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Evidence for two abrupt warming events of SST in the last century / C. A. Varotsos [et al.] // Theoretical and Applied Climatology. - 2013. - P1-10, DOI 10.1007/s00704-013-0935-8 . - ISSN 0177-798X
Аннотация: We have recently suggested that the warming in the sea surface temperature (SST) since 1900, did not occur smoothly and slowly, but with two rapid shifts in 1925/1926 and 1987/1988, which are more obvious over the tropics and the northern midlatitudes. Apart from these shifts, most of the remaining SST variability can be explained by the El Nino Southern Oscillation and the Pacific Decadal Oscillation (PDO). Here, we provide evidence that the timing of these two SST shifts (around 60В years) corresponds well to the quasi-periodicity of many natural cycles, like that of the PDO, the global and Northern Hemisphere annual mean temperature, the Atlantic Multi-decadal Oscillation, the Inter-Tropical Convergence Zone, the Southwest US Drought data, the length of day, the air surface temperature, the Atlantic meridional overturning circulation and the change in the location of the centre of mass of the solar system. In addition, we show that there exists a strong seasonal link between SST and ENSO over the tropics and the NH midlatitudes, which becomes stronger in autumn of the Northern Hemisphere. Finally, we found that before and after each SST shift, the intrinsic properties of the SST time series obey stochastic dynamics, which is unaffected by the modulation of these two shifts. In particular, the SST fluctuations for the time period between the two SST shifts exhibit 1/f-type long-range correlations, which are frequently encountered in a large variety of natural systems. Our results have potential implications for future climate shifts and crossing tipping points due to an interaction of intrinsic climate cycles and anthropogenic greenhouse gas emissions. В© 2013 Springer-Verlag Wien.

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Держатели документа:
Climate Research Group, Division of Environmental Physics and Meteorology, Faculty of Physics, University of Athens, University Campus Bldg. Phys. V, Athens, 15784, Greece
British Antarctic Survey, Natural Environment Research Council, Cambridge, United Kingdom
Institute of Biophysics, SB RAS, Russian Academy of Sciences, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Varotsos, C.A.; Franzke, C.L.E.; Efstathiou, M.N.; Degermendzhi, A.G.

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Ecology of purple sulfur bacteria in the highly stratified meromictic Lake Shunet (Siberia, Khakassia) in 2002-2009 / D. Y. Rogozin, V. V. Zykov, A. G. Degermendzhi // Microbiology (Russian Federation). - 2012. - Vol. 81, Is. 6. - P727-735, DOI 10.1134/S0026261712060148 . - ISSN 0026-2617
Кл.слова (ненормированные):
bacteriochlorophyll a -- chemocline -- meromictic lake -- purple sulfur bacteria -- seasonal dynamics -- Bacteria (microorganisms) -- Chromatiaceae
Аннотация: Phototrophic sulfur bacteria form dense accumulations in the chemocline zones of stratified lakes where light reaches the sulfide-containing layers of water. Many works are dedicated to the ecophysiology of these microorganisms in meromictic lakes. However, the role of these microorganisms in the trophic network of these ecosystems, the ways of biomass utilization, and the contribution to the turnover of biogenic elements have so far been insufficiently understood. This work deals with the analysis of many years' seasonal dynamics of the biomass of purple sulfur bacteria and the physicochemical conditions of their environment in Lake Shunet (Siberia, Khakassia, Russia), unraveling the causes of their anomalous development in the chemocline of this lake, as well as the comparative analysis of such type of ecosystems. Lake Shunet is characterized by markedly pronounced stratification and the high density of purple sulfur bacteria (PSB) in the chemocline, which is comparable to that of Lake Mahoney (Canada) where the number of PSB is the greatest among those known in the world. It was shown that, in the period 2002-2009, the total amount of bacterio-chlorophyll a in the water column of Lake Shunet increased and did not correlate with the seasonal variations in temperature and illumination in the chemocline. It was established that PSB cells in the purple layer experienced the effect of self-shading. The sedimentation rate of purple sulfur bacteria in Lake Shunet was low due to the pronounced density gradient in the chemocline zone. Thus, the high number of PSB in the chemocline was due to the combination of strong illumination, a high sulfide concentration, and a high water density gradient, which was responsible for stable stratification and contributed to the accumulation of the cells in a narrow layer. The data obtained could be useful for the paleoreconstruction of climatically deter-mined changes in the level of the lake and its periods of meromixis by the presence of carotenoids and bacte-riochlorophylls in the bottom sediments. В© 2012 Pleiades Publishing, Ltd.

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Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Rogozin, D.Y.; Zykov, V.V.; Degermendzhi, A.G.

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Principle of the worst scenario in the modelling past and future of biosphere dynamics / S. I. Bartsev, A. G. Degermendzhi, D. V. Erokhin // Ecological Modelling. - 2008. - Vol. 216, Is. 2. - P160-171, DOI 10.1016/j.ecolmodel.2008.03.002 . - ISSN 0304-3800
Кл.слова (ненормированные):
Irreversible biosphere changes -- Minimal model of biosphere -- The worst scenario principle -- Biospherics -- agricultural land -- anthropogenic effect -- atmosphere-biosphere interaction -- carbon dioxide -- deforestation -- Little Ice Age -- numerical model -- Eurasia -- Europe
Аннотация: The "biosphere-climate" system is subjected to different influences (influx of anthropogenic CO2 and pollutants, deforestation, harmful land management, biological species depopulation, etc.). Therefore, the vital question arises: "Can these influences lead to irreversible negative changes in the climate-biosphere system or a global ecological catastrophe?" The possibility of irreversible changes may be not very high, but one cannot ignore it. So the main aim of our investigation is to evaluate possible consequences of human impact on the biosphere focusing on irreversible changes of it. Traditional mathematical complicated models describe the biosphere in great detail, but the large number of equations and parameters leads to accumulation of uncertainties in the forecast due to inevitable uncertainties of experimental estimations of model parameters. An approach based on the principle of the worst scenario was proposed. Minimization of mathematical model with respect to this principle is conducted to study limiting (but possible) versions of models in which the contribution of the possible compensatory and smoothing mechanisms is minimal. Namely the most unfavorable scenarios (corresponding to the values of parameters at the boundaries of confidence interval) have to be considered in estimating consequences of anthropogenic impact. One of the fastest CO2 releasing mechanisms, based on the positive feedback effect, was considered in the context of the worst scenario principle. The family of simple mathematical models was created for biosphere dynamics representation on different timescales. The main result of the investigation consists in confirmation of the possibility of negative and irreversible changes in the "biosphere-climate" system, caused by amplification of the positive feedback: "anthropogenic emission of CO2 - temperature increase - additional CO2 emission due to decomposition of soil organics". Crucial parameters of models, responsible for avalanche-like biosphere changes, are determined. A realizability of hypotheses on anthropogenic causes of Little Ice Age was estimated by corresponding minimal model. Model were used to show the feasibility of the mechanism describing the changing of agricultural field species into indigenous forests in Europe during the Plague, which led to CO2 decrease and temperature fall. В© 2008 Elsevier B.V. All rights reserved.

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Держатели документа:
Institute of Biophysics SB RAS, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Bartsev, S.I.; Degermendzhi, A.G.; Erokhin, D.V.

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Global minimal model of perennial dynamics of carbon in biosphere / S. I. Bartsev, A. G. Degermendzhi, D. V. Erokhin // Doklady Akademii Nauk. - 2005. - Vol. 401, Is. 2. - С. 233-237 . - ISSN 0869-5652
Кл.слова (ненормированные):
Atmospheric temperature -- Carbon -- Climatology -- Ecology -- Greenhouse effect -- Thermal effects -- Biosphere -- Carbon perennial dynamics -- Biology
Аннотация: The suggested model is not intended for describing most probable biosphere dynamics but only for estimating the possibility of catastrophic variant of biosphere dynamics development at antropogenic CO2 emission into atmosphere due to different temperature dependences for key biological biosphere component growth. The main result is demonstration of the possibility of irreversible climate changes and biosphere destruction resulting from interaction of biological processes with greenhouse effect.

Scopus
Держатели документа:
Inst. Biofiziki SO RAN, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Bartsev, S.I.; Degermendzhi, A.G.; Erokhin, D.V.

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Global minimal model of long-term carbon dynamics in the biosphere / S. I. Bartsev, A. G. Degermendzhi, D. V. Erokhin // Doklady Earth Sciences. - 2005. - Vol. 401, Is. 2. - P326-329 . - ISSN 1028-334X
Кл.слова (ненормированные):
carbon cycle -- climate change
Аннотация: Thus, our model demonstrates the possibility of irreversible climatic changes as well as climate and biosphere destruction owing to the interaction between biological processes and the greenhouse effect. The simplicity of the model renders it susceptible to criticism from the standpoint of a maximal exact forecast of biosphere dynamics. However, the development of a unique scenario of expected global changes is rendered extremely unrealistic by the fundamental inaccuracy of estimates of global parameters and the uncertainty of economic forecasts. The development of a series of global dynamics scenarios that vary in degree of optimism seems more appropriate. The most attractive of these are scenarios based on estimates corresponding to the most unfavorable boundaries of confidence intervals. Conditions for the realization of precisely such scenarios should be tested first. Copyright В© 2005 by Pleiades Publishing, Inc.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Bartsev, S.I.; Degermendzhi, A.G.; Erokhin, D.V.

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Challenges and opportunities for integrating lake ecosystem modelling approaches / W. M. Mooij [et al.] // Aquatic Ecology. - 2010. - Vol. 44, Is. 3. - P633-667, DOI 10.1007/s10452-010-9339-3 . - ISSN 1386-2588
Кл.слова (ненормированные):
Adaptive processes -- Analysis -- Aquatic -- Bifurcation -- Biodiversity -- Climate warming -- Community -- Eutrophication -- Fisheries -- Food web dynamics -- Freshwater -- Global change -- Hydrology -- Lake -- Management -- Marine -- Mitigation -- Model integration -- Model limitations -- Non-linear dynamics -- Nutrients -- Plankton -- Population -- Prediction -- Spatial -- Understanding -- adaptive management -- algorithm -- aquatic community -- biodiversity -- ecosystem modeling -- eutrophication -- fishery production -- food web -- fuzzy mathematics -- global warming -- hydrology -- lake ecosystem -- mitigation -- model test -- numerical model -- nutrient availability -- plankton -- prediction -- saline lake -- spatial analysis
Аннотация: A large number and wide variety of lake ecosystem models have been developed and published during the past four decades. We identify two challenges for making further progress in this field. One such challenge is to avoid developing more models largely following the concept of others ('reinventing the wheel'). The other challenge is to avoid focusing on only one type of model, while ignoring new and diverse approaches that have become available ('having tunnel vision'). In this paper, we aim at improving the awareness of existing models and knowledge of concurrent approaches in lake ecosystem modelling, without covering all possible model tools and avenues. First, we present a broad variety of modelling approaches. To illustrate these approaches, we give brief descriptions of rather arbitrarily selected sets of specific models. We deal with static models (steady state and regression models), complex dynamic models (CAEDYM, CE-QUAL-W2, Delft 3D-ECO, LakeMab, LakeWeb, MyLake, PCLake, PROTECH, SALMO), structurally dynamic models and minimal dynamic models. We also discuss a group of approaches that could all be classified as individual based: super-individual models (Piscator, Charisma), physiologically structured models, stage-structured models and trait-based models. We briefly mention genetic algorithms, neural networks, Kalman filters and fuzzy logic. Thereafter, we zoom in, as an in-depth example, on the multi-decadal development and application of the lake ecosystem model PCLake and related models (PCLake Metamodel, Lake Shira Model, IPH-TRIM3D-PCLake). In the discussion, we argue that while the historical development of each approach and model is understandable given its 'leading principle', there are many opportunities for combining approaches. We take the point of view that a single 'right' approach does not exist and should not be strived for. Instead, multiple modelling approaches, applied concurrently to a given problem, can help develop an integrative view on the functioning of lake ecosystems. We end with a set of specific recommendations that may be of help in the further development of lake ecosystem models. В© 2010 The Author(s).

Scopus
Держатели документа:
Netherlands Institute of Ecology (NIOO-KNAW), Department of Aquatic Ecology, Rijksstraatweg 6, 3631 AC Nieuwersluis, Netherlands
Aarhus University, National Environmental Research Institute, Department of Freshwater Ecology, 8600 Silkeborg, Denmark
Greenland Climate Research Centre (GCRC), Greenland Institute of Natural Resources, Kivioq 2, P.O. Box 570, 3900 Nuuk, Greenland
University of Toronto, Department of Physical and Environmental Sciences, Toronto, ON M1C 1A4, Canada
Institute of Computational Modelling (SB-RAS), Siberian Federal University, 660036 Krasnoyarsk, Russian Federation
Tanzania Fisheries Research Institute (TAFIRI), Mwanza Centre, P.O. Box 475, Mwanza, Tanzania
Institute of Biophysics (SB-RAS), Akademgorodok, 660036 Krasnoyarsk, Russian Federation
University of Miami, Florida Integrated Science Centre, USGS, Coral Gables, FL 33124, United States
Wageningen University, Department of Aquatic Ecology and Water Quality, P.O. Box 47, 6700 AA Wageningen, Netherlands
Centre for Ecology and Hydrology, Lancaster Environment Centre, Lake Ecosystem Group, Algal Modelling Unit, Bailrigg, Lancaster LA1 4AP England, United Kingdom
Federal University of Alagoas, Centre for Technology, Campus A.C. Simoes, 57072-970 Maceio-AL, Brazil
Institute of Biochemistry and Biology, Department of Ecology and Ecosystem Modelling, University of Potsdam, Am Neuen Palais 10, 14469 Potsdam, Germany
Swedish University of Agricultural Sciences, Department of Aquatic Sciences and Assessment, P.O. Box 7050, 75007 Uppsala, Sweden
University of Waikato, Centre for Biodiversity and Ecology Research, Private Bag 3105, Hamilton, New Zealand
University of Western Australia, School of Earth and Environment, Crawley, WA 6009, Australia
Technische Universitat Dresden, Institute of Hydrobiology, 01062 Dresden, Germany
Technische Universitat Dresden, Neunzehnhain Ecological Station, Neunzehnhainer Str. 14, 09514 Lengefeld, Germany
Deltares, P.O. Box 177, 2600 MH Delft, Netherlands
Technion-Israel Institute of Technology, Faculty of Civil and Environmental Engineering, Technicon City, Haifa 32000, Israel
Helmholtz Centre for Environmental Research, Department of Lake Research, Brueckstrasse 3a, 39114 Magdeburg, Germany
Witteveen and Bos, P.O. Box 233, 7400 AV Deventer, Netherlands
University of Oslo, Department of Biology, P.O. Box 1066, Blindern, 0316 Oslo, Norway
UNESCO-IHE Institute of Water Education, 2601 DA Delft, Netherlands
Portland State University, Department of Civil and Environmental Engineering, Portland, OR 97207, United States
Netherlands Environmental Assessment Agency (PBL), P.O. Box 303, 3720 AH Bilthoven, Netherlands : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Mooij, W.M.; Trolle, D.; Jeppesen, E.; Arhonditsis, G.; Belolipetsky, P.V.; Chitamwebwa, D.B.R.; Degermendzhy, A.G.; DeAngelis, D.L.; De Senerpont Domis, L.N.; Downing, A.S.; Elliott, J.A.; Fragoso Jr., C.R.; Gaedke, U.; Genova, S.N.; Gulati, R.D.; Hakanson, L.; Hamilton, D.P.; Hipsey, M.R.; 't Hoen, J.; Hulsmann, S.; Los, F.H.; Makler-Pick, V.; Petzoldt, T.; Prokopkin, I.G.; Rinke, K.; Schep, S.A.; Tominaga, K.; van Dam, A.A.; van Nes, E.H.; Wells, S.A.; Janse, J.H.

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Vertical stratification of physical, chemical and biological components in two saline lakes Shira and Shunet (South Siberia, Russia) / A. G. Degermendzhy [et al.] // Aquatic Ecology. - 2010. - Vol. 44, Is. 3. - P619-632, DOI 10.1007/s10452-010-9336-6 . - ISSN 1386-2588
Кл.слова (ненормированные):
Ciliates -- Cryptomonas -- Fishless lakes -- Gammarus -- Mathematical modelling -- Meromictic lakes -- Phytoplankton -- Stratification -- Sulphur bacteria -- amphipod -- bacterium -- biomass -- ciliate -- ecosystem modeling -- flagellate -- meromictic lake -- microbial community -- numerical model -- physicochemical property -- phytoplankton -- population density -- saline lake -- salinity -- stratification -- thermocline -- trophic interaction -- vertical profile -- zooplankton -- Khakassia -- Lake Shira -- Lake Shunet -- Russian Federation -- Siberia -- Amphipoda -- Bacteria (microorganisms) -- Ciliophora -- Copepoda -- Cryptomonas -- Cryptomonas sp. -- Gammaridae -- Gammarus -- Gammarus lacustris -- Phytomastigophorea -- Protista -- Rotifera
Аннотация: A feature of meromictic lakes is that several physicochemical and biological gradients affect the vertical distribution of different organisms. The vertical stratification of physical, chemical and biological components in saline, fishless meromictic lakes Shira and Shunet (Siberia, Russia) is quite different mainly because both mean depth and maximum depth of lakes differ as well as their salinity levels differ. The chemocline of the Lake Shira, as in many meromictic lakes, is inhabited by bacterial community consisting of purple sulphur and heterotrophic bacteria. As the depth of the chemocline is variable, the bacterial community does not attain high densities. The mixolimnion in Lake Shira, which is thermally stratified in summer, also creates different habitat for various species. The distribution of phytoplankton is non-uniform with its biomass peak in the metalimnion. The distribution of zooplankton is also heterogeneous with rotifers and juvenile copepods inhabiting the warmer epilimnion and older copepods found in the cold but oxic hypolimnion. The amphipod Gammarus lacustris which can be assigned to the higher trophic link in the fishless lake's ecosystem, such as Lake Shira, is also distributed non-uniformly, with its peak density generally observed in the thermocline region. The chemocline in Lake Shunet is located at the depth of 5 m, and unlike in Lake Shira, due to a sharp salinity gradient between the mixolimnion and monimolimnion, this depth is very stable. The mixolimnion in Lake Shunet is relatively shallow and the chemocline is inhabited by (1) an extremely dense bacterial community; (2) a population of Cryptomonas sp.; and (3) ciliate community comprising several species. As the mixolimnion of Lake Shunet is not thermally stratified for long period, the phytoplankton and zooplankton populations are not vertically stratified. The gammarids, however, tend to concentrate in a narrow layer located 1-2 m above the chemocline. We believe that in addition to vertical inhomogeneities of both physicochemical parameters, biological and physical factors also play a role in maintaining these inhomogeneities. We conclude that the stratified distributions of the major food web components will have several implications for ecosystem structure and dynamics. Trophic interactions as well as mass and energy flows can be significantly impacted by such heterogeneous distributions. Species spatially separated even by relatively short distances, say a few centimetres will not directly compete. Importantly, we demonstrate that not only bacteria, phytoflagellates and ciliate tend to concentrate in thin layers but also larger-sized species such Gammarus (amphipods) can also under certain environmental conditions have stratified distribution with maxima in relatively thin layer. As the vertical structure of the lake ecosystem is rather complex in such stratified lakes as ours, the strategy of research, including sampling techniques, should consider potentially variable and non-homogeneous distributions. В© 2010 The Author(s).

Scopus
Держатели документа:
Institute of Biophysics SB RAS, 660036 Krasnoyarsk, Akademgorodok, Russian Federation
Siberian Federal University, Svobodnyi 79, 660041 Krasnoyarsk, Russian Federation
Netherlands Environmental Assessment Agency (PBL), P.O. Box 303, 3720 AH Bilthoven, Netherlands
Department of Aquatic Ecology, Netherlands Institute of Ecology (NIOO-KNAW), 3631 AC Nieuwersluis, Netherlands : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Degermendzhy, A.G.; Zadereev, E.S.; Rogozin, D.Y.; Prokopkin, I.G.; Barkhatov, Y.V.; Tolomeev, A.P.; Khromechek, E.B.; Janse, J.H.; Mooij, W.M.; Gulati, R.D.

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A general one-dimensional vertical ecosystem model of Lake Shira (Russia, Khakasia): Description, parametrization and analysis / I. G. Prokopkin [et al.] // Aquatic Ecology. - 2010. - Vol. 44, Is. 3. - P585-618, DOI 10.1007/s10452-010-9326-8 . - ISSN 1386-2588
Кл.слова (ненормированные):
Meromictic brackish lake -- One-dimensional vertical ecological model -- Sensitivity analysis -- alga -- biomass -- brackish water -- diffusion -- ecosystem modeling -- meromictic lake -- microbial community -- model test -- nutrient -- one-dimensional modeling -- parameterization -- phytoplankton -- seasonality -- sensitivity analysis -- solar radiation -- vertical profile -- water chemistry -- water temperature -- zooplankton -- Khakassia -- Lake Shira -- Russian Federation -- algae
Аннотация: A one-dimensional ecological model of the meromictic brackish Lake Shira (Russia, Khakasia) was developed. The model incorporates state-of-the-art knowledge about the functioning of the lake ecosystem using the most recent field observations and ideas from PCLake, a general ecosystem model of shallow freshwater lakes. The model of Lake Shira presented here takes into account the vertical dynamics of biomasses of the main species of algae, zooplankton and microbial community, as well as the dynamics of oxygen, detritus, nutrients and hydrogen sulphide from spring to autumn. Solar radiation, temperature and diffusion are modelled using real meteorological data. The parameters of the model were calibrated to the field data, after applying different methods of sensitivity analysis to the model. The resulting patterns of phytoplankton and nutrients dynamics show a good qualitative and quantitative agreement with the field observations during the whole summer season. Results are less satisfactory with respect to the vertical distribution of zooplankton biomass. We hypothesize that this is due to the fact that the current model does not take the sex and age structure of zooplankton into account. The dynamics of oxygen, hydrogen sulphide and the modelled positions of the chemocline and thermocline are again in good agreement with field data. This resemblance confirms the validity of the approach we took in the model regarding the main physical, chemical and ecological processes. This general model opens the way for checking various hypotheses on the functioning of the Lake Shira ecosystem in future investigations and for analysing options for management of this economically important lake. В© 2010 Springer Science+Business Media B.V.

Scopus
Держатели документа:
Institute of Biophysics, Akademgorodok, 660036 Krasnoyarsk, Russian Federation
Netherlands Institute of Ecology, Centre for Limnology, Rijksstraatweg 6, 3631 AC Nieuwersluis, Netherlands
Netherlands Environmental Assessment Agency (PBL), Postbus 303, 3720 AH Bilthoven, Netherlands : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Prokopkin, I.G.; Mooij, W.M.; Janse, J.H.; Degermendzhy, A.G.

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Effect of winter conditions on distributions of anoxic phototrophic bacteria in two meromictic lakes in Siberia, Russia / D. Y. Rogozin [et al.] // Aquatic Ecology. - 2009. - Vol. 43, Is. 3. - P661-672, DOI 10.1007/s10452-009-9270-7 . - ISSN 1386-2588
Кл.слова (ненормированные):
Chemocline -- Green sulphur bacteria -- Purple sulphur bacteria -- Snow -- Winter -- anoxic conditions -- bacterium -- biomass -- ice cover -- light intensity -- meromictic lake -- photoautotrophy -- remote sensing -- vertical distribution -- Eurasia -- Khakassia -- Lake Shira -- Lake Shunet -- Russian Federation -- Siberia -- Bacteria (microorganisms) -- Photobacteria
Аннотация: The year-to-year variations of vertical distribution and biomass of anoxic phototrophic bacteria were studied during ice periods 2003-2005 and 2007-2008 in meromictic lakes Shira and Shunet (Southern Siberia, Russian Federation). The bacterial layers in chemocline of both lakes were sampled with a thin-layer hydraulic multi-syringe sampler. In winter, biomass of purple sulphur bacteria varied considerably depending on the amount of light penetrating into the chemocline through the ice and snow cover. In relatively weakly stratified, brackish Shira Lake, the depth of chemocline varied between winters, so that light intensity for purple sulphur bacteria inhabiting this zone differed. In Shira Lake, increased transparency of mixolimnion in winter, high chemocline position and absence of snow resulted in light intensity and biomass of purple sulphur bacteria exceeding the summer values in the chemocline of the lake. We could monitor snow cover at the lake surface using remote sensing and therefore estimate dynamics and amount of light under ice and its availability for phototrophic organisms. In Shunet Lake, the light intensities in the chemocline and biomasses of purple sulphur bacteria were always lower in winter than in summer, but the biomasses of green sulphur bacteria were similar. В© Springer Science+Business Media B.V. 2009.

Scopus
Держатели документа:
Institute of Biophysics of Siberian Branch of Russian Academy of Sciences, Akademgorodok 50-50, 660036 Krasnoyarsk, Russian Federation
Siberian Federal University, Svobodny 79, 660071 Krasnoyarsk, Russian Federation
Center for Limnology, The Netherlands Institute of Ecology, Nieuwersluis, Netherlands : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Rogozin, D.Y.; Zykov, V.V.; Chernetsky, M.Y.; Degermendzhy, A.G.; Gulati, R.D.

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10.

Fine stratified distribution of Gammarus lacustris sars (Crustacea: Amphipoda) in the pelagic zone of the meromictic Lake Shira (Khakassia, Russia) / A. P. Tolomeyev, E. S. Zadereev, A. G. Degermendzhy // Doklady Biochemistry and Biophysics. - 2006. - Vol. 411, Is. 1. - P346-348, DOI 10.1134/S1607672906060068 . - ISSN 1607-6729
Кл.слова (ненормированные):
fresh water -- animal -- article -- Crustacea -- demography -- ecosystem -- physiology -- population dynamics -- Animals -- Crustacea -- Demography -- Ecosystem -- Fresh Water -- Population Dynamics -- Amphipoda -- Crustacea -- Gammarus -- Gammarus lacustris

Scopus
Держатели документа:
Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Tolomeyev, A.P.; Zadereev, E.S.; Degermendzhy, A.G.

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11.

The "quantization" of sensitivity coefficients is preserved in microbial populations heterogeneous with respect to growth rate and age / V. M. Nekrasov, A. V. Chernychev, A. G. Degermendzhy // Doklady Biological Sciences. - 2006. - Vol. 406, Is. 1-6. - P91-93, DOI 10.1134/S0012496606010261 . - ISSN 0012-4966
Кл.слова (ненормированные):
algorithm -- article -- bacterium -- biodiversity -- growth, development and aging -- population dynamics -- theoretical model -- time -- Algorithms -- Bacteria -- Biodiversity -- Models, Theoretical -- Population Dynamics -- Time Factors

Scopus
Держатели документа:
Institute of Chemical Kinetics and Combustion, Siberian Division, Russian Academy of Sciences, Institutskaya ul. 3, Novosibirsk, 630090, Russian Federation
Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Nekrasov, V.M.; Chernychev, A.V.; Degermendzhy, A.G.

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12.

Distribution and resorption of polymeric microparticles in visceral organs of laboratory animals after intravenous injection / E. I. Shishatskaya [et al.] // Bulletin of Experimental Biology and Medicine. - 2009. - Vol. 148, Is. 5. - P789-793, DOI 10.1007/s10517-010-0817-3 . - ISSN 0007-4888
Кл.слова (ненормированные):
14C -- Intravenous injection -- Microparticles -- Resorbable polyhydroxybutyrate -- Visceral tissues -- carbon 14 -- microsphere -- polyhydroxyaminobutyric acid -- polymer -- unclassified drug -- animal experiment -- animal tissue -- article -- biocompatibility -- biodegradability -- body growth -- controlled drug release -- controlled study -- degradation kinetics -- drug delivery system -- drug dosage form -- experimental animal -- female -- liver parenchyma -- molecular weight -- nonhuman -- particle size -- physical development -- radioactivity -- rat -- spleen -- tissue distribution -- tissue structure -- Animals -- Animals, Laboratory -- Carbon Radioisotopes -- Female -- Injections, Intravenous -- Particle Size -- Polymers -- Rats -- Rats, Wistar -- Tissue Distribution -- Viscera -- Animalia
Аннотация: Microparticles obtained by using 14C-labeled resorbable hydroxyaminobutyric acid polymer were injected into the caudal vein of laboratory animals without negative aftereffects for their growth and development and without changes in the macro- and microstructure of organs and tissues. The distribution of microparticles in the viscera and the dynamics of accumulation of carbon-containing polymer degradation products in the viscera were studied. The main targets for the particles are liver tissues, as well as renal and splenic tissues. The polymeric matrix of the microparticles is most actively destroyed in the spleen and liver. The presence of high-molecular- weight polymeric matrix in organs indicates the integrity of microparticles and the possibility of long-term (up to 12 weeks) functioning of polymeric particles in vivo. В© 2009 Springer Science+Business Media, Inc.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Division of Russian Academy of Sciences, Krasnoyarsk, Russian Federation
Institute of Basic Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Shishatskaya, E.I.; Goreva, A.V.; Voinova, O.N.; Kalacheva, G.S.; Volova, T.G.

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13.

Microbial polymers as a degradable carrier for pesticide delivery / O. N. Voinova [et al.] // Applied Biochemistry and Microbiology. - 2009. - Vol. 45, Is. 4. - P384-388, DOI 10.1134/S0003683809040061 . - ISSN 0003-6838
Аннотация: The possibility of use of polyhydroxyalkanoates (PHAs), biodegradable microbial polyesters, as a carrier for pesticides (?-hexachlorcyclohexane and lindane) for targeted and controlled delivery of these compounds to soil was investigated. The kinetics of polymer degradation and the dynamics of pesticide release from the extended-release formulations was studied. It is shown that pesticides embedded in a degradable polymer (PHA) carrier are released gradually and slowly, without surges, as the polymer is degraded by the soil micro-flora. The microbial soil component actively responded to the addition of the polymer as an additional nutrient substrate: the latter was degraded and then utilized. The rate of the pesticide release to the soil can be regulated by varying the polymer-pesticide ratio. В© 2009 Pleiades Publishing, Ltd.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036, Russian Federation
Siberian Federal University, Krasnoyarsk, 660041, Russian Federation
Institute of Forestry, Siberian Branch Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Voinova, O.N.; Kalacheva, G.S.; Grodnitskaya, I.D.; Volova, T.G.

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14.

Degradation of polyhydroxyalkanoates in eutrophic reservoir / T. G. Volova [et al.] // Polymer Degradation and Stability. - 2007. - Vol. 92, Is. 4. - P580-586, DOI 10.1016/j.polymdegradstab.2007.01.011 . - ISSN 0141-3910
Кл.слова (ненормированные):
16S rDNA -- Degradation -- DGGE -- Polyhydroxyalkanoates -- Reservoir -- Biodegradation -- Climate change -- Ecosystems -- Eutrophication -- Genetic engineering -- Physical chemistry -- Eutrophic reservoir -- Phylogenetic analysis -- Physicochemical properties -- Polyhydroxyalkanoates -- Organic polymers
Аннотация: During the summers of 1999-2001 the dynamics of polyhydroxyalkanoate degradation in a small recreational eutrophic reservoir was studied experimentally. It has been shown that biodegradation of polyhydroxyalkanoates in the environment is determined by the structure and physicochemical properties of the polymer and by local weather conditions, which influence the state of the aquatic ecosystem. Species (clones) of bacteria able to utilize polyhydroxyalkanoates in the reservoir were identified using molecular phylogenetic analysis of 16S rRNA genes. В© 2007 Elsevier Ltd. All rights reserved.

Scopus
Держатели документа:
Siberian Federal University, Svobodny av. 79, Krasnoyarsk, 660041, Russian Federation
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Volova, T.G.; Gladyshev, M.I.; Trusova, M.Y.; Zhila, N.O.

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15.

Degradation of polyhydroxyalkanoates and the composition of microbial destructors under natural conditions / T. G. Volova [et al.] // Microbiology. - 2006. - Vol. 75, Is. 5. - P593-598, DOI 10.1134/S0026261706050092 . - ISSN 0026-2617
Кл.слова (ненормированные):
16S rRNA -- Biodegradation -- Identification -- Polyhydroxyalkanoates -- Bacteria (microorganisms)
Аннотация: The degradation dynamics of polyhydroxyalkanoates of different composition has been studied in an eutrophic storage reservoir for two seasons. It has been shown that the biodegradation of polymers under natural conditions depends not only on their structure and physicochemical properties but also, to a great extent, on a complex of weather-climatic conditions affecting the state of the reservoir ecosystem. The molecular genetic analysis of 16S rRNA has revealed bacterial species (clones) probably involved in the degradation of polyhydroxyalkanoates in a model storage reservoir. В© Nauka/Interperiodica 2006.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Volova, T.G.; Gladyshev, M.I.; Trusova, M.Yu.; Zhila, N.O.

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16.

Dynamics of activity of the key enzymes of polyhydroxyalkanoate metabolism in Ralstonia eutropha B5786 / T. G. Volova [et al.] // Applied Biochemistry and Microbiology. - 2004. - Vol. 40, Is. 2. - P170-177, DOI 10.1023/B:ABIM.0000018921.04863.d5 . - ISSN 0003-6838
Кл.слова (ненормированные):
acetyl coenzyme A acyltransferase -- bacterial enzyme -- carbon -- carbon dioxide -- fructose -- hydrogen -- hydroxybutyrate dehydrogenase -- oxidoreductase -- poly(3 hydroxybutyric acid) -- polyhydroxyalkanoic acid -- synthetase -- article -- bacterial metabolism -- carbon source -- catalysis -- controlled study -- degradation -- depolymerization -- enzyme activity -- enzyme analysis -- molecular dynamics -- nonhuman -- protein function -- Ralstonia eutropha -- recording -- statistical significance -- synthesis -- Bacteria (microorganisms) -- Ralstonia -- Wautersia eutropha
Аннотация: The dynamics of accumulation of polyhydroxybutyrate (PHB) and the activities of key enzymes of PHB metabolism (?-ketothiolase, acetoacetyl-CoA reductase, PHB synthase, D-hydroxybutyrate dehydrogenase, and PHB depolymerase) in the hydrogen bacterium Ralstonia eutropha B5786 were studied under various conditions of carbon nutrition and substrate availability. The highest activities of ?-ketothiolase, acetoacetyl-CoA reductase, and PHB synthase were recorded during acceleration of PHB synthesis. The activities of enzymes catalyzing PHB depolymerization (PHB depolymerase and D-hydroxybutyrate dehydrogenase) were low, being expressed only upon stimulated endogenous PHB degradation. The change of carbon source (CO2 or fructose) did not affect the time course of the enzyme activity significantly.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Volova, T.G.; Kalacheva, G.S.; Gorbunova, O.V.; Zhila, N.O.

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17.

Dynamics of activity of the key enzymes of polyhydroxyalkanoate metabolism in Ralstonia eutropha / T. G. Volova [и др.] // Prikladnaia biokhimiia i mikrobiologiia. - 2004. - Vol. 40, Is. 2. - С. 201-209 . - ISSN 0555-1099
Кл.слова (ненормированные):
acetoacetyl coenzyme a reductase -- acetoacetyl-CoA reductase -- acetyl coenzyme A acyltransferase -- acyltransferase -- alcohol dehydrogenase -- carboxylesterase -- hydroxybutyrate dehydrogenase -- hydroxybutyric acid -- poly(3 hydroxyalkanoic acid) depolymerase -- poly(3-hydroxyalkanoic acid) depolymerase -- poly(3-hydroxyalkanoic acid) synthase -- polyhydroxyalkanoate synthase -- polymer -- article -- chemistry -- comparative study -- culture medium -- enzymology -- growth, development and aging -- metabolism -- Wautersia eutropha -- Acetyl-CoA C-Acyltransferase -- Acyltransferases -- Alcohol Oxidoreductases -- Carboxylic Ester Hydrolases -- Culture Media -- Cupriavidus necator -- Hydroxybutyrate Dehydrogenase -- Hydroxybutyrates -- Polymers
Аннотация: The dynamics of accumulation of polyhydroxybutyrate (PHB) and the activities of the key enzymes of PHB metabolism (beta-ketothiolase, acetoacetyl-CoA reductase, PHA synthase, D-hydroxybutyrate dehydrogenase, and PHA depolymerase) in the hydrogen bacterium Ralstonia eutropha B5786 were studied under various conditions of carbon nutrition and substrate availability. The highest activities of beta-ketothiolase, acetoacetyl-CoA reductase, and PHA synthase were recorded at the stage of acceleration of PHB synthesis. The activities of enzymes catalyzing PHB depolymerization (PHB depolymerase and D-hydroxybutyrate dehydrogenase) were low, being expressed only at stimulated endogenous PHB degradation. The change of carbon source (CO2 or fructose) did not cause any marked changes in the time course of enzyme activity.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036 Russia. : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Volova, T.G.; Kalacheva, G.S.; Gorbunova, O.V.; Zhila, N.O.

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18.

Seasonal features of consumption of lysine by uncultivated bacterial plankton of Eutrophic water reservoir / M. Y. Trusova, O. V. Kolmakova, M. I. Gladyshev // Contemporary Problems of Ecology. - 2012. - Vol. 5, Is. 4. - P391-398, DOI 10.1134/S1995425512040154 . - ISSN 1995-4255
Кл.слова (ненормированные):
16S ribosomal RNA -- biogeochemical function -- denaturing gradient gel electrophoresis -- eutrophic water reservoir -- lysine -- microecosystem (MES) -- uncultivated bacterial plankton -- amino acid -- bacterioplankton -- bacterium -- biogeochemistry -- electrokinesis -- eutrophication -- laboratory method -- microbial community -- polymerase chain reaction -- reservoir -- seasonal variation -- specialization -- Bacteria (microorganisms)
Аннотация: Dynamics of bacterial plankton community of eutrophic water reservoir in laboratory microecosystems with amino acid lysine was studied using PCR-DGGE technique. The addition of lysine to the microecosystems resulted in changes in the composition of the bacterial plankton in summer; in particular, a number of Lys1 and Lys2 species (genotypes) that consume this amino acid grew fast in the bacterial community. The plank tonic bacterial communities did not respond to the addition of lysine in spring and late summer. The obtained data confirm the hypothesis for the narrow specialization of bacterial plankton species to the consumption of individual organic substances. В© 2012 Pleiades Publishing, Ltd.

Scopus
Держатели документа:
Institute of Biophysics of Siberian Branch of Russian Academy of Sciences, Akademgorodok 50-50, Krasnoyarsk 660036, Russian Federation
Siberian Federal University, Svobodnii prosp. 79, Krasnoyarsk 660041, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Trusova, M.Y.; Kolmakova, O.V.; Gladyshev, M.I.

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19.

Spatial distribution of resting stages (akinetes) of the cyanobacteria Anabaena flos-aquae in sediments and its influence on pelagic populations / E. S. Kravchuk, E. A. Ivanova, M. I. Gladyshev // Marine and Freshwater Research. - 2011. - Vol. 62, Is. 5. - P450-461, DOI 10.1071/MF10256 . - ISSN 1323-1650
Кл.слова (ненормированные):
cyanobacterial blooms -- harmful algae -- reservoir -- resting stages -- sediment management -- water quality -- abundance -- bioaccumulation -- biomass -- cyanobacterium -- environmental factor -- experimental study -- green alga -- inoculation -- littoral environment -- macrophyte -- pelagic environment -- phytoplankton -- population structure -- qualitative analysis -- recruitment (population dynamics) -- reservoir -- seasonal variation -- sediment analysis -- silt -- spatial distribution -- vertical distribution -- water quality -- Siberia -- algae -- Anabaena flos-aquae -- Cyanobacteria
Аннотация: Recruitment of pelagic populations of cyanobacteria from littoral bottom sediments is assumed to be one of the key factors for the development of harmful blooms. Therefore, it is necessary to obtain more information on the possible factors influencing the spatial distribution of the resting stages in littoral bottom sediments. To test the hypothesis that akinete abundances in littoral bottom sediments are associated with silt and the presence of higher water plants, we sampled spatial and vertical distribution and seasonal dynamics of akinetes of cyanobacterium Anabaena flos-aquae in a small Siberian reservoir. We found that akinetes accumulate in silt at stations located in macrophyte beds. Two experiments were carried out to test if there is relationship between size of inoculum and size of the pelagic population of A. flos-aquae. The proportion of A. flos-aquae in total phytoplankton biomass depended on the initial abundance of akinetes in bottom sediments. The model based on laboratory experiments gave good qualitative description of the field data. These findings can be useful to predict the location of the main akinete accumulation zones in a water body and plan the removal of sediment to prevent the cyanobacterial blooms. В© CSIRO 2011.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036, Russian Federation
Siberian Federal University, Svobodny av. 79, Krasnoyarsk, 660041, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Kravchuk, E.S.; Ivanova, E.A.; Gladyshev, M.I.

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20.

Seasonal distribution and fatty acid composition of littoral microalgae in the Yenisei River / N. N. Sushchik [et al.] // Journal of Applied Phycology. - 2010. - Vol. 22, Is. 1. - P11-24, DOI 10.1007/s10811-009-9418-9 . - ISSN 0921-8971
Кл.слова (ненормированные):
Fatty acids -- Riverine microalgae -- Taxa composition -- Temperature adaptations -- algae -- Bacillariophyta -- Chlorophyta -- Cyanobacteria
Аннотация: We studied fatty acid (FA) composition of littoral microalgae in the fast-flowing oligotrophic river, the Yenisei, Siberia, monthly for 3 years. Seasonal dynamics of species composition had similar patterns in all the studied years. In springs, a pronounced dominance of filamentous green algae occurred, in summer and autumn diatoms were abundant, and in late autumn and winter epilithic biofilms consisted primarily of cyanobacteria and detritus. In general, FA composition of the algal periphytic community was dominated by 16:0, 16:1?7, 20:5?3, 14:0, and 18:3?3 throughout the studied period. Several groups of FAs, which had peculiar seasonal dynamics, were differentiated by statistical analysis based on a method of correlation graphs. The seasonal changes in FA composition could be partly explained by the seasonal succession of species composition of the community. Besides, we found that populations of both diatom and green algae grown in summer at a higher water temperature were lower in polyunsaturated fatty acids than those in spring, at a lower temperature. Hence, we suppose that the regular seasonal dynamics of FA composition of the studied littoral microalgae was driven both by changes in species composition and by temperature adaptations of the algal populations. The highest content of essential polyunsaturated FAs, eicosapentaenoic and docosahexaenoic acids, in the spring "psychrophilic" populations of diatoms could make them of the higher nutritive value for zoobenthic primary consumers. В© Springer Science+Business Media B.V. 2009.

Scopus
Держатели документа:
Institute of Biophysics of Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk 660036, Russian Federation
Siberian Federal University, Svobodny av. 79, Krasnoyarsk 660041, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Sushchik, N.N.; Gladyshev, M.I.; Ivanova, E.A.; Kravchuk, E.S.

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