, A. V. Rogova, L. P. Burakova [et al.] // Photochem. Photobiol. Sci. - 2021. - Vol. 20, Is. 4. - P559-570, DOI 10.1007/s43630-021-00039-5 . - ISSN 1474-905X
Кл.слова (ненормированные):
Absorption spectra -- Absorption spectroscopy -- Blue shift -- Dihedral angle -- Substrates -- Absorption maxima -- Covalently bound -- Electronic excitation -- Linear scaling -- Mechanical methods -- Substrate complexes -- Time dependent density functional theory -- Visible absorption spectra -- Density functional theory
Аннотация: Active hydromedusan and ctenophore Ca2+-regulated photoproteins form complexes consisting of apoprotein and strongly non-covalently bound 2-hydroperoxycoelenterazine (an oxygenated intermediate of coelenterazine). Whereas the absorption maximum of hydromedusan photoproteins is at 460–470 nm, ctenophore photoproteins absorb at 437 nm. Finding out a physical reason for this blue shift is the main objective of this work, and, to achieve it, the whole structure of the protein–substrate complex was optimized using a linear scaling quantum–mechanical method. Electronic excitations pertinent to the spectra of the 2-hydroperoxy adduct of coelenterazine were simulated with time-dependent density functional theory. The dihedral angle of 60° of the 6-(p-hydroxy)-phenyl group relative to the imidazopyrazinone core of 2-hydroperoxycoelenterazine molecule was found to be the key factor determining the absorption of ctenophore photoproteins at 437 nm. The residues relevant to binding of the substrate and its adopting the particular rotation were also identified. © 2021, The Author(s), under exclusive licence to European Photochemistry Association,European Society for Photobiology.

Scopus
Держатели документа:
Kirensky Institute of Physics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Akademgorodok 50/38, Krasnoyarsk, 660036, Russian Federation
Siberian Federal University, Svobodny 79 pr., Krasnoyarsk, 660041, Russian Federation
National Research Tomsk State University, Lenin Avenue 36, Tomsk, 634050, Russian Federation
Photobiology Laboratory, Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Akademgorodok 50/50, Krasnoyarsk, 660036, Russian Federation
Kyungpook National University, 80 Daehakro, Bukgu, Daegu, 41566, South Korea
Research Center for Computational Design of Advanced Functional Materials (CD-FMat), National Institute of Advanced Industrial Science and Technology (AIST), Central 2, Umezono 1-1-1, Tsukuba, 305-8568, Japan

Доп.точки доступа:
Tomilin, F. N.; Rogova, A. V.; Burakova, L. P.; Tchaikovskaya, O. N.; Avramov, P. V.; Fedorov, D. G.; Vysotski, E. S.

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Unique diversity of radioactive particles found in the Yenisei River floodplain / A. Bolsunovsky [et al.] // Sci Rep. - 2017. - Vol. 7. - Ст. 11132, DOI 10.1038/s41598-017-11557-7. - Cited References:22. - The authors are grateful to researchers of the Institute of Biophysics FRC KSC SB RAS (Krasnoyarsk, Russia) and the Institute of Geology and Mineralogy SB RAS (Novosibirsk, Russia) for their assistance in isolation and analysis of radioactive particles. Part of the work is also supported by the Research Council of Norway through its Centres of Excellence funding scheme, project number 223268/F50. Investigations of the particles were partially supported by IAEA (Project 17941). . - ISSN 2045-2322

РУБ Multidisciplinary Sciences
Рубрики:
CONTAINING CONTROL RODS
   TRANSURANIC ELEMENTS
   BOTTOM SEDIMENTS
   HOT
Аннотация: The long-term operation of three reactors and the radiochemical plant of the Mining-and-Chemical Combine (MCC), Russia's largest producer of weapons-grade plutonium, has resulted in radioactive contamination of the Yenisei River floodplain. From 1995 to 2016, we found more than 200 radioactive particles (RP) in the Yenisei floodplain, downstream of the MCC. Analytical characterization showed that most of the RP were fuel particles, which were carried into the river after incidents at the MCC reactors. Having compared the Cs-137/Cs-134 ratios in the particles, we determined three time intervals when the RP were formed. The plutonium isotope ratios (Pu-238/Pu-239,Pu-240) vary substantially between the particles and indicate several different source terms. In addition to fuel RP, we found particles that only contained activation products (Co-60 or europium isotopes). SEM and gamma-spectrometry showed that the cobalt particles could have originated from the corrosion of the reactor coolant system and the europium particles -from the damaged compensating rods. No europium particles have been found anywhere else in the world. The presence of RP from different sources (fuel, cobalt, and europium particles) in the Yenisei River floodplain makes this region a unique site for studying environmental effects of the particles. These RP represent point sources of radioecological significance.

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Держатели документа:
FRC Krasnoyarsk Sci Ctr SB RAS, Inst Biophys SB RAS, Krasnoyarsk 660036, Russia.
Russian Acad Sci, Inst Geol & Mineral SB, Novosibirsk 630090, Russia.
Norwegian Univ Life Sci, Ctr Environm Radioact, As, Norway.

Доп.точки доступа:
Bolsunovsky, Alexander; Melgunov, Mikhail; Chuguevskii, Alexey; Lind, Ole Christian; Salbu, Brit; Research Council of Norway through its Centres of Excellence funding scheme [223268/F50]; IAEA [17941]

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Understanding the mechanisms of blooming of phytoplankton in Lake Shira, a saline lake in Siberia (the Republic of Khakasia) / A. G. Degermendzhy, R. D. Gulati // Aquatic Ecology. - 2002. - Vol. 36, Is. 2. - P331-340 . - ISSN 1386-2588
Кл.слова (ненормированные):
Carbon budget -- Cyanobacteria -- Heterotrophic bacteria -- Hydrogen sulphide -- Mathematical models of stratification -- Meromictic lakes -- Microbial loop -- Stratification -- Trophic scheme -- algal bloom -- ecosystem modeling -- limiting factor -- nutrient availability -- phytoplankton -- saline lake -- trophic interaction -- Russian Federation -- algae -- Bacteria (microorganisms) -- Cyanobacteria -- Lyngbya -- Lyngbya contorta
Аннотация: The paper summarises the results of a three-year research study (European Union Grant: INTAS 97-0519) aimed at investigating the planktonic populations and trophic organization of the Lake Shira ecosystem - a saline lake in Khakasia, Siberia. The lake exhibits a stable summer-autumn stratification of the chemical-biological components. The mechanisms responsible for the 'blooming' of phytoplankton in the deeper layers were investigated in greater detail, using data from both field and laboratory experiments. The spectra of nutrition were examined to estimate the relationships between the specific growth rates of the hydrobionts and the influence of the limiting factors: light, nutrients. The observed heterotrophic capability of a metalimnetic phytoplankton population might help explain the development in the deeper waters of Lyngbya contorta. The scheme of trophic interactions was put up, based on the assessment of the carbon pools and carbon flows in the pelagic zone of the lake. A mathematical model of the vertical structure of the lake's plankton populations was constructed, using the ecosystem description and data of vertical turbulent diffusion. The role of light and nutrient limitations and grazing mortality in forming the vertical inhomogeneities, particularly in lowering the depth of the maximal cyanobacterial biomass, has been demonstrated. The theoretical curves for the stratification of chemical and biological parameters have been brought in conformity with the field observations, e.g. for the different patterns of the peaks, and for the biomass maxima of cyanobacteria, purple and green sulphur bacteria, oxygen, and hydrogen sulphide. The calculations revealed that for an adequate assessment of the parameters for the hydrogen sulphide zone it is necessary to introduce flows of allochthonous organic matter. Based on the form of the sulphur distribution curve, the allochthonous input of organic matter and the inflow of hydrogen sulphide from the bottom have been theoretically discriminated for the first time. It has also been ascertained that irrespective of the depth the allochthonous substances limiting bacterial growth, the bacteria are uniformly distributed over depth and can serve as an indicator of the presence of limitation (the effect of autostabilisation in space). Of indisputable interest to limnology are the specific methods developed for understanding the functioning of Lake Shira ecosystem. These include the autostabilisation of the limiting factors, the on-the-spot fluorescent method of determining the three classes of microalgae, the algal mixotrophy and the planktonic population interactions and feedbacks, and development of a more sensitive, bioluminescent method for mapping the nonhomogeneities. Owing to a balanced combination of classical approaches (field observations, in situ data on production-decomposition) and the more recent ones (satellite monitoring, biophysical methods of estimating interactions of populations, mathematical models based on the field and experimental data), many of the structural-function relationships in the ecosystem can now be explained, and the models can provide 'mutual control and mutual agreement' between the data collected using different approaches.

Scopus
Держатели документа:
Institute of Biophysics SB RAS, 660036 Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Degermendzhy, A.G.; Gulati, R.D.

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Unanimous Model for Describing the Fast Bioluminescence Kinetics of Ca2+-regulated Photoproteins of Different Organisms / E. V. Eremeeva [et al.] // Photochem. Photobiol. - 2017. - Vol. 93, Is. 2. - P495-502, DOI 10.1111/php.12664. - Cited References:55. - This work was supported by RFBR grant 14-04-31092 and the state budget allocated to the fundamental research at the Russian Academy of Sciences (projects 01201351504 and 01201351502). . - ISSN 0031-8655. - ISSN 1751-1097

РУБ Biochemistry & Molecular Biology + Biophysics
Рубрики:
GREEN-FLUORESCENT PROTEIN
AEQUORIN BIOLUMINESCENCE
SEQUENCE-ANALYSIS
Аннотация: Upon binding their metal ion cofactors, Ca2+-regulated photoproteins display a rapid increase of light signal, which reaches its peak within milliseconds. In the present study, we investigate bioluminescence kinetics of the entire photoprotein family. All five recombinant hydromedusan Ca2+-regulated photoproteinsaequorin from Aequorea victoria, clytin from Clytia gregaria, mitrocomin from Mitrocoma cellularia and obelins from Obelia longissima and Obelia geniculatademonstrate the same bioluminescent kinetics pattern. Based on these findings, for the first time we propose a unanimous kinetic model describing the bioluminescence mechanism of Ca2+-regulated photoproteins.

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Держатели документа:
Krasnoyarsk Sci Ctr SB RAS, Inst Biophys SB RAS, Fed Res Ctr, Photobiol Lab, Krasnoyarsk, Russia.
Krasnoyarsk Sci Ctr SB RAS, Inst Biophys SB RAS, Fed Res Ctr, Theoret Biophys Lab, Krasnoyarsk, Russia.
Wageningen Univ & Res, Biochem Lab, Wageningen, Netherlands.

Доп.точки доступа:
Eremeeva, Elena V.; Bartsev, Sergey I.; van Berkel, Willem J. H.; Vysotski, Eugene S.; RFBR [14-04-31092]; Russian Academy of Sciences [01201351504, 01201351502]

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Ultraviolet fluorescence of coelenteramide and coelenteramide-containing fluorescent proteins. Experimental and theoretical study / R. R. Alieva [et al.] // J. Photochem. Photobiol. B Biol. - 2016. - Vol. 162. - P318-323, DOI 10.1016/j.jphotobiol.2016.07.004 . - ISSN 1011-1344
Кл.слова (ненормированные):
Aequorin -- B3LYP -- Coelenteramide -- Discharged photoproteins -- Excitation energy -- Fluorescence -- Fluorescent protein -- Obelin
Аннотация: Coelenteramide-containing fluorescent proteins are products of bioluminescent reactions of marine coelenterates. They are called ‘discharged photoproteins’. Their light-induced fluorescence spectra are variable, depending considerably on external conditions. Current work studies a dependence of light-induced fluorescence spectra of discharged photoproteins obelin, aequorin, and clytin on excitation energy. It was demonstrated that photoexcitation to the upper electron-excited states (260–300 nm) of the discharged photoproteins initiates a fluorescence peak in the near UV region, in addition to the blue-green emission. To characterize the UV fluorescence, the light-induced fluorescence spectra of coelenteramide (CLM), fluorophore of the discharged photoproteins, were studied in methanol solution. Similar to photoproteins, the CLM spectra depended on photoexcitation energy; the additional peak (330 nm) in the near UV region was observed in CLM fluorescence at higher excitation energy (260–300 nm). Quantum chemical calculations by time depending method with B3LYP/cc-pVDZ showed that the conjugated pyrazine-phenolic fragment and benzene moiety of CLM molecule are responsible for the additional UV fluorescence peak. Quantum yields of CLM fluorescence in methanol were 0.028 ± 0.005 at 270–340 nm photoexcitation. A conclusion was made that the UV emission of CLM might contribute to the UV fluorescence of the discharged photoproteins. The study develops knowledge on internal energy transfer in biological structures – complexes of proteins with low-weight aromatic molecules. © 2016 Elsevier B.V.

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Держатели документа:
Institute of Biophysics SB RAS, Akademgorodok 50/50, Krasnoyarsk, Russian Federation
Institute of Physics SB RAS, Akademgorodok 50/38, Krasnoyarsk, Russian Federation
Siberian Federal University, Svobodny Prospect 79, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Alieva, R. R.; Tomilin, F. N.; Kuzubov, A. A.; Ovchinnikov, S. G.; Kudryasheva, N. S.

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Ultrafast fluorescence relaxation spectroscopy of 6,7-dimethyl-(8-ribityl)-lumazine and riboflavin, free and bound to antenna proteins from bioluminescent bacteria [Text] / V. N. Petushkov [et al.] // J. Phys. Chem. B. - 2003. - Vol. 107, Is. 39. - P. 10934-10939, DOI 10.1021/jp034266e. - Cited References: 52 . - ISSN 1520-6106

РУБ Chemistry, Physical
Рубрики:
TIME-RESOLVED FLUORESCENCE
   VIBRIO-FISCHERI Y1
   FEMTOSECOND SOLVATION DYNAMICS
   FLAVIN ADENINE-DINUCLEOTIDE
   PHOTOBACTERIUM-LEIOGNATHI
   BIOLOGICAL WATER
   SOLVENT DYNAMICS
   DIELECTRIC-RELAXATION
   MOLECULAR-DYNAMICS
   TRYPTOPHAN
Аннотация: The solvation dynamics of interesting bioluminescent chromophores have been determined, using subpicosecond and wavelength-resolved fluorescence spectroscopy, in combination with global analysis of the multidimensional data sets. The systems investigated comprise the free ligands 6,7-dimethyl-(8-ribityl)-lumazine (lumazine) and riboflavin in an aqueous buffer and both ligands when noncovalently bound to two bacterial bioluminescent antenna proteins: lumazine protein (from Photobacterium leiognathi) and the blue fluorescent protein (from Vibrio fischeri Y1). Fluorescence spectral relaxation of the free ligands is complete within a few picoseconds. Subsequently, the fluorescence intensity increases by similar to7% on a time scale of 15-30 ps. Fluorescence spectral relaxation of the protein-bound ligands is largely complete within 1 ps but reveals a small red shift with a minor, but distinctly longer, relaxation time than that of the free ligands, which is tentatively assigned to the relaxation of protein-bound water in the vicinity of the excited chromophore.

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Держатели документа:
Univ Wageningen & Res Ctr, Biochem & Biophys Lab, MicroSpect Ctr, NL-6703 HA Wageningen, Netherlands
Vrije Univ Amsterdam, Fac Sci & Engn, Dept Phys & Astron, NL-1081 HV Amsterdam, Netherlands
Univ Georgia, Dept Biochem & Mol Biol, Athens, GA 30602 USA
Vrije Univ Amsterdam, Fac Earth & Life Sci, Dept Biol Struct, NL-1081 HV Amsterdam, Netherlands
Russian Acad Sci, Inst Biophys, Krasnoyarsk 660036, Russia
ИБФ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Petushkov, V.N.; van Stokkum, IHM; Gobets, B...; van Mourik, F...; Lee, J...; van Grondelle, R...; Visser, AJWG

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Ultrafast fluorescence relaxation spectroscopy of 6,7-dimethyl-(8-ribityl)-lumazine and riboflavin, free and bound to antenna proteins from bioluminescent bacteria / V. N. Petushkov [et al.] // Journal of Physical Chemistry B. - 2003. - Vol. 107, Is. 39. - P10934-10939 . - ISSN 1520-6106
Кл.слова (ненормированные):
Bacteria -- Bioluminescence -- Chemical relaxation -- Chromophores -- Dielectric properties -- Proteins -- Solvents -- Bioluminescent bacteria -- Dimethyl ribityl lumazine -- Photobacterium leiognathi -- Riboflavin -- Ultrafast fluorescence relaxation spectroscopy -- Fluorescence
Аннотация: The solvation dynamics of interesting bioluminescent chromophores have been determined, using subpicosecond and wavelength-resolved fluorescence spectroscopy, in combination with global analysis of the multidimensional data sets. The systems investigated comprise the free ligands 6,7-dimethyl-(8-ribityl)-lumazine (lumazine) and riboflavin in an aqueous buffer and both ligands when noncovalently bound to two bacterial bioluminescent antenna proteins: lumazine protein (from Photobacterium leiognathi) and the blue fluorescent protein (from Vibrio fischeri Y1). Fluorescence spectral relaxation of the free ligands is complete within a few picoseconds. Subsequently, the fluorescence intensity increases by ?7% on a time scale of 15-30 ps. Fluorescence spectral relaxation of the protein-bound ligands is largely complete within 1 ps but reveals a small red shift with a minor, but distinctly longer, relaxation time than that of the free ligands, which is tentatively assigned to the relaxation of protein-bound water in the vicinity of the excited chromophore.

Scopus
Держатели документа:
MicroSpectroscopy Centre, Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703 HA Wageningen, Netherlands
Department of Physics and Astronomy, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081 HV Amsterdam, Netherlands
Dept. of Biochem. and Molec. Biology, University of Georgia, Athens, GA 30602, United States
Department of Structural Biology, Faculty of Earth and Life Sciences, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, Netherlands
Institute of Biophysics, Academy of Sciences of Russia, Krasnoyarsk 660036, Russian Federation
IPMC, Universite de Lausanne, CH 1015 Lausanne, Switzerland : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Petushkov, V.N.; Van Stokkum, I.H.M.; Gobets, B.; Van Mourik, F.; Lee, J.; Van Grondelle, R.; Visser, A.J.W.G.

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Two new types of bioluminescent systems of soil enchytraeids (Annelida:Clitellata:Oligochaeta:Enchytraeidae) / V. N. Petushkov, N. S. Rodionova // Doklady Akademii Nauk. - 2005. - Vol. 401, Is. 2. - С. 263-266 . - ISSN 0869-5652
Кл.слова (ненормированные):
Analysis -- Luminescence -- Models -- Soils -- Bioluminescent systems -- Oligochaeta earth-worm -- Biology
Аннотация: For the first time comparative data on localization, structural-functional organization, optimal functioning conditions for two bioluminescent systems of soil enchytraeids Fridericia heliota and Henlea sp. are given. Strong difference of these systems from each other and from all known among Oligochaeta class is shown. The analysis allows stating the discovery of two new systems of bioluminescent systems of enchytraeids, and accounting peroxide-dependent system of Diplocardia longa megascolecid, establishing multiplicity of luminescent mechanisms for Oligochaeta earth-worm.

Scopus
Держатели документа:
Inst. Biofiziki SO RAN, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Petushkov, V.N.; Rodionova, N.S.

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10.

Trends of chlorophyll concentration in the surface layer of the northern and central Atlantic, a satellite data-based study [Text] / A. . Shevyrnogov, G. . Vysotskaya, E. . Shevyrnogov ; ed. JL Fellous [et al.] // EARTH'S ATMOSPHERE, OCEAN AND SURFACE STUDIES. Ser. ADVANCES IN SPACE RESEARCH : PERGAMON-ELSEVIER SCIENCE LTD, 2002. - Vol. 30: A0 1, A0 4-A0 5, A3 1, C1 1 and C2 6 Symposia of the COSPAR Scientific Commissions A and C held at the 33rd COSPAR Scientific Assembly (JUL , 2000, WARSAW, POLAND), Is. 11. - P. 2535-2540, DOI 10.1016/S0273-1177(02)80332-5. - Cited References: 7 . - ISBN 0273-1177

РУБ Engineering, Aerospace + Astronomy & Astrophysics + Geosciences, Multidisciplinary + Meteorology & Atmospheric Sciences

Аннотация: The new data on anomalies in seasonal dynamics of chlorophyll concentration in the ocean have altered the approach to the analysis of long-term trends of phytopigments in the surface layer of the ocean. Zones have been found in which at various times there was a many-fold increase in chlorophyll concentration versus its usual level. These changes are local in time and space. If anomalies in the. long-term tendencies in the change of phytopigment surface distribution in the ocean are ignored in the analysis, the resulting picture will inadequately reflect the real processes. The work presents the results of the analysis of long-term trends of chlorophyll concentration on the basis of the CZCS satellite data in the Atlantic Ocean. The results are given as maps representing different variants of trends. The data obtained can be used to analyze the consequences of long-term changes of climate and changes in the interaction between the atmosphere and the ocean. (C) 2002 COSPAR. Published by Elsevier Science Ltd. All rights reserved.

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Держатели документа:
RAS, SB, Inst Biophys, Krasnoyarsk, Russia
RAS, SB, Inst Computat Modelling, Krasnoyarsk, Russia
ИБФ СО РАН
ИВМ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Shevyrnogov, A...; Vysotskaya, G...; Shevyrnogov, E...; Fellous, JL \ed.\; LeMarshall, JF \ed.\; Choudhury, BJ \ed.\; Menenti, M \ed.\; Paxton, LJ \ed.\; Paxto, LJ \ed.\

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11.

Trends of chlorophyll concentration in the surface layer of the Northern and Central Atlantic, a satellite data-based study / A. Shevyrnogov, G. Vysotskaya, E. Shevyrnogov // Advances in Space Research. - 2002. - Vol. 30, Is. 11. - P2535-2540, DOI 10.1016/S0273-1177(02)80332-5 . - ISSN 0273-1177
Кл.слова (ненормированные):
Chlorophyll -- Climatology -- Data reduction -- Ocean engineering -- Satellites -- Surface properties -- Chlorophyll concentration -- Space research -- chlorophyll -- pigment -- remote sensing -- seasonality -- surface water -- Atlantic Ocean
Аннотация: The new data on anomalies in seasonal dynamics of chlorophyll concentration in the ocean have altered the approach to the analysis of long-term trends of phytopigments in the surface layer of the ocean. Zones have been found in which at various times there was a many-fold increase in chlorophyll concentration versus its usual level. These changes are local in time and space. If anomalies in the long-term tendencies in the change of phytopigment surface distribution in the ocean are ignored in the analysis, the resulting picture will inadequately reflect the real processes. The work presents the results of the analysis of long-term trends of chlorophyll concentration on the basis of the CZCS satellite data in the Atlantic Ocean. The results are given as maps representing different variants of trends. The data obtained can be used to analyze the consequences of long-term changes of climate and changes in the interaction between the atmosphere and the ocean. В©2002 COSPAR. Published by Elsevier Science Ltd. All rights reserved.

Scopus
Держатели документа:
Institute of Biophysics of SB RAS, Krasnoyarsk, Russian Federation
Inst. of Comp. Modelling of SB RAS, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Shevyrnogov, A.; Vysotskaya, G.; Shevyrnogov, E.

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12.

Trends in microevolution of microbial populations in open systems / A. V. Brilkov [et al.] // Doklady Biochemistry and Biophysics. - 2005. - Vol. 404, Is. 1-6. - P349-352, DOI 10.1007/s10628-005-0111-x . - ISSN 1607-6729
Кл.слова (ненормированные):
article -- bacterial phenomena and functions -- bacterium -- biological model -- culture technique -- Escherichia coli -- evolution -- genetics -- growth, development and aging -- mathematics -- methodology -- mutation -- nanotechnology -- pH -- physiology -- population dynamics -- time -- Bacteria -- Bacterial Physiology -- Cell Culture Techniques -- Escherichia coli -- Evolution -- Hydrogen-Ion Concentration -- Mathematics -- Models, Biological -- Mutation -- Nanotechnology -- Population Dynamics -- Time Factors

Scopus
Держатели документа:
Krasnoyarsk State University, Krasnoyarsk, 660062, Russian Federation
Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Brilkov, A.V.; Loginov, I.A.; Morozova, E.V.; Pechurkin, N.S.

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13.

Transfer efficiency of carbon, nutrients, and polyunsaturated fatty acids in planktonic food webs under different environmental conditions / M. Karpowicz, I. Feniova, M. I. Gladyshev [et al.] // Ecol. Evol. - 2021, DOI 10.1002/ece3.7651. - Cited References:62. - This research was supported by the Polish National Science Centre (2016/21/B/NZ8/00434). The research was also supported by Federal Tasks for Institute of Biophysics SB RAS No. 51.1.1 and Federal Tasks for Siberian Federal University No. FSRG-2020-0019. The authors are thankful to Joanna Kozowska for her help in the collection of samples. . - Article in press. - ISSN 2045-7758

РУБ Ecology + Evolutionary Biology
Рубрики:
PHOSPHORUS STOICHIOMETRY
   LIGHT-INTENSITY
   ZOOPLANKTON
   TEMPERATURE
Кл.слова (ненормированные):
biogeochemical cycle -- dystrophication -- essential substances -- eutrophication -- food quality -- phytoplankton -- zooplankton
Аннотация: The trophic transfer efficiency (TTE) is an important indicator of ecosystem functioning. However, TTE data from freshwater food webs are ambiguous due to differences in time scales and methods. We investigated the transfer of essential substances (carbon, nutrients, and polyunsaturated fatty acids) through plankton communities in 30 Polish lakes with different trophic status in the middle of summer. The results of our study revealed that different essential substances were transferred from phytoplankton to zooplankton with varying efficiencies. The average TTE of C, N, P, and the sum of omega-3 PUFA were 6.55%, 9.82%, 15.82%, and 20.90%, respectively. Our results also show a large mismatch between the elemental and biochemical compositions of zooplankton and their food during the peak of the summer stagnation, which may further promote the accumulation of essential substances. There were also large differences in TTEs between trophic conditions, with the highest efficiencies in oligotrophic lakes and the lowest in dystrophic and eutrophic lakes. Therefore, our study indicates that disturbances like eutrophication and dystrophication similarly decrease the TTE of essential substances between phytoplankton and zooplankton in freshwater food webs.

WOS
Держатели документа:
Univ Bialystok, Dept Hydrobiol, Fac Biol, Ciolkowskiego 1J, PL-15245 Bialystok, Poland.
Russian Acad Sci, Inst Ecol & Evolut, Moscow, Russia.
Russian Acad Sci, Krasnoyarsk Sci Ctr, Siberian Branch, Inst Biophys,Fed Res Ctr, Krasnoyarsk, Russia.
Siberian Fed Univ, Krasnoyarsk, Russia.
Polish Acad Sci, Nencki Inst Expt Biol, Res Stn Mikolajki, Warsaw, Poland.
Oklahoma State Univ, Dept Integrat Biol, Stillwater, OK 74078 USA.

Доп.точки доступа:
Karpowicz, Maciej; Feniova, Irina; Gladyshev, Michail I.; Ejsmont-Karabin, Jolanta; Gorniak, Andrzej; Sushchik, Nadezhda N.; Anishchenko, Olesya V.; Dzialowski, Andrew R.; Polish National Science Centre [2016/21/B/NZ8/00434]; Federal Tasks for Institute of Biophysics SB RAS [51.1.1]; Federal Tasks for Siberian Federal University [FSRG-2020-0019]

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14.

Transfer efficiency of carbon, nutrients, and polyunsaturated fatty acids in planktonic food webs under different environmental conditions / M. Karpowicz, I. Feniova, M. I. Gladyshev [et al.] // Ecology and Evolution. - 2021, DOI 10.1002/ece3.7651 . - Article in press. - ISSN 2045-7758
Кл.слова (ненормированные):
biogeochemical cycle -- dystrophication -- essential substances -- eutrophication -- food quality -- phytoplankton -- zooplankton
Аннотация: The trophic transfer efficiency (TTE) is an important indicator of ecosystem functioning. However, TTE data from freshwater food webs are ambiguous due to differences in time scales and methods. We investigated the transfer of essential substances (carbon, nutrients, and polyunsaturated fatty acids) through plankton communities in 30 Polish lakes with different trophic status in the middle of summer. The results of our study revealed that different essential substances were transferred from phytoplankton to zooplankton with varying efficiencies. The average TTE of C, N, P, and the sum of ?-3 PUFA were 6.55%, 9.82%, 15.82%, and 20.90%, respectively. Our results also show a large mismatch between the elemental and biochemical compositions of zooplankton and their food during the peak of the summer stagnation, which may further promote the accumulation of essential substances. There were also large differences in TTEs between trophic conditions, with the highest efficiencies in oligotrophic lakes and the lowest in dystrophic and eutrophic lakes. Therefore, our study indicates that disturbances like eutrophication and dystrophication similarly decrease the TTE of essential substances between phytoplankton and zooplankton in freshwater food webs. © 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.

Scopus
Держатели документа:
Department of Hydrobiology, Faculty of Biology, University of Bialystok, Bialystok, Poland
Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russian Federation
Institute of Biophysics of Federal Research Centre, Krasnoyarsk Science Centre of Siberian Branch of Russian Academy of Sciences, Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation
Research Station in Mikolajki, Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland
Department of Integrative Biology, Oklahoma State University, Stillwater, OK, United States

Доп.точки доступа:
Karpowicz, M.; Feniova, I.; Gladyshev, M. I.; Ejsmont-Karabin, J.; Gorniak, A.; Sushchik, N. N.; Anishchenko, O. V.; Dzialowski, A. R.

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15.

Tolerance of LSS plant component to elevated temperatures [Text] / S. A. Ushakova, A. A. Tikhomirov // Acta Astronaut. - 2002. - Vol. 50, Is. 12. - P. 759-764, DOI 10.1016/S0094-5765(02)00010-3. - Cited References: 10 . - ISSN 0094-5765

РУБ Engineering, Aerospace

Аннотация: Stability of LSS based on biological regeneration of water, air and food subject to damaging factors is largely dependent on the behavior of the photosynthesizing component represented, mainly, by higher plants. The purpose of this study is to evaluate the tolerance of uneven-aged wheat and radish cenoses to temperature effects different in time and value. Estimation of thermal tolerance of plants demonstrated that exposure for 20 h to the temperature increasing to 45degreesC brought about irreversible damage both in photosynthetic processes (up to 80% of initial value) and the processes of growth and development. Kinetics of visible photosynthesis during exposure to elevated temperatures can be used to evaluate critical exposure time within the range of which the damage of metabolic processes is reversible. With varying light intensity and air temperature it is possible to find a time period admissible for the plants to stay under adverse conditions without considerable damage of metabolic processes. (C) 2002 Elsevier Science Ltd. All rights reserved.

WOS
Держатели документа:
Russian Acad Sci, Inst Biophys, Siberian Branch, Krasnoyarsk 660036, Russia
ИБФ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Ushakova, S.A.; Tikhomirov, A.A.

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16.

Tolerance of LSS plant component to elevated temperatures / S. A. Ushakova, A. A. Tikhomirov // Acta Astronautica. - 2002. - Vol. 50, Is. 12. - P759-764, DOI 10.1016/S0094-5765(02)00010-3 . - ISSN 0094-5765
Кл.слова (ненормированные):
Metabolism -- Photosynthesis -- Rate constants -- Thermal effects -- Thermoanalysis -- Thermal tolerance -- Life support systems (spacecraft) -- carbon dioxide -- adaptation -- article -- Brassicaceae -- comparative study -- heat -- instrumentation -- light -- metabolism -- microclimate -- photosynthesis -- physiology -- plant physiology -- wheat -- Adaptation, Physiological -- Brassicaceae -- Carbon Dioxide -- Ecological Systems, Closed -- Heat -- Life Support Systems -- Light -- Photosynthesis -- Plant Physiology -- Triticum
Аннотация: Stability of LSS based on biological regeneration of water, air and food subject to damaging factors is largely dependent on the behavior of the photosynthesizing component represented, mainly, by higher plants. The purpose of this study is to evaluate the tolerance of uneven-aged wheat and radish cenoses to temperature effects different in time and value. Estimation of thermal tolerance of plants demonstrated that exposure for 20 h to the temperature increasing to 45В°C brought about irreversible damage both in photosynthetic processes (up to 80% of initial value) and the processes of growth and development. Kinetics of visible photosynthesis during exposure to elevated temperatures can be used to evaluate critical exposure time within the range of which the damage of metabolic processes is reversible. With varying light intensity and air temperature it is possible to find a time period admissible for the plants to stay under adverse conditions without considerable damage of metabolic processes. В© 2002 Elsevier Science Ltd. All rights reserved.

Scopus
Держатели документа:
Institute of Biophysics (Russian Academy of Sciences, Siberian Branch) Academgorodok, 660036 Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Ushakova, S.A.; Tikhomirov, A.A.

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17.

Time-space structure and variability of surface temperature frontal zones in the ocean (based on AVHRR satellite data) / A. V. Kartushinsky // Advances in Space Research. - 2000. - Vol. 25, Is. 5. - P1107-1110, DOI 10.1016/S0273-1177(99)00871-6 . - ISSN 0273-1177
Кл.слова (ненормированные):
AVHRR -- frontal feature -- global ocean -- sea surface temperature -- spatiotemporal analysis
Аннотация: Satellite monitoring of large-scale ocean fields allows collection and analyse of information on dynamics processes in various areas of the ocean. Investigation of the World Ocean processes involves the determination of space-time changes of sea surface temperature (SST). Water temperature of the ocean is one of major characteristics of surface water masses. Distribution of water temperature depends not only on regional climate peculiarities but also on formation of high gradient temperature zones. These zones emerge due to interaction of different current structure, circulation and eddies. Some more important characteristics of such zones are space dimensions and time of existence (lifetime). Space-time scales of the above structure have not been investigated in detail. The aim of the paper is to study space-time changes of the surface temperature frontal zones and frontal partitions in the ocean by AVHRR satellite information.

Scopus
Держатели документа:
Institute of Biophysics (Russian Academy of Sciences, Siberian Branch), Academgorodok, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Kartushinsky, A.V.

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18.

Time-space earth surface gradients for satellite monitoring of ecosystems / A. V. Kartushinsky, N. A. Ogorodov, A. A. Larko // CEUR Workshop Proceedings : CEUR-WS, 2019. - Vol. 2534: 2019 All-Russian Conference ""Spatial Data Processing for Monitoring of Natural and Anthropogenic Processes"", SDM 2019 (26 August 2019 through 30 August 2019, ) Conference code: 156641. - P366-370
Кл.слова (ненормированные):
Average seasonal variability -- Ecotone -- Frontal zones -- Gradient fields -- Regional features -- Satellite data -- Spatial averaging -- Synergistic effect -- Aquatic ecosystems -- Data handling -- Earth (planet) -- Satellites -- Ecotone -- Frontal zones -- Gradient fields -- Regional feature -- Satellite data -- Seasonal variability -- Spatial averaging -- Synergistic effect -- Monitoring
Аннотация: The results of Earth surface gradients characteristics calculate based on satellite data are presents. Dynamics structural features of horizontal gradient fields in aquatic objects and land ecosystems by physical, biological parameters are considered. Problems of the parametrization for environment exchanges evaluations with using numerical modeling based on satellite data and software tools are submitted. Spatial-temporal scaling and averaging of gradient components are discussed. Develop improved estimates of Earth surface gradients fields in the different ecosystems is considered. Copyright © 2019 for this paper by its authors. Use permitted under Creative Commons License Attribution 4.0 International (CC BY 4.0).

Scopus
Держатели документа:
Institute of Biophysics SB RAS, Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation
Federal Research Center KSC SB RAS, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Kartushinsky, A. V.; Ogorodov, N. A.; Larko, A. A.

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19.

Time-dependent trends of artificial radionuclides in biota of the Yenisei River (Siberia, Russia) / T. A. Zotina, E. A. Trofimova, D. V. Dementyev // J. Environ. Radioact. - 2019. - Vol. 208-209. - Ст. 106028, DOI 10.1016/j.jenvrad.2019.106028 . - ISSN 0265-931X
Кл.слова (ненормированные):
Apatania crymophila -- Esox lucius -- Eulimnogammarus viridis -- Fontinalis antipyretica -- Leuciscus baicalensis -- Thymallus arcticus -- Fish -- Muscle -- Nuclear reactors -- Plant shutdowns -- Apatania crymophila -- Esox lucius -- Eulimnogammarus viridis -- Fontinalis antipyretica -- Leuciscus baicalensis -- Thymallus arcticus -- Radioisotopes -- Amphipoda -- Apatania crymophila -- Bryophyta -- Esox lucius -- Eulimnogammarus viridis -- Fontinalis antipyretica -- Leuciscus -- Thymallus arcticus -- Trichoptera
Аннотация: We investigated time-dependent trends of artificial radionuclides in aquatic moss, zoobenthos (amphipods and caddisfly larvae), and three abundant wild fish species (Northern pike, Arctic grayling, and Siberian dace) inhabiting the Yenisei River in the vicinity of the radioactive discharge site in 2007–2015, in a period before and after the shutdown of the last nuclear reactor plant at the Mining-and-Chemical Combine (MCC), which occurred in 2010. From our research, we learned that concentrations of short-lived radionuclides, whose discharges to the Yenisei either stopped or declined after the shutdown of the reactor plant at the MCC (24Na, 46Sc,51Cr, 54Mn, 58Co, 59Fe, 60Co, 65Zn, 103Ru, 141,144Ce, 152,154Eu, 239Np), decreased in biota samples as well. The ecological half-life (EHL) of 65Zn (0.4–0.7 y) was similar to the physical half-life of this isotope, the EHLs of 60Co (1.2–2.1 y) and 152Eu (1.8 y) were shorter than the physical half-lives of these isotopes. Concentration of 137Cs did not decrease significantly in biota of the Yenisei after the shutdown of the last reactor plant because the discharges of this radionuclide to the Yenisei continued at the same level. On a longer-term scale (since 1973 and since 1991), concentration of 137Cs in fish muscle had significantly decreased, following the decrease in annual discharges of this radionuclide to the Yenisei, and the EHL of 137Cs was estimated as 6.5–12.8 y. Statistically significant correlation with annual discharges of 137Cs was revealed for the concentration of this radionuclide in grayling (whole bodies and muscle); dace (muscle), and amphipods. Despite their ability to accumulate high concentrations of 137Cs, aquatic moss and caddisfly larvae (analyzed together with their stony casings) were not sensitive to interannual fluctuations in the releases of this radionuclide to the Yenisei. Among the analyzed fish species of the Yenisei, the highest activity concentration of 137Cs was revealed in pike (body and muscle), indicating biomagnification of this radionuclide in the top level of the trophic chain. © 2019 Elsevier Ltd

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WOS
Держатели документа:
Institute of Biophysics, Federal Research Center “Krasnoyarsk Science Center” of the Siberian Branch of the Russian Academy of Sciences, 50/50 Akademgorodok, Krasnoyarsk, 660036, Russian Federation
Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodny av., Krasnoyarsk, 660041, Russian Federation

Доп.точки доступа:
Zotina, T. A.; Trofimova, E. A.; Dementyev, D. V.

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20.

Time course of the spectral brightness of agricultural crops during the vegetation period in Krasnoyarsk krai / A. F. Sid'ko, I. Yu. Pugacheva, A. P. Shevyrnogov // Doklady Biological Sciences. - 2008. - Vol. 419, Is. 1. - P114-117, DOI 10.1134/S0012496608020130 . - ISSN 0012-4966
Кл.слова (ненормированные):
article -- crop -- histology -- light -- metabolism -- plant -- Russian Federation -- season -- spectroscopy -- Crops, Agricultural -- Light -- Plants -- Russia -- Seasons -- Spectrum Analysis

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Sid'ko, A.F.; Pugacheva, I.Yu.; Shevyrnogov, A.P.

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