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Estimation of transfer of technogenic radionuclides in food chains of the Yenisei river / E. A. Trofimova, T. A. Zotina, A. Y. Bolsunovskii // Contemporary Problems of Ecology. - 2012. - Vol. 5, Is. 4. - P365-370, DOI 10.1134/S1995425512040142 . - ISSN 1995-4255
Кл.слова (ненормированные):
burbot -- dace -- grayling -- pike -- water moss -- zoobenthos -- bioaccumulation -- food chain -- gadoid -- gamma ray radiation -- macrophyte -- moss -- radioactive pollution -- radionuclide -- salmonid -- trophic level -- zoobenthos -- Russian Federation -- Yenisei River -- Bryophyta -- Esocidae -- Lota
Аннотация: The efficiency of the transfer of gamma-emitting radionuclides in food chains, including macrophytes, zoobenthos, and bentho- and ichthyophagist fish, was estimated in the radiation-polluted region of the Yenisei river. Significant differences in the efficiency of the transfer of natural and technogenic radionuclides between components of different trophic levels were revealed. Substantial species-related differences in the accumulation of radionuclides in ichthyophagist fish from food were revealed. В© 2012 Pleiades Publishing, Ltd.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch of the Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Trofimova, E.A.; Zotina, T.A.; Bolsunovskii, A.Y.

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Biodegradation of polyhydroxyalkanoates (PHAs) in tropical coastal waters and identification of PHA-degrading bacteria / T. G. Volova [et al.] // Polymer Degradation and Stability. - 2010. - Vol. 95, Is. 12. - P2350-2359, DOI 10.1016/j.polymdegradstab.2010.08.023 . - ISSN 0141-3910
Кл.слова (ненормированные):
Biopolymers in marine environment -- Degradation of polymers -- PHA properties -- PHA-degrading microorganisms -- Polyhydroxyalkanoates, PHA -- 16S rRNA -- 3-hydroxybutyric acid -- Amorphous phase -- Bacillus sp -- Biodegradation rate -- Chemical compositions -- Coastal waters -- Degradation rate -- Degrading bacteria -- Degree of crystallinity -- Enterobacter -- Hydroxyvalerate -- Marine environment -- PHA properties -- PHA-degrading microorganisms -- Polydispersity indices -- Polyhydroxyalkanoates -- Polymer chains -- Preparation technique -- Sole carbon source -- South China Sea -- Viet Nam -- Acids -- Bacteriology -- Biodegradable polymers -- Biodegradation -- Biomolecules -- Biopolymers -- Microorganisms -- Organic polymers -- Polydispersity -- Polymer films -- Polymers -- RNA -- Seawater -- Degradation
Аннотация: Biodegradability patterns of two PHAs: a polymer of 3-hydroxybutyric acid (3-PHB) and a copolymer of 3-hydroxybutyric and 3-hydroxyvaleric acids (3-PHB/3-PHV) containing 11 mol% of hydroxyvalerate, were studied in the tropical marine environment, in the South China Sea (Nha Trang, Vietnam). No significant differences have been observed between degradation rates of 3-PHB and 3-PHB/3-PHV specimens; it has been found that under study conditions, biodegradation is rather influenced by the shape of the polymer item and the preparation technique than by the chemical composition of the polymer. Biodegradation rates of polymer films in seawater have been found to be higher than those of compacted pellets. As 3-PHB and 3-PHB/3-PHV are degraded and the specimens lose their mass, molecular weight of both polymers is decreased, i.e. polymer chains get destroyed. The polydispersity index of the PHAs grows significantly. However, the degree of crystallinity of both PHAs remains unchanged, i.e. the amorphous phase and the crystalline one are equally disintegrated. PHA-degrading microorganisms were isolated using the clear-zone technique, by inoculating the isolates onto mineral agar that contained PHA as sole carbon source. Based on the 16S rRNA analysis, the PHA-degrading strains were identified as Enterobacter sp. (four strains), Bacillus sp. and Gracilibacillus sp.В© 2010 Elsevier Ltd. All rights reserved.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk 660036, Russian Federation
Siberian Federal University, 79 Svobodny av., Krasnoyarsk 660041, Russian Federation
L.V. Kirensky Institute of Physics, Siberian Branch, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk 660036, Russian Federation
A.N. Severtsov Institute of Ecology and Evolution RAS, 33 Leninskij Prospect, Moscow 119071, Russian Federation
Institute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 8 Lavrentiev Ave., Novosibirsk 630090, Russian Federation
Joint Russian-Vietnam Tropical Research and Test Centre, Coastal Branch, 30 Nguyen Thien Thuat, Nha Trang, Viet Nam : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Volova, T.G.; Boyandin, A.N.; Vasiliev, A.D.; Karpov, V.A.; Prudnikova, S.V.; Mishukova, O.V.; Boyarskikh, U.A.; Filipenko, M.L.; Rudnev, V.P.; Ba Xuan, B.; Vit Dung, V.; Gitelson, I.I.

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Biosynthesis of multi-component polyhydroxyalkanoates by the bacterium Wautersia eutropha / T. G. Volova, G. S. Kalacheva, A. Steinbuchel // Macromolecular Symposia. - 2008. - Vol. 269, Is. 1. - P1-7, DOI 10.1002/masy.200850901 . - ISSN 1022-1360
Кл.слова (ненормированные):
Autotrophic and mixotrophic growth -- Multi-component polyhydroxyalkanoates -- Wautersia eutropha -- Bacteriology -- Biochemical engineering -- Biochemistry -- Biopolymers -- Biotechnology -- Carboxylic acids -- Fatty acids -- Ketones -- Monomers -- Polymers -- Autotrophic and mixotrophic growth -- Carbon chains -- Carbon nutritions -- Even numbers -- Growth conditions -- Hydroxybutyrate -- Hydroxyvalerate -- Mixotrophic -- Multi-component polyhydroxyalkanoates -- Odd numbers -- Physico-chemical properties -- Polyhydroxyalkanoates -- Synthesis of -- Wautersia eutropha -- Wild types -- Acids
Аннотация: The study addresses the effect of different conditions of carbon nutrition on synthesis of polyhydroxyalkanoates by the bacterium Wautersia eutropha. In experiments with two wild type strains (H16 and 65786), it has been first found that under mixotrophic growth conditions - Co2 + co-substrate (alkanoic acids) - bacteria can synthesize multi-component PHAs, consisting of short- and medium-chainlength monomers with carbon chains containing 4 to 8 atoms. It has been shown that PHA composition is determined by the type of the co-substrate. Fatty acids with odd number of carbons induce bacteria to synthesize four- and five-component PHAs with hydroxybutyrate, hydroxyvalerate as major monomers and hydroxyhexanoate, hydroxyheptanoate and hydroxyoctanoate as minor, occasionally occurring, ones. Fatty acids with even number of carbons induce synthesis of not only their respective monomers (hydroxyhexanoate and hydroxyoctanoate) but also hydroxyvalerate, making possible synthesis of four-component PHAs, containing hydroxybutyrate and hydroxyhexanoate as major components (up to 18 mol%). A family of short- and medium-chain-length four- and five-component PHAs were synthesized and their physicochemical properties examined. Copyright В© 2008 WILEY-VCH Verlag GmbH & Co. KGaA.

Scopus
Держатели документа:
Institute of Biophysics, SB, RAS, 660036 Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation
Institute of Molecular Microbiology and Biotechnology, Munster, Germany : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Volova, T.G.; Kalacheva, G.S.; Steinbuchel, A.

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Production of EPA and DHA in aquatic ecosystems and their transfer to the land / M. I. Gladyshev, N. N. Sushchik, O. N. Makhutova // Prostaglandins and Other Lipid Mediators. - 2013, DOI 10.1016/j.prostaglandins.2013.03.002 . - ISSN 1098-8823
Кл.слова (ненормированные):
Aquatic ecosystems -- Docosahexaenoic acid -- Eicosapentaenoic acid -- Trophic transfer efficiency
Аннотация: Most omnivorous animals, including humans, have to some degree relied on physiologically important polyunsaturated fatty acids (PUFAs), such as eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) from food. Only some taxa of microalgae, rather than higher plants can synthesize de novo high amounts of EPA and DHA. Once synthesized by microalgae, PUFA are transferred through trophic chain to organisms of higher levels. Thus, aquatic ecosystems play the unique role in the Biosphere as the principal source of EPA and DHA for most omnivorous animals, including inhabitants of terrestrial ecosystems. PUFA are transferred from aquatic to terrestrial ecosystems through riparian predators, drift of carrion and seaweeds, emergence of amphibiotic insects, and water birds. The essential PUFA are transferred through trophic chains with about twice higher efficiency than bulk carbon. Thereby, PUFA are accumulated, rather than diluted in biomass of organisms of higher trophic levels, e.g., in fish. Mankind is faced with a severe deficiency of EPA and DHA in diet. Although additional sources of PUFA supply for humans, such as aquaculture, biotechnology of microorganisms and transgenic terrestrial oil-seed producing plants are developed, natural fish production of aquatic ecosystems will remain one of the main sources of EPA and DHA for humans. Aquatic ecosystems have to be protected from anthropogenic impacts, such as eutrophication, pollution and warming, which reduce PUFA production. В© 2013 Elsevier Inc. All rights reserved.

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Держатели документа:
Institute of Biophysics of Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk 660036, Russia
Siberian Federal University, Svobodny av. 79, Krasnoyarsk 660041, Russia : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Gladyshev, M.I.; Sushchik, N.N.; Makhutova, O.N.

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Efficiency of transfer of essential polyunsaturated fatty acids versus organic carbon from producers to consumers in a eutrophic reservoir / M. I. Gladyshev [et al.] // Oecologia. - 2011. - Vol. 165, Is. 2. - P521-531, DOI 10.1007/s00442-010-1843-6 . - ISSN 0029-8549
Кл.слова (ненормированные):
Phytoplankton -- Production -- PUFA -- Trophic level -- Zooplankton -- carbon -- fresh water -- unsaturated fatty acid -- biomass -- eutrophic environment -- fatty acid -- net primary production -- organic carbon -- paradigm shift -- phytoplankton -- reservoir -- secondary production -- trophic level -- zooplankton -- animal -- article -- eutrophication -- food chain -- functional food -- growth, development and aging -- metabolism -- phytoplankton -- season -- zooplankton -- Animals -- Carbon -- Eutrophication -- Fatty Acids, Unsaturated -- Food Chain -- Fresh Water -- Functional Food -- Phytoplankton -- Seasons -- Zooplankton -- Animalia
Аннотация: One of the central paradigms of ecology is that only about 10% of organic carbon production of one trophic level is incorporated into new biomass of organisms of the next trophic level. Many of energy-yielding compounds of carbon are designated as 'essential', because they cannot be synthesized de novo by consumers and must be obtained with food, while they play important structural and regulatory functions. The question arises: are the essential compounds transferred through trophic chains with the same efficiency as bulk carbon? To answer this question, we measured gross primary production of phytoplankton and secondary production of zooplankton and content of organic carbon and essential polyunsaturated fatty acids of ?-3 family with 18-22 carbon atoms (PUFA) in the biomass of phytoplankton and zooplankton in a small eutrophic reservoir during two summers. Transfer efficiency between the two trophic levels, phytoplankton (producers) and zooplankton (consumers), was calculated as ratio of the primary production versus the secondary (zooplankton) production for both carbon and PUFA. We found that the essential PUFA were transferred from the producers to the primary consumers with about twice higher efficiency than bulk carbon. In contrast, polyunsaturated fatty acids with 16 carbon atoms, which are synthesized exclusively by phytoplankton, but are not essential for animals, had significantly lower transfer efficiency than both bulk carbon, and essential PUFA. Thus, the trophic pyramid concept, which implicitly implies that all the energy-yielding compounds of carbon are transferred from one trophic level to the next with the same efficiency of about on average 10%, should be specified for different carbon compounds. В© 2010 Springer-Verlag.

Scopus
Держатели документа:
Institute of Biophysics of Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk 660036, Russian Federation
Siberian Federal University, Svobodny av. 79, Krasnoyarsk 660041, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Gladyshev, M.I.; Sushchik, N.N.; Anishchenko, O.V.; Makhutova, O.N.; Kolmakov, V.I.; Kalachova, G.S.; Kolmakova, A.A.; Dubovskaya, O.P.

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Distribution and migration of metals in trophic chains of the Yenisei ecosystem near Krasnoyarsk City / O. V. Anishchenko [et al.] // Water Resources. - 2009. - Vol. 36, Is. 5. - P594-603, DOI 10.1134/S0097807809050121 . - ISSN 0097-8078
Кл.слова (ненормированные):
Aquatic organisms -- Atomic absorption -- Bulk concentration -- Cd concentrations -- Cr concentration -- Ecosystem components -- Emission spectral analysis -- Flame photometry -- Fly larvae -- International standards -- Periphytons -- Primary producers -- Waterbodies -- Aquaculture -- Cadmium -- Chromium -- Ecology -- Photometry -- Spectroscopy -- Spectrum analysis -- Spectrum analyzers -- Water absorption -- Water analysis -- Concentration (process) -- aluminum -- aquatic ecosystem -- aquatic organism -- cadmium -- chromium -- concentration (composition) -- copper -- pollutant transport -- river pollution -- trophic environment -- Krasnoyarsk [Russian Federation] -- Russian Federation -- Yenisei River -- Bryophyta -- Decapoda (Crustacea) -- Thymallus arcticus
Аннотация: Methods of atomic absorption, flame photometry, and emission spectral analysis were used to study the concentrations of metals in water and major ecosystem components of the Yenisei River upstream of Krasnoyarsk City (conventionally background area). The mean bulk concentrations of Al and Cu in water exceeded the MAC for water bodies used for fishery. Cu concentration in freshwater shrimp was found to be reliably higher than that in the link of primary producers (periphyton), and Cd concentration in caddis fly larvae was found to exceed that in water moss. The maximal concentrations of metals among the examined aquatic organisms were recorded in periphyton. Cr concentration in the muscles of Arctic grayling was found to exceed some international standards. В© 2009 Pleiades Publishing, Ltd.

Scopus
Держатели документа:
Institute of Geophysics, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50, Krasnoyarsk 660036, Russian Federation
Siberian Federal University, prosp. Svobodnyi 79, Krasnoyarsk 660046, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Anishchenko, O.V.; Gladyshev, M.I.; Kravchuk, E.S.; Sushchik, N.N.; Gribovskaya, I.V.

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Efficiency of transfer of essential polyunsaturated fatty acids along trophic chains in aquatic ecosystems / M. I. Gladyshev [et al.] // Doklady Biochemistry and Biophysics. - 2009. - Vol. 426, Is. 1. - P158-160, DOI 10.1134/S1607672909030089 . - ISSN 1607-6729
Кл.слова (ненормированные):
essential fatty acid -- unsaturated fatty acid -- water -- article -- ecosystem -- metabolism -- Ecosystem -- Fatty Acids, Essential -- Fatty Acids, Unsaturated -- Water

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk 660036, Russian Federation
Siberian Federal University, Krasnoyarsk 660041, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Gladyshev, M.I.; Sushchik, N.N.; Makhutova, O.N.; Kalacheva, G.S.; Kolmakova, A.A.; Kravchuk, E.S.; Dubovskaya, O.P.

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Devil's staircase in double helices self-organization / P. I. Belobrov [et al.] // Physics Letters A. - 1987. - Vol. 122, Is. 6-7. - P323-326 . - ISSN 0375-9601
Аннотация: The structures of the ground state of a discrete model of two interacting helical chains are investigated by the discrete mapping method. When non-interacting chains have different spatial periods, the ground state structure of the model depends on the value of the interaction constant ?. We show the existence of a critical value ?c at which the chains form a common helix. Regular soliton structure is realized for ???c as a ground state. For ??c the system ground state passes through a sequence of transitions of incomplete devil's staircase type. Metastable chaotic structures are shown to exist. В© 1987.

Scopus
Держатели документа:
Kirensky Institute of Physics, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Belobrov, P.I.; Beloshapkin, V.V.; Zaslavsky, G.M.; Tret'yakov, A.G.

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Methods of nonlinear dynamics and equilibrium structures of magnetoelastic chains / P. I. Belobrov, A. G. Tret'yakov, G. M. Zaslavsky // Journal of Statistical Physics. - 1985. - Vol. 38, Is. 1-2. - P393-404, DOI 10.1007/BF01017869 . - ISSN 0022-4715
Кл.слова (ненормированные):
chaos -- Incommensurate structure -- magnetoelastic interaction -- nonlinear resonance
Аннотация: To study equilibrium structures of magnetoelastic chains we have introduced an equivalent system and examined the whole class of its solutions. Appearance of various structures of the chain is due to the choice of an appropriate minimizing solution of the equivalent dynamic system. Commensurate and incommensurate structures, transitions from ferromagnetic to antiferromagnetic states, and transitions to the states with alternating clusters of ordered spins are obtained. Conditions for appearance of chaotic structures and amorphous magnetic states of the chain are discussed. В© 1985 Plenum Publishing Corporation.

Scopus
Держатели документа:
L. V. Kirensky Institute of Physics, USSR Academy of Sciences Siberian Branch, Krasnoyarsk, 660036, Russia : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Belobrov, P.I.; Tret'yakov, A.G.; Zaslavsky, G.M.

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10.

Dynamic model of the haeme-haeme interaction / I. I. Gitel'zon, T. P. Sandalova, Yu. A. Kudenko // Biophysics. - 1973. - Vol. 18, Is. 4. - P804-807 . - ISSN 0006-3509
Аннотация: The possibility of explaining the acceleration of the reaction of oxygenation of haemoglobin from studying the thermodynamic properties of the molecular chains of haemoglobin present in contact with each other is considered. В© 1974.

Scopus
Держатели документа:
Institute of Physics, U.S.S.R. Academy of Sciences, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Gitel'zon, I.I.; Sandalova, T.P.; Kudenko, Yu.A.

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11.

Quantitative criteria for estimation of natural and artificial ecosystems functioning / N. S. Pechurkin // Advances in Space Research. - 2005. - Vol. 35, Is. 9 SPEC. ISS. - P1507-1511, DOI 10.1016/j.asr.2005.01.059 . - ISSN 0273-1177
Кл.слова (ненормированные):
Artificial ecosystems -- Limiting substances -- Natural ecosystems -- Quantitative criteria -- Carbon dioxide -- Energy management -- Estimation -- Hierarchical systems -- Personnel -- Plants (botany) -- Reliability -- Artificial ecosystems -- Limiting substances -- Natural ecosystems -- Quantitative criteria -- Ecosystems -- carbon -- biomass -- chemistry -- conference paper -- ecology -- ecosystem -- energy transfer -- microclimate -- photosynthesis -- population dynamics -- Biomass -- Carbon -- Ecological Systems, Closed -- Ecology -- Ecosystem -- Energy Transfer -- Life Support Systems -- Photosynthesis -- Population Dynamics
Аннотация: Using biotic turnover of substances in trophic chains, natural and artificial ecosystems are similar in functioning, but different in structure. It is necessary to have quantitative criteria to evaluate the efficiency of artificial ecosystems (AES). These criteria are dependent on the specific objectives for which the AES are designed. For example, if AES is considered for use in space, important criteria are efficiency in use of mass, power, volume (size) and human labor and reliability. Another task involves the determination of quantitative criteria for the functioning of natural ecosystems. To solve the problem, it is fruitful to use a hierarchical approach suitable for both individual links and the ecosystem as a whole. Energy flux criteria (principles) were developed to estimate the functional activities of biosystems at the population, community and ecosystem levels. A major feature of ecosystems as a whole is their biotic turnover of matter the rate of which is restricted by the lack of limiting substances. Obviously, the most generalized criterion is to take into account the energy flux used by the biosystem and the quantity of limiting substance included in its turnover. The use of energy flux by ecosystem, EUSED - is determined from the photoassimilation of CO2 by plants (per time unit). It can be approximately estimated as the net primary production of photosynthesis (NPP). So, the ratio of CO 2 photoassimilation rate (sometimes, measured as NPP) to the total mass of limiting substrate can serve as a main universal criterion (MUC). This MUC characterizes the specific cycling rate of limiting chemical elements in the system and effectiveness of every ecosystem including the global Biosphere. Comparative analysis and elaboration of quantitative criteria for estimation of natural and artificial ecosystems activities is of high importance both for theoretical considerations and for real applications. В© 2005 COSPAR. Published by Elsevier Ltd. All rights reserved.

Scopus
Держатели документа:
Institute of Biophysics, SB, RAS, Krasnoyarsk 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Pechurkin, N.S.

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12.

Competition between links in "producers-consumer" trophic chains in an aquatic closed system with spatially separated components / T. I. Pisman, N. S. Pechurkin, L. A. Somova // Advances in Space Research. - 2001. - Vol. 27, Is. 9. - P1599-1603, DOI 10.1016/S0273-1177(01)00255-1 . - ISSN 0273-1177
Кл.слова (ненормированные):
Algae -- Aquifers -- Biodiversity -- Metabolism -- Nitrogen -- Protozoa -- Aquatic closed systems -- Spatially separated components -- Space research -- aquatic ecosystem -- competition -- grazing -- primary production -- fresh water -- nitrogen -- animal -- article -- Chlorella -- food chain -- green alga -- metabolism -- microclimate -- Paramecium -- Rotifera -- Algae, Green -- Animals -- Chlorella -- Ecological Systems, Closed -- Food Chain -- Fresh Water -- Nitrogen -- Paramecium -- Rotifera
Аннотация: The work analyzes functioning of a "producer-consumer" closed aquatic system with spatially separated links, where each component consisted of two species. Producers in the system were the microalgae of Chlorella vulgaris and Scenedesmus sp., consumers - Paramecium caudatum infusoria and Brachionus sp. rotifers. In the experiment the competing predators were consuming on a mixed culture of algae, and the competition of algae was studied under nitrogen limitation. Under these conditions competitiveness of Scenedemus was higher than that of Chlorella vulgaris. Metabolism products of Scenedesmus algae have been found to have negative effect on reproduction of Paramecium caudatum protozoa. Predator population dynamics in the "consumer" link demonstrated that the rotifers that consume two algal species are more competitive compared to protozoa feeding on chlorella only. В© 2001 COSPAR. Published by Elsevier Science Ltd. All rights reserved.

Scopus
Держатели документа:
Institute of Biophysics, Krasnoyarsk 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Pisman, T.I.; Pechurkin, N.S.; Somova, L.A.

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13.

Biosynthesis of multi-component polyhydroxyalkanoates by the bacterium Wautersia eutropha [Text] / T. G. Volova, G. S. Kalacheva, A. . Steinbuchel // Macromol. Symp. - 2008. - Vol. 269: 4th European Symposium on Biopolymers (OCT 02-04, 2007, Kusadasi, TURKEY). - P1-7, DOI 10.1002/masy.200850901. - Cited References: 20 . - 7. - ISSN 1022-1360

РУБ Polymer Science
Рубрики:
RALSTONIA-EUTROPHA
   ALCALIGENES-EUTROPHUS
   AEROMONAS-HYDROPHILA
   ENHANCED PRODUCTION
   PHA SYNTHASE
   COPOLYESTERS
   POLY(3-HYDROXYBUTYRATE-CO-3-HYDROXYHEXANOATE)
   3-HYDROXYBUTYRATE
   ACID
Кл.слова (ненормированные):
autotrophic and mixotrophic growth -- multi-component polyhydroxyalkanoates -- Wautersia eutropha
Аннотация: The study addresses the effect of different conditions of carbon nutrition on synthesis of polyhydroxyalkanoates by the bacterium Wautersia eutropha. In experiments with two wild type strains (H16 and 85786), it has been first found that under mixotrophic growth conditions -CO2+ co-substrate (alkanoic acids) - bacteria can synthesize multi-component PHAs, consisting of short- and medium-chain-length monomers with carbon chains containing 4 to 8 atoms. It has been shown that PHA composition is determined by the type of the co-substrate. Fatty acids with odd number of carbons induce bacteria to synthesize four- and five-component PHAs with hydroxybutyrate, hydroxyvalerate as major monomers and hydroxyhexanoate, hydroxyheptanoate and hydroxyoctanoate as minor, occasionally occurring, ones. Fatty acids with even number of carbons induce synthesis of not only their respective monomers (hydroxyhexanoate and hydroxyoctanoate) but also hydroxyvalerate, making possible synthesis of four-component PHAs, containing hydroxybutyrate and hydroxyhexanoate as major components (up to 18 mol%). A family of short- and medium-chain-length four- and five-component PHAs were synthesized and their physicochemical properties examined.

Держатели документа:
[Volova, Tatiana G.
Kalacheva, Galina S.] Inst Biophys SB RAS, Krasnoyarsk 660036, Russia
[Volova, Tatiana G.] Siberian Fed Univ, Krasnoyarsk, Russia
[Steinbuechel, Alexander] Inst Mol Microbiol & Biotechnol, Munster, Germany : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Volova, T.G.; Kalacheva, G.S.; Steinbuchel, A...

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14.

Bioluminescent and spectroscopic properties of His-Trp-Tyr triad mutants of obelin and aequorin / E. V. Eremeeva [et al.] // Photochem. Photobiol. Sci. - 2013. - Vol. 12, Is. 6. - P1016-1024, DOI 10.1039/c3pp00002h. - Cited References: 46. - The work was supported by RFBR grant 12-04-00131, by the Programs of the Government of Russian Federation "Measures to Attract Leading Scientists to Russian Educational Institutions" (grant 11.G34.31.0058), "Molecular and Cellular Biology" of RAS, President of Russian Federation "Leading science school" (grant 1044.2012.2). E.V.E. was supported by Wageningen University Sandwich PhD-Fellowship Program. . - ISSN 1474-905X

РУБ Biochemistry & Molecular Biology + Biophysics + Chemistry, Physical
Рубрики:
CA2+-REGULATED PHOTOPROTEINS
   CA2+-BINDING PHOTOPROTEIN
   SEQUENCE-ANALYSIS
   CRYSTAL-STRUCTURE
   VIOLET BIOLUMINESCENCE
   ANGSTROM RESOLUTION
   MNEMIOPSIS-LEIDYI
   LIGHT-EMISSION
   W92F OBELIN
   CLONING
Аннотация: Ca2+-regulated photoproteins are responsible for the bioluminescence of a variety of marine organisms, mostly coelenterates. The photoproteins consist of a single polypeptide chain to which an imidazopyrazinone derivative (2-hydroperoxycoelenterazine) is tightly bound. According to photoprotein spatial structures the side chains of His175, Trp179, and Tyr190 in obelin and His169, Trp173, Tyr184 in aequorin are at distances that allow hydrogen bonding with the peroxide and carbonyl groups of the 2-hydroperoxycoelenterazine ligand. We replaced these amino acids in both photoproteins by residues with different hydrogen bond donor-acceptor capacity. All mutants exhibited luciferase-like bioluminescence activity, hardly present in the wild-type photoproteins, and showed low or no photoprotein activity, except for aeqH169Q (24% of wild-type activity), obeW179Y (23%), obeW179F (67%), obeY190F (14%), and aeqY184F (22%). The results clearly support the supposition made from photoprotein spatial structures that the hydrogen bond network formed by His-Trp-Tyr triad participates in stabilizing the 2-hydroperoxy adduct of coelenterazine. These residues are also essential for the positioning of the 2-hydroperoxycoelenterazine intermediate, light emitting reaction, and for the formation of active photoprotein. In addition, we demonstrate that although the positions of His-Trp-Tyr residues in aequorin and obelin spatial structures are almost identical the substitution effects might be noticeably different.

Держатели документа:
[Eremeeva, Elena V.
Markova, Svetlana V.
Frank, Ludmila A.
Vysotski, Eugene S.] Russian Acad Sci, Siberian Branch, Inst Biophys, Photobiol Lab, Krasnoyarsk 660036, Russia
[Eremeeva, Elena V.
Visser, Antonie J. W. G.
van Berkel, Willem J. H.] Wageningen Univ, Biochem Lab, NL-6703 HA Wageningen, Netherlands
[Eremeeva, Elena V.
Markova, Svetlana V.
Frank, Ludmila A.
Vysotski, Eugene S.] Siberian Fed Univ, Inst Fundamental Biol & Biotechnol, Lab Bioluminescence Biotechnol, Krasnoyarsk 660041, Russia
ИБФ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Eremeeva, E.V.; Markova, S.V.; Frank, L.A.; Visser, AJWG; van Berkel, WJH; Vysotski, E.S.

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15.

Role of key residues of obelin in coelenterazine binding and conversion into 2-hydroperoxy adduct [Text] / E. V. Eremeeva [et al.] // J. Photochem. Photobiol. B-Biol. - 2013. - Vol. 127. - P133-139, DOI 10.1016/j.jphotobiol.2013.08.012. - Cited References: 65. - The work was supported by RFBR grant 12-04-00131, by the Programs of the Government of Russian Federation "Measures to Attract Leading Scientists to Russian Educational Institutions" (grant 11.G34.31.0058), "Molecular and Cellular Biology" of RAS, President of Russian Federation "Leading science school" (grant 3951.2012.4). E.V.E. was supported by Wageningen University Sandwich PhD-Fellowship Program. . - ISSN 1011-1344

РУБ Biochemistry & Molecular Biology + Biophysics
Рубрики:
CA2+-REGULATED PHOTOPROTEINS
   SEQUENCE-ANALYSIS
   CRYSTAL-STRUCTURE
   APO-OBELIN
   CA2+-BINDING PHOTOPROTEIN
   VIOLET BIOLUMINESCENCE
   AEQUORIN REGENERATION
   ANGSTROM RESOLUTION
   RECOMBINANT OBELIN
   MNEMIOPSIS-LEIDYI
Кл.слова (ненормированные):
Bioluminescence -- Coelenterazine -- Obelin -- Aequorin -- Photoprotein
Аннотация: Bioluminescence of a variety of marine organisms is caused by monomeric Ca2+-regulated photoproteins, to which a peroxy-substituted coelenterazine, 2-hydroperoxycoelenterazine, is firmly bound. From the spatial structure the side chains of Tyr138, His175, Trp179, and Tyr190 of obelin are situated within the substrate-binding pocket at hydrogen bond distances with different atoms of the 2-hydroperoxycoelenterazine. Here we characterized several obelin mutants with substitutions of these residues regarding their bioluminescence, coelenterazine binding, and kinetics of active obelin formation. We demonstrate that Tyr138, His175, Trp179, and Tyr190 are all important for coelenterazine activation; substitution of any of these residues leads to significant decrease of the apparent reaction rate. The hydrogen bond network formed by Tyr138, Trp179 and Tyr190 participates in the proper positioning of coelenterazine in the active site and subsequent stabilization of the 2-hydroperoxy adduct of coelenterazine. His175 might serve as a proton shuttle during 2-hydroperoxycoelenterazine formation. (C) 2013 Elsevier B.V. All rights reserved.

WOS
Держатели документа:
[Eremeeva, Elena V.
Markova, Svetlana V.
Vysotski, Eugene S.] Russian Acad Sci, Photobiol Lab, Inst Biophys, Siberian Branch, Krasnoyarsk 660036, Russia
[Eremeeva, Elena V.
van Berkel, Willem J. H.] Wageningen Univ, Biochem Lab, NL-6703 HA Wageningen, Netherlands
[Eremeeva, Elena V.
Markova, Svetlana V.
Vysotski, Eugene S.] Siberian Fed Univ, Inst Fundamental Biol & Biotechnol, Lab Bioluminescence Biotechnol, Krasnoyarsk 660041, Russia
ИБФ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Eremeeva, E.V.; Markova, S.V.; van Berkel, WJH; Vysotski, E.S.; RFBR [12-04-00131]; Programs of the Government of Russian Federation "Measures to Attract Leading Scientists to Russian Educational Institutions" [11.G34.31.0058]; "Molecular and Cellular Biology" of RAS, President of Russian Federation "Leading science school" [3951.2012.4]; Wageningen University Sandwich PhD-Fellowship Program

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16.

Production of EPA and DHA in aquatic ecosystems and their transfer to the land [Text] / M. I. Gladyshev, N. N. Sushchik, O. N. Makhutova // Prostaglandins Other Lipid Mediat. - 2013. - Vol. 107. - P117-126, DOI 10.1016/j.prostaglandins.2013.03.002. - Cited References: 129. - This work was supported by grants of Russian Foundation for Basic Research (RFBR) No. 11-04-00168 and No. 12-05-00298, and also by the project B-15 of Siberian Federal University, carried out according to Federal Tasks of Ministry of Education and Science of Russian Federation. We are grateful to two anonymous reviewers for their helpful comments to improve the manuscript. . - 10. - ISSN 1098-8823

РУБ Biochemistry & Molecular Biology + Cell Biology
Рубрики:
POLYUNSATURATED FATTY-ACIDS
   FRESH-WATER FISH
   EICOSAPENTAENOIC ACID
   DOCOSAHEXAENOIC ACID
   YENISEI RIVER
   BIOTECHNOLOGICAL PRODUCTION
   ARBUSCULAR MYCORRHIZAL
   CAENORHABDITIS-ELEGANS
   MICROBIAL COMMUNITY
   THYMALLUS-ARCTICUS
Кл.слова (ненормированные):
Eicosapentaenoic acid -- Docosahexaenoic acid -- Aquatic ecosystems -- Trophic transfer efficiency
Аннотация: Most omnivorous animals, including humans, have to some degree relied on physiologically important polyunsaturated fatty acids (PUFAs), such as eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) from food. Only some taxa of microalgae, rather than higher plants can synthesize de novo high amounts of EPA and DHA. Once synthesized by microalgae, PUFA are transferred through trophic chain to organisms of higher levels. Thus, aquatic ecosystems play the unique role in the Biosphere as the principal source of EPA and DHA for most omnivorous animals, including inhabitants of terrestrial ecosystems. PUFA are transferred from aquatic to terrestrial ecosystems through riparian predators, drift of carrion and seaweeds, emergence of amphibiotic insects, and water birds. The essential PUFA are transferred through trophic chains with about twice higher efficiency than bulk carbon. Thereby, PUFA are accumulated, rather than diluted in biomass of organisms of higher trophic levels, e.g., in fish. Mankind is faced with a severe deficiency of EPA and DHA in diet. Although additional sources of PUFA supply for humans, such as aquaculture, biotechnology of microorganisms and transgenic terrestrial oil-seed producing plants are developed, natural fish production of aquatic ecosystems will remain one of the main sources of EPA and DHA for humans. Aquatic ecosystems have to be protected from anthropogenic impacts, such as eutrophication, pollution and warming, which reduce PUFA production. (C) 2013 Elsevier Inc. All rights reserved.

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Scopus
Держатели документа:
[Gladyshev, Michail I.
Sushchik, Nadezhda N.
Makhutova, Olesia N.] Russian Acad Sci, Inst Biophys, Siberian Branch, Krasnoyarsk 660036, Russia
[Gladyshev, Michail I.
Sushchik, Nadezhda N.] Siberian Fed Univ, Krasnoyarsk 660041, Russia
ИБФ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Gladyshev, M.I.; Sushchik, N.N.; Makhutova, O.N.; Russian Foundation for Basic Research (RFBR) [11-04-00168, 12-05-00298]; project B-15 of Siberian Federal University

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17.

METHODS OF NONLINEAR DYNAMICS AND EQUILIBRIUM STRUCTURES OF MAGNETOELASTIC CHAINS [Text] / P. I. BELOBROV, A. G. TRETYAKOV, G. M. ZASLAVSKY // J. Stat. Phys. - 1985. - Vol. 38, Is. 01.02.2013. - P. 393-404, DOI 10.1007/BF01017869. - Cited References: 22 . - ISSN 0022-4715

РУБ Physics, Mathematical

WOS : 660036, Красноярск, Академгородок, д. 50, стр. 50
Доп.точки доступа:
BELOBROV, P.I.; TRETYAKOV, A.G.; ZASLAVSKY, G.M.

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18.

Competition between links in "producer-consumer" trophic chains in an aquatic closed system with spatially separated components [Text] / T. I. Pisman, N. S. Pechurkin, L. A. Somova ; ed. n, NS Pechur // SPACE LIFE SCIENCES: CLOSED ECOLOGICAL SYSTEMS: EARTH AND SPACE APPLICATIONS. Ser. ADVANCES IN SPACE RESEARCH : ELSEVIER SCIENCE BV, 2001. - Vol. 27: F4 4 Symposium of COSPAR Scientific Commission F held at the 33rd COSPAR Scientific Assembly (JUL, 2000, WARSAW, POLAND), Is. 9. - P. 1599-1603, DOI 10.1016/S0273-1177(01)00255-1. - Cited References: 13 . - ISBN 0273-1177

РУБ Engineering, Aerospace + Astronomy & Astrophysics + Geosciences, Multidisciplinary + Meteorology & Atmospheric Sciences

Аннотация: The work analyzes functioning of a "producer-consumer" closed aquatic system with spatially separated links, where each component consisted of two species. Producers in the system were the microalgae of Chlorella vulgaris and Scenedesmus sp., consumers - Paramecium caudatum infusoria and Brachionus sp. rotifers. In the experiment the competing predators were consuming on a mixed culture of algae, and the competition of algae was studied under nitrogen limitation. Under these conditions competitiveness of Scenedesmus was higher than that of Chlorella vulgaris. Metabolism products of Scenedesmus algae have been found to have negative effect on reproduction of Paramecium caudatum protozoa. Predator population dynamics in the "consumer" link demonstrated that the rotifers that consume two algal species are more competitive compared to protozoa feeding on chlorella only. (C) 2001 COSPAR. Published by Elsevier Science Ltd. All rights reserved.

WOS
Держатели документа:
Inst Biophys, Krasnoyarsk 660036, Russia
ИБФ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Pisman, T.I.; Pechurkin, N.S.; Somova, L.A.; Pechur, n, NS \ed.\

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19.

Constructing Slow-Release Formulations of Metribuzin Based on Degradable Poly(3-hydroxybutyrate) / A. N. Boyandin [et al.] // J. Agric. Food Chem. - 2016. - Vol. 64, Is. 28. - P5625-5632, DOI 10.1021/acs.jafc.5b05896 . - ISSN 0021-8561
Кл.слова (ненормированные):
controlled release -- degradable poly(3-hydroxybutyrate) -- herbicide -- metribuzin -- release kinetics -- Polyethylene glycols -- Weed control -- Controlled release -- Environmental release -- Herbicide release -- Laboratory system -- Matrix formulation -- Metribuzin -- Poly-3-hydroxybutyrate -- Release kinetics -- Herbicides
Аннотация: Experimental formulations of herbicide metribuzin embedded in matrices of degradable natural polymer poly(3-hydroxybutyrate) (P3HB) and its composites with poly(ethylene glycol) (PEG), poly-?-caprolactone (PCL), and wood powder have been prepared in the form of pressed pellets containing 75% polymeric basis (pure P3HB or its composite with a second component at a ratio of 7:3) and 25% metribuzin. Incubation of formulations in soil laboratory systems led to the degradation of the matrix and herbicide release. The most active release of metribuzin (about 60% of the embedded herbicide over 35 days) was detected for the P3HB/PEG carrier compared to the P3HB, P3HB/wood, and P3HB/PCL forms (30-40%). Thus, the study shows that herbicide release can be controlled by the matrix formulation. Metribuzin formulations exerted a significant herbicidal effect on the plant Agrostis stolonifera, used as a weed plant model. Application of these long-term formulations will make it possible to reduce environmental release of chemicals, which will restrict the rate of their accumulation in trophic chains of ecosystems and abate their adverse effects on the biosphere. © 2016 American Chemical Society.

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Смотреть статью,
WOS
Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, 50/50 Akademgorodok, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Boyandin, A. N.; Zhila, N. O.; Kiselev, E. G.; Volova, T. G.

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20.

Properties of a novel quaterpolymer P(3HB/4HB/3HV/3HHx) / T. G. Volova [et al.] // Polymer. - 2016. - Vol. 101. - P67-74, DOI 10.1016/j.polymer.2016.08.048 . - ISSN 0032-3861
Кл.слова (ненормированные):
Physicochemical and mechanical properties -- Polyhydroxyalkanoates -- Quaterpolymers -- Biocompatibility -- Cell culture -- Chain length -- Chains -- Decomposition -- 3-Hydroxyhexanoate -- Degrees of crystallinity -- Elongation at break -- Physico-chemical and mechanical properties -- Polyhydroxyalkanoates -- Quaterpolymers -- Short chain lengths -- Thermal decomposition temperature -- Film preparation
Аннотация: Cupriavidus eutrophus В10646 was used to synthesize a series of polyhydroxyalkanoate (PHA) quaterpolymers composed of the short-chain-length 3-hydroxybutyrate (3HB), 4-hydroxybutyrate (4HB), and 3-hydroxyvalerate (3HV) and the medium-chain-length 3-hydroxyhexanoate (3HHx). The molar fraction of 3HB in the quaterpolymers varied between 63.5 and 93.1 mol.%, 3HV – between 1.1 and 24.6 mol.%, 4HB – between 2.4 and 15.6 mol.%, and 3HHx – between 0.4 and 4.8 mol.%. The properties of PHA quaterpolymers were significantly different from those of the P(3HB) homopolymer: they had much lower degrees of crystallinity (up to 30–45%), and lower melting points and thermal decomposition temperatures, with the interval between these temperatures remaining practically unchanged. Films prepared from PHA quaterpolymers were rougher and more porous than P(3HB) films; they showed higher values of elongation at break (up to 6–113%), i.e. were more elastic. Films prepared from PHA quaterpolymers were biocompatible and had no toxic effect on mouse fibroblast NIH 3T3 cells. © 2016 Elsevier Ltd

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Смотреть статью,
WOS
Держатели документа:
Siberian Federal University, 79 Svobodnyi Avenue, Krasnoyarsk, Russian Federation
Institute of Biophysics of Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, Russian Federation
Institute of Chemistry and Chemical Technology of Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, Russian Federation
L.V. Kirensky Institute of Physics of Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Volova, T. G.; Vinogradova, O. N.; Zhila, N. O.; Peterson, I. V.; Kiselev, E. G.; Vasiliev, A. D.; Sukovatiy, A. G.; Shishatskaya, E. I.

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