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Sediments of the Yenisei River: Monitoring of radionuclide levels and estimation of sedimentation rates / A. Bolsunovsky, D. Dementyev // IAHS-AISH Publication. - 2010. - Vol. 337: Symposium on Sediment Dynamics for a Changing Future (14 June 2010 through 18 June 2010, Warsaw) Conference code: 84220. - P143-148
Кл.слова (ненормированные):
Artificial and natural radionuclides -- Dating methods -- River sediments -- Sedimentation rates -- Yenisei river -- Dating methods -- Natural radionuclides -- River sediments -- Sedimentation rates -- Yenisei river -- Anoxic sediments -- Cesium -- Europium -- Lead -- Nuclear energy -- Nuclear weapons -- Plutonium -- Radioisotopes -- River pollution -- Sedimentation -- Sedimentology -- Strontium -- Uranium -- Rivers -- cesium isotope -- cobalt isotope -- europium -- fluvial deposit -- plutonium isotope -- radioactive pollution -- radioactive waste -- radionuclide -- sampling -- sediment core -- sediment pollution -- sedimentation rate -- Krasnoyarsk [Russian Federation] -- Russian Federation -- Yenisei River
Аннотация: The Yenisei River, one of the largest rivers in the world, is contaminated with artificial radionuclides released by a Russian nuclear facility producing weapon-grade plutonium, which has been in operation for many years. Examination of Yenisei River sediment samples revealed the presence of artificial radionuclides typical of radioactive discharge from the Mining-and-Chemical- Combine (MCC) nuclear facility: isotopes of europium ( 152Eu, 154Eu, and 155Eu), caesium ( 137Cs and 134Cs), 60Co, 90Sr, and transuranium elements. Maximum radionuclide concentrations in sediments remained high as far as 240 km downstream of the MCC. In sediment cores collected upstream of the MCC, ?-spectrometric measurements registered only one artificial radionuclide, 137Cs, with a maximum activity of approx. 8 Bq kg -1 dry mass. Sediments of the Yenisei River also contain natural radionuclides. Sedimentation rates in several sections of the Yenisei River were determined using, different approaches: the 210Pb dating method and the ratios of artificial radionuclides - 137Cs/ 60Co and 152Eu/ 154Eu. With increasing distance downstream of the city of Krasnoyarsk, sedimentation rates increased from 0.88 cm year -1 to 1.30-1.51 cm year -1. Copyright В© 2010 IAHS Press.

Scopus
Держатели документа:
Institute of Biophysics SB RAS, Akademgorodok, 660036, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Bolsunovsky, A.; Dementyev, D.

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Principle of the worst scenario in the modelling past and future of biosphere dynamics / S. I. Bartsev, A. G. Degermendzhi, D. V. Erokhin // Ecological Modelling. - 2008. - Vol. 216, Is. 2. - P160-171, DOI 10.1016/j.ecolmodel.2008.03.002 . - ISSN 0304-3800
Кл.слова (ненормированные):
Irreversible biosphere changes -- Minimal model of biosphere -- The worst scenario principle -- Biospherics -- agricultural land -- anthropogenic effect -- atmosphere-biosphere interaction -- carbon dioxide -- deforestation -- Little Ice Age -- numerical model -- Eurasia -- Europe
Аннотация: The "biosphere-climate" system is subjected to different influences (influx of anthropogenic CO2 and pollutants, deforestation, harmful land management, biological species depopulation, etc.). Therefore, the vital question arises: "Can these influences lead to irreversible negative changes in the climate-biosphere system or a global ecological catastrophe?" The possibility of irreversible changes may be not very high, but one cannot ignore it. So the main aim of our investigation is to evaluate possible consequences of human impact on the biosphere focusing on irreversible changes of it. Traditional mathematical complicated models describe the biosphere in great detail, but the large number of equations and parameters leads to accumulation of uncertainties in the forecast due to inevitable uncertainties of experimental estimations of model parameters. An approach based on the principle of the worst scenario was proposed. Minimization of mathematical model with respect to this principle is conducted to study limiting (but possible) versions of models in which the contribution of the possible compensatory and smoothing mechanisms is minimal. Namely the most unfavorable scenarios (corresponding to the values of parameters at the boundaries of confidence interval) have to be considered in estimating consequences of anthropogenic impact. One of the fastest CO2 releasing mechanisms, based on the positive feedback effect, was considered in the context of the worst scenario principle. The family of simple mathematical models was created for biosphere dynamics representation on different timescales. The main result of the investigation consists in confirmation of the possibility of negative and irreversible changes in the "biosphere-climate" system, caused by amplification of the positive feedback: "anthropogenic emission of CO2 - temperature increase - additional CO2 emission due to decomposition of soil organics". Crucial parameters of models, responsible for avalanche-like biosphere changes, are determined. A realizability of hypotheses on anthropogenic causes of Little Ice Age was estimated by corresponding minimal model. Model were used to show the feasibility of the mechanism describing the changing of agricultural field species into indigenous forests in Europe during the Plague, which led to CO2 decrease and temperature fall. В© 2008 Elsevier B.V. All rights reserved.

Scopus
Держатели документа:
Institute of Biophysics SB RAS, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Bartsev, S.I.; Degermendzhi, A.G.; Erokhin, D.V.

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Modelling the effect of planktivorous fish removal in a reservoir on the biomass of cyanobacteria / I. G. Prokopkin, V. G. Gubanov, M. I. Gladyshev // Ecological Modelling. - 2006. - Vol. 190, Is. 3-4. - P419-431, DOI 10.1016/j.ecolmodel.2005.05.011 . - ISSN 0304-3800
Кл.слова (ненормированные):
Biomanipulation -- Cyanobacteria -- Ecological mathematical model -- Viable gut passage -- Bacteria -- Biodiversity -- Biomass -- Ecosystems -- Rivers -- Cyanobacteria -- Fishes -- Viable gut passage -- Ecology -- algal bloom -- community dynamics -- modeling -- planktivore -- removal experiment -- reservoir -- Bugach Reservoir -- Eastern Hemisphere -- Eurasia -- Krasnoyarsk [Russian Federation] -- Russian Federation -- World -- Anabaena -- Carassius auratus -- Carassius carassius -- Cyanobacteria -- Cyprinus carpio -- Daphnia -- Microcystis
Аннотация: In 2002, a "top-down" biomanipulation (reduction of biomass of planktivorous fish Carassius auratus) had been successfully carried out in a small reservoir of the river Bugach (Krasnoyarsk, Russia), after which the cyanobacterial blooming ceased. However, the reservoir ecosystem was absolutely free of Daphnia - the main link of trophic cascade. As supposed, the reduction of blooming was the result of suppression of a direct stimulation effect of planktivorous fish on cyanobacteria, revealed earlier in laboratory experiments. The question arose as to whether the effect of stimulation of cyanobacteria revealed in laboratory may lead to the changes in biomass of cyanobacteria in the reservoir, observed after the biomanipulation. To test this supposition, a mathematical model describing growth of cyanobacteria in the reservoir was developed. The modelling results and field data on biomass of cyanobacteria in summer closely coincided. Modelling calculations showed that direct influence of planktivorous fish could cause the second summer peak of water blooming by Microcystis. On the contrary, removal of crucian carp from the reservoir will not affect the level of water blooming caused by cyanobacteria Anabaena, as this species' growth is not stimulated by fish. В© 2005 Elsevier B.V. All rights reserved.

Scopus
Держатели документа:
Institute of Biophysics, Akademgorodok, 660036 Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Prokopkin, I.G.; Gubanov, V.G.; Gladyshev, M.I.

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Content of metals in compartments of ecosystem of a Siberian pond / M. I. Gladyshev [et al.] // Archives of Environmental Contamination and Toxicology. - 2001. - Vol. 41, Is. 2. - P157-162, DOI 10.1007/s002440010233 . - ISSN 0090-4341
Кл.слова (ненормированные):
aluminum -- cadmium -- calcium -- chromium -- copper -- heavy metal -- iron -- lead -- magnesium -- manganese -- nickel -- potassium -- sodium -- zinc -- aquatic ecosystem -- biological uptake -- heavy metal -- pond -- article -- bioaccumulation -- ecosystem -- fish -- nonhuman -- pond -- priority journal -- Russian Federation -- sediment -- soil pollution -- water contamination -- Animals -- Ecosystem -- Environmental Monitoring -- Fishes -- Geologic Sediments -- Invertebrates -- Metals, Heavy -- Plants -- Water Pollutants -- Russian Federation
Аннотация: During three field seasons (June-September) of 1997-99 contents of Na, K, Ca, Mg, Fe, Mn, Zn, Cu, Al, Cr, Ni, Cd, and Pb were determined in compartments of ecosystem (surrounding soils, bottom sediments, water, zoobenthos, macrophytes, and fish) of a fish and recreation pond situated at the edge of Krasnoyarsk City (Siberia, Russia). Contents of most parts of metals in soils, water, and macrophytes significantly correlated with each other. As concluded, their contents were determined by natural, general, geochemical peculiarities of the region. Heavy metals, contents of which were higher than federal upper limits of concentration, were revealed. In muscles of fish with different feeding spectra - crucian and perch - concentrations of some metals differed significantly; correlation graphs for metals also had different structures. Comparison of our data with those on diverse aquatic ecosystems of Siberia, Europe, North America, and China published in the last decade was carried out. It was concluded that a distribution of heavy metals in the compartments of an aquatic ecosystem presently have to be determined for each particular water body until general regularities are discovered.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036, Russian Federation
Krasnoyarsk State Agricultural University, Mira av., 88, Krasnoyarsk, 660049, Russian Federation
Krasnoyarsk State University, Svobodny av., 79, Krasnoyarsk, 660042, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Gladyshev, M.I.; Gribovskaya, I.V.; Moskvicheva, A.V.; Muchkina, E.Y.; Chuprov, S.M.; Ivanova, E.A.

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Crystal structure of a Ca2+-discharged photoprotein - Implications for mechanisms of the calcium trigger and bioluminescence [Text] / L. . Deng [et al.] // J. Biol. Chem. - 2004. - Vol. 279, Is. 32. - P33647-33652, DOI 10.1074/jbc.M402427200. - Cited References: 31 . - ISSN 0021-9258

РУБ Biochemistry & Molecular Biology
Рубрики:
VIOLET BIOLUMINESCENCE
   ANGSTROM RESOLUTION
   ELECTRON-DENSITY
   W92F OBELIN
   AEQUORIN
   PROTEINS
   LIGHT
   SEQUENCE
   BINDING
   COELENTERAZINE
Аннотация: Ca2+-regulated photoproteins are members of the EF-hand calcium-binding protein family. The addition of Ca2+ produces a blue bioluminescence by triggering a decarboxylation reaction of protein-bound hydroperoxycoelenterazine to form the product, coelenteramide, in an excited state. Based on the spatial structures of aequorin and several obelins, we have postulated mechanisms for the Ca2+ trigger and for generation of the different excited states that are the origin of the different colors of bioluminescence. Here we report the crystal structure of the Ca2+-discharged photoprotein obelin at 1.96-Angstrom resolution. The results lend support to the proposed mechanisms and provide new structural insight into details of these processes. Global conformational changes caused by Ca2+ association are typical of the class of calcium signal modulators within the EF-hand protein superfamily. Accommodation of the Ca2+ ions into the loops of the EF-hands is seen to propagate into the active site of the protein now occupied by the coelenteramide where there is a significant repositioning and flipping of the His-175 imidazole ring as crucially required in the trigger hypothesis. Also the H-bonding between His-22 and the coelenterazine found in the active photoprotein is preserved at the equivalent position of coelenteramide, confirming the proposed rapid excited state proton transfer that would lead to the excited state of the phenolate ion pair, which is responsible for the blue emission of bioluminescence.

Держатели документа:
Univ Georgia, Dept Biochem & Mol Biol, Athens, GA 30602 USA
Univ Georgia, Dept Chem, Athens, GA 30602 USA
Russian Acad Sci, Inst Biophys, Siberian Branch, Krasnoyarsk 660036, Russia
ИБФ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Deng, L...; Markova, S.V.; Vysotski, E.S.; Liu, Z.J.; Lee, J...; Rose, J...; Wang, B.C.

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INVESTIGATION OF WHOLE-BLOOD LEUKOCYTE FUNCTIONAL-ACTIVITY WITH THE USE OF CHEMILUMINESCENCE DURING PLASMAPHERESIS [Текст] / K. I. PUKHOV [и др.] // Gematol. Transfuziol. - 1991. - Vol. 36, Is. 9. - P. 19-22. - Cited References: 0 . - ISSN 0234-5730

РУБ Hematology

Аннотация: Repeated plasmapheresis sessions attended by chemiluminescent evaluation of cellular immunity parameters lead to the recovery of the whole blood leucocyte activity in patients with unhealing gastroduodenal ulcers. The kinetic analysis of the cellular chemiluminescent response has shown that, among all the components of the plasmapheresis procedure, hemorrhage is the most important factor increasing the functional activity of phagocytes.

WOS : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
PUKHOV, K.I.; YAKHNINA, E.I.; MAKARSKAYA, G.V.; PUKHOVA, Y.I.; SAVCHENKO, V.G.

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REDUNDANCY OF EUKARYOTIC DNA DECREASES AFTER EXCISION OF INTRONS [Text] / T. G. POPOVA, M. G. SADOVSKII // Mol. Biol. - 1995. - Vol. 29, Is. 3. - P. 281-285. - Cited References: 23 . - ISSN 0026-8933

РУБ Biochemistry & Molecular Biology
Рубрики:
SEQUENCES
Кл.слова (ненормированные):
EXON -- INTRON -- WORD -- FREQUENCY -- REDUNDANCY
Аннотация: The article is devoted to analysis of the internal gene structure with respect to redundancy of exons and introns. Human genes with precisely determined exon-intron structure were studied. Redundancy of each exon and intron within a certain gene was measured. In the analyzed human genes, introns were more redundant than exons. Redundancy was determined as the minimal length of a word (oligonucleotide) that is present as a single copy within the nucleotide sequence studied. Mechanisms are discussed that lead to disturbances in the relationships found between the redundancies of exons and introns.

WOS : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
POPOVA, T.G.; SADOVSKII, M.G.

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Trace elements exchange in experimental closed life support systems [Text] / I. V. Gribovskaya, V. Y. Rygalov ; ed. ya, IV Gribovs // SIXTH EUROPEAN SYMPOSIUM ON SPACE ENVIRONMENTAL CONTROL SYSTEMS, VOLS 1 AND 2. Ser. ESA SPECIAL PUBLICATIONS : EUROPEAN SPACE AGENCY, 1997. - Vol. 400: 6th European Symposium on Space Environmental Control Systems (MAY 20-22, 1997, NOORDWIJK, NETHERLANDS). - P. 859-862. - Cited References: 0 . - ISBN 0379-6566. - ISBN 92-9092-283-4

РУБ Engineering, Aerospace

Аннотация: Measurements of trace elements incoming and exiting ''Bios-3'' biological-engineering life support system evidence presence of a source of these elements inside the system. This source is, most probably, structural units (steel walls, hose rubber, plastic coatings), catalysts of the thermal catalytic incinerator, expanded clay aggregate mechanically fixing plants and so on. The trace elements are received by the nutrient solutions and build up in the plant biomass. As a consequence the crew may receive elevated doses of such trace elements as aluminum, lead, nickel, chromium. To reduce income of trace elements to LSS requires thorough selection and preliminary treatment of structural materials with reduced desorption capacities and running-in of the system in idle mode prior to exploitation. This mode involves operation of the engineering part of the system (without plants and humans, but with nutrient solutions) for several months.

WOS : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Gribovskaya, I.V.; Rygalov, V.Y.; Gribovs, ya, IV \ed.\

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Utilization of substrate when growing oyster mushroom Pleurotus florida Fovose [Текст] / N. S. Manukovsky, V. S. Kovalev, I. V. Gribovskaya // Mikol. Fitopatol. - 1998. - Vol. 32, Is. 6. - P. 43-46. - Cited References: 8 . - ISSN 0026-3648

РУБ Mycology

Аннотация: Content of biogenic elements in the residual substrate after growing of oyster mushroom Pleurotus florida Fovose on wheat straw was studied. It was calculated, that masses of sulphur, calcium and magnesium in the residual substrate were more than 90 % of their initial masses in wheat straw used for growing. Therefore the accumulation of these elements in the substrate under its repeated recycling for mushroom growing is possible. On the contrary the lack of phosphorus is expected. After washing content of all biogenic elements tested in residual substrate, except for calcium, was lower than their content in wheat straw. The decreasing of mushroom yield under increasing rate of residual substrate in its mixture with wheat straw was shown. Washing of residual substrate did not lead to decreasing of yield.

WOS
Держатели документа:
Russian Acad Sci, Inst Biophys, Krasnoyarsk, Russia
ИБФ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Manukovsky, N.S.; Kovalev, V.S.; Gribovskaya, I.V.

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10.

Content of metals in compartments of ecosystem of a Siberian pond [Text] / M. I. Gladyshev [et al.] // Arch. Environ. Contam. Toxicol. - 2001. - Vol. 41, Is. 2. - P. 157-162. - Cited References: 26 . - ISSN 0090-4341

РУБ Environmental Sciences + Toxicology
Рубрики:
CHIRONOMUS-RIPARIUS MEIGEN
   NELSON RIVER SYSTEM
   AQUATIC MACROPHYTES
   LARVAE DIPTERA
   HEAVY-METAL
   COPPER
   LEAD
   SEDIMENTS
   CADMIUM
   MANITOBA
Аннотация: During three field seasons (June-September) of 1997-99 contents of Na, K, Ca, Mg, Fe, Mn, Zn, Cu, Al, Cr, Ni, Cd, and Pb were determined in compartments of ecosystem (surrounding soils, bottom sediments, water, zoobenthos, macrophytes, and fish) of a fish and recreation pond situated at the edge of Krasnoyarsk City (Siberia, Russia). Contents of most parts of metals in soils, water, and macrophytes significantly correlated with each other. As concluded, their contents were determined by natural, general, geochemical peculiarities of the region. Heavy metals, contents of which were higher than federal upper limits of concentration, were revealed. In muscles of fish with different feeding spectra-crucian and perch-concentrations of some metals differed significantly; correlation graphs for metals also had different structures. Comparison of our data with those on diverse aquatic ecosystems of Siberia, Europe, North America, and China published in the last decade was carried out. It was concluded that a distribution of heavy metals in the compartments of an aquatic ecosystem presently have to be determined for each particular water body until general regularities are discovered.

WOS
Держатели документа:
Russian Acad Sci, Inst Biophys, Siberian Branch, Krasnoyarsk 660036, Russia
Krasnoyarsk State Agr Univ, Krasnoyarsk 660049, Russia
Krasnoyarsk State Univ, Krasnoyarsk 660042, Russia
ИБФ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Gladyshev, M.I.; Gribovskaya, I.V.; Moskvicheva, A.V.; Muchkina, E.Y.; Chuprov, S.M.; Ivanova, E.A.

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11.

The general evolution of energy–matter interactions on earth: From a gas whirlwind to a technogenic civilization / N. S. Pechurkin, A. N. Shuvaev // Biophysics. - 2015. - Vol. 60, Is. 2. - P331-334, DOI 10.1134/S0006350915020153 . - ISSN 0006-3509
Кл.слова (ненормированные):
biosphere -- energy transfer -- evolution -- Animalia -- Mammalia -- Protozoa
Аннотация: An idea of the general evolution through the long-term response of the Earth to the external flow of radiant energy from the Sun is proposed. Due to the finiteness of matter on Earth, as well as on any other planet, the continuous pumping flow of radiant energy has been shown to lead to cyclization of transformations and mass transfer along the emerging gradients. The evolution of the energy–matter interaction follows the pathway of capturing and transferring more energy by a smaller quantity of matter, i.e., the pathway of the increase in the amount of energy used by each unit mass. According to this parameter, the least effective mass transfer is a simple transfer as vortices of gases along the gradients of temperature and pressure, which took place on the primary surface of the planet. Long-term natural selection towards water accumulation on the planet has played a special role in the development of the interaction between energy and matter. Phase transitions (ice, water, and vapor) and mechanical transfers are the most common energy–matter processes. Chemical transformation of substances became possible based on water cycles, cyclic transfers, and transformations and developed with time into biological transformation. This type of energy–matter interaction is the most efficient. In particular, the energy of our star is captured during photosynthesis and utilized in the most active region of its radiation spectrum. During the biological evolution of heterotrophs, a increase in the coefficient that characterizes the energy exchange intensity from protozoa to mammals by several hundred times is most illustrative. The development and current dominance of humans as the species that is most active in the capturing of energy and meaningful organization of its new flows, in particular, based on the organic debris of former biospheres, is amazing but quite natural from the energy standpoint. During the technological evolution of humankind, the energy-exchange intensity for homoiotherms (warm-blooded animals) has increased by 20 times if it is recalculated for the technological energy that is used by the average inhabitant of the Earth. Thus, the victory of our species in planetary evolution fits well into the mainstream of the general evolution through energy–matter interactions: a multiple increase in star energy has been used to transform the matter on the surface of the irradiated planet. © 2015, Pleiades Publishing, Inc.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Krasnoyarsk, Russian Federation
Institute of Engineering Physics and Radioelectronics, Siberian Federal University, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Pechurkin, N.S.; Shuvaev, A.N.

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12.

Biodegradable poly-3-hydroxybutyrate as a fertiliser carrier / T. G. Volova, S. V. Prudnikova, A. N. Boyandin // J. Sci. Food Agric. - 2016. - P4183-4193, DOI 10.1002/jsfa.7621 . - ISSN 0022-5142
Кл.слова (ненормированные):
biodegradable polymers -- controlled delivery systems -- fertilisers -- polyhydroxyakanoates
Аннотация: BACKGROUND: Increasing use of mineral fertilisers can lead to accumulation of fertilisers in soil, water and foodstuffs. One of the approaches to preventing these problems is to develop controlled release forms of fertilisers. RESULTS: Experimental formulations of the nitrogen fertiliser urea loaded in a degradable matrix of the natural polymer poly-3-hydroxybutyrate (P3HB) in the form of films, pellets and coated granules were constructed and investigated. Nitrogen release into soil occurred as the polymer was degraded, and it was dependent on the geometry of the carrier and the amount of nitrogen loaded in it, showing that nitrogen release can last for 30 days or longer and that release rates can be controlled by varying the fabrication technique employed. P3HB/urea formulations have a favourable effect on the soil microbial community. The use of embedded urea has a beneficial influence on the growth of creeping bentgrass (Agrostis stolonifera) and lettuce (Latuca sativa) and reduces removal of nitrogen with drain water. CONCLUSION: The slow-release nitrogen formulations developed in this study can be buried in soil together with seeds preventing nitrogen deficiency. The use of such slow-release formulations can decrease the amounts of chemicals in the environment and prevent their adverse effects on the biosphere. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry

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Держатели документа:
Institute of Biophysics of the Siberian Branch of the Russian Academy of Sciences, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Volova, T. G.; Prudnikova, S. V.; Boyandin, A. N.

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13.

Phylogeny of Salmonoid Fishes (Salmonoidei) Based on mtDNA COI Gene Sequences (Barcoding) / V. S. Artamonova [et al.] // Contemp. Probl. Ecol. - 2018. - Vol. 11, Is. 3. - P271-285, DOI 10.1134/S1995425518030022. - Cited References:102. - We are very grateful to colleagues who helped collect samples: E.G. Berestovskii, I.N. Bolotov, E.A. Borovikova, I.V. Vikhrev, L.A. Glushchenko, V.V. Ignatenko, D.P. Karabanov, A.P. Novoselov, V.M. Spitsyn, V.A. Shirokov, and I.L. Shchurov; employees of Trout Hatchery "Adler", the Federal Breeding and Genetic Center for Fish Culture, and Vygsky and Kemsky fish hatcheries; and residents of Barabash-Levada, Len-lu, and Chupa settlements. We also thank S.S. Alekseev for identifying sharp-snouted and blunt-snouted lenoks. This work was supported by the Russian Science Foundation, project no. 16-14-10001. . - ISSN 1995-4255. - ISSN 1995-4263

РУБ Ecology
Рубрики:
MOLECULAR DATING ANALYSIS
GROWTH-HORMONE INTRONS
SALMONIFORMES
Кл.слова (ненормированные):
evolution -- network -- molecular clock -- amino acid sequence -- reproductive -- isolation -- immobilization -- fishes
Аннотация: We have analyzed the partial sequences of the mitochondrial COI gene along with the amino acid sequences of cytochrome oxidase subunit I, encoded by this gene region, in representatives of 11 genera of salmonoid fish. For amino acid sequences, two alternative networks are constructed with outgroups represented by either Esocoidei or Osmeroidei as the supposed ancestral groups. This way, Osmeroidei appear to be closer to the salmonoid fish than Esocoidei, and their presence in the network as an outgroup explains the available data on the morphology and karyology of salmonoids much better. A number of the results of this study are fundamentally new. In particular, the slowing down of the molecular evolution of the grayling (Thymallidae) is shown. We conclude that the charr (Salvelinus) is one of the modern genera of salmonoids closest to their ancestor. The hypothesis of the phylogenetic proximity of the genera Brachymystax, Hucho, and Salmo has been confirmed. We also discuss the possibility that it is namely the changes in the amino acid sequence of cytochrome oxidase subunit I that lead to postzygotic reproductive isolation between taxa.

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Scopus
Держатели документа:
Russian Acad Sci, Severtsov Inst Ecol & Evolut, Moscow 119071, Russia.
Russian Acad Sci, Siberian Branch, Krasnoyarsk Sci Ctr, Inst Biophys, Krasnoyarsk 660036, Russia.

Доп.точки доступа:
Artamonova, V. S.; Kolmakova, O. V.; Kirillova, E. A.; Makhrov, A. A.; Russian Science Foundation [16-14-10001]

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14.

Bio-hybridization of nanobactericides with cellulose films for effective treatment against members of ESKAPE multi-drug-resistant pathogens / S. Baker [et al.] // Appl. Nanosci. - 2018. - Vol. 8, Is. 5. - P1101-1110, DOI 10.1007/s13204-018-0717-9. - Cited References:51. - Authors are thankful for Ministry of Education and Science of the Russian Federation for providing funding under the scheme of 5-100: Russian Academic Excellence Project. Authors are grateful for facilities provided by Siberian Federal University to carry out the present study. . - ISSN 2190-5509. - ISSN 2190-5517

РУБ Nanoscience & Nanotechnology
Рубрики:
SILVER NANOPARTICLES
BACTERIAL CELLULOSE
ANTIBIOTIC-RESISTANCE
Кл.слова (ненормированные):
ESKAPE -- Bio-hybridization -- Silver nanobactericides -- Phytogenic -- Bactericidal activity
Аннотация: The rapid expansion of drug-resistant pathogens has created huge global impact and development of novel antimicrobial leads is one of the top priority studies in the current scenario. The present study aims to develop bio-hybridized nanocellulose films which comprise of phytogenic silver nanobactericides. The nanobactericides were synthesized by treating 1 mM silver nitrate with aqueous extract of Chamerion angustifolium which reduced the metal salt to produce polydispersed nanobactericides which were tested against the members of ESKAPE drug-resistant communities. The synthesized silver nanobactericides were subjected to characterization with UV-visible spectra which displayed maximum absorbance at 408 nm. The bio-molecular interaction of phyto-constituents to mediate synthesis and stabilization of nanobactericides was studied with Fourier-transform infrared spectroscopy (FTIR) which depicted functional groups associated with nanobactericides. The crystalline nature was studied with X-ray diffraction (XRD) which showed Bragg's intensities at 2 theta angle which denoted (111), (200), (220), and (311) planes. The morphological characteristics of silver nanobactericides were defined with transmission electron Microscopy (TEM) image which displayed polydispersity of silver nanobactericides with size ranging from 2 to 40 nm. The synthesized nanobactericides showed a significant activity against MRSA strain with 21 mm zone of inhibition. The minimal inhibitory concentration of silver nanobactericides to inhibit the growth of test pathogens was also determined which ranged between 0.625 and 1.25 mu g/ml. The silver nanobactericides were bio-hybridized onto nanocellulose films produced by Komagataeibacter xylinus B-12068 culture strain. The films were dried to determine the mechanical properties which showed increased in Young's modulus and tensile strength in comparison with control bacterial cellulose films. Overall, the results obtained in the present investigation are promising enough to report bactericidal activity of bio-hybridized nanobactericidal films against ESKAPE. These communities are reported to cause severe threats to all forms of lives irrespective to their habitats which can lead to huge economical crisis.

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Держатели документа:
Siberian Fed Univ, Lab Biotechnol New Mat, Svobodnyy Pr 79, Krasnoyarsk 660041, Russia.
SB RAS, Krasnoyarsk Sci Ctr, Fed Res Ctr, Inst Biophys, 50-50 Akademgorodok, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, 79 Svobodny Pr, Krasnoyarsk 660041, Russia.
Siberian Fed Univ, Sch Fundamental Biol & Biotechnol, Krasnoyarsk, Russia.
Krasnoyasrk State Med Univ, Dept Microbiol, Krasnoyarsk Partizana Zheleznyaka St 1, Krasnoyarsk 660022, Russia.
SB RAS, Fed Res Ctr KSC, Kirensky Inst Phys, Akademgorodok 50,Bld 38, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Sch Petr & Nat Gas Engn, Krasnoyarsk, Russia.

Доп.точки доступа:
Baker, Syed; Volova, Tatiana; Prudnikova, Svetlana, V; Shumilova, Anna A.; Perianova, Olga, V; Zharkov, Sergey M.; Kuzmin, And Rey; Olga, Kondratenka; Bogdan, Kiryukhin; Shidlovskiy, Ivan P.; Potkina, Zoya K.; Khohlova, Olga Y.; Lobova, Tatiana, I; Ministry of Education and Science of the Russian Federation under the scheme of 5-100: Russian Academic Excellence Project

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15.

Effect of viscosity on efficiency of enzyme catalysis of bacterial luciferase coupled with lactate dehydrogenase and NAD(P)H:FMN-Oxidoreductase / O. S. Sutormin [et al.] // Mol. Cat. - 2018. - Vol. 458. - P60-66, DOI 10.1016/j.mcat.2018.08.012 . - ISSN 2468-8231
Кл.слова (ненормированные):
Bioluminescence -- Coupling of enzymes -- In vivo simulated media -- Metabolic chain -- Protein stability
Аннотация: One of the current trends of the modern biology figures out cellular enzyme behaviour. Numerous researches look more closely at the chemical composition of creating in vivo simulated media conditions. The aim of this work was to find out a thermodynamic cooperativity of enzymes in a triple-enzyme chain (lactate dehydrogenase + NAD(P)H: FMN-oxidoreductase + bacterial luciferase) under in vivo simulated condition. The thermodynamic cooperativity effects were found out based on the influence of the viscogens (glycerol and sucrose) on the thermal stability of the triple-enzyme system. The results showed that the viscogens do not lead to an increase in the thermal stability of the triple-enzyme system. In addition, organic solvents (sucrose and glycerol) added as viscous agents to the reaction medium altered the kinetics of this triple-enzyme chain, including changing the light emission decay constant (kdec) and quantum yield of luminescence (Q). Plus, sucrose was found to be more efficient in limiting the flexibility of enzymes than glycerol. The high sensitivity of the triple-enzyme system to the viscogens may be connected with a fact that lactate dehydrogenase does not bound with couple enzyme system NAD(P)H: FMN-oxidoreductase + bacterial luciferase inside the real cell. Since this approach may be used as a method to understand the real connection between enzymes in cellular multi-enzyme metabolic chains inside the luminous bacteria cell. © 2018 Elsevier B.V.

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Держатели документа:
Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russian Federation
Institute of Biophysics, Russian Academy of Sciences, Siberian Branch, Federal Research Center ‘Krasnoyarsk Science Center SB RAS’, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Sutormin, O. S.; Sukovataya, I. E.; Pande, S.; Kratasyuk, V. A.

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16.

Intraspecies variability of fatty acid content and composition of a cosmopolitan benthic invertebrate, Gammarus lacustris / O. N. Makhutova [et al.] // Inland Waters. - 2018. - Vol. 8, Is. 3. - P356-367, DOI 10.1080/20442041.2018.1487157 . - ISSN 2044-2041
Кл.слова (ненормированные):
essential polyunsaturated fatty acids -- fish -- food quality -- salinity -- temperature
Аннотация: Aquatic invertebrates are valuable dietary sources of essential polyunsaturated fatty acids, eicosapentaenoic acid (EPA, 20:5n-3) and docosahexaenoic acid (DHA, 22:6n-3), for fish. Phylogeny, diet, and various ecological factors affect the fatty acid composition of aquatic invertebrates. We focused our study on the effect of ecological factors to a cosmopolitan species inhabiting lakes that differed in salinity, temperature, and presence/absence of predators (fish). To avoid the effect of phylogeny, which strongly influences the fatty acid composition of animals, we studied several populations of one cosmopolitan benthic species, Gammarus lacustris Sars. We found that differences in fatty acid percentages of G. lacustris were mainly affected by differences in their diets. Some populations preferred dinoflagellates, cryptophytes, green algae/cyanobacteria, and bacteria; other populations selected diatoms; and still other populations consumed zooplankton or allochthonous (terrestrial) organic matter. The salinity and presence/absence of fish affected the contents of EPA and DHA in G. lacustris. Populations from saline and fishless lakes had significantly higher contents of EPA and DHA. Thus, stocking of fishless lakes dominated by G. lacustris with fish could lead to a decrease in EPA and DHA contents in the gammarids. We propose that some saline and fishless lakes could be used as a source of gammarids for aquaculture fish feeding. © 2018, © 2018 International Society of Limnology (SIL).

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Держатели документа:
Institute of Biophysics of Federal Research Center “Krasnoyarsk Science Center” of Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation
Tyumen Scientific Centre Siberian Branch, Russian Academy of Sciences, Institute of the problems of Northern development, Tyumen, Russian Federation

Доп.точки доступа:
Makhutova, O. N.; Shulepina, S. P.; Sharapova, T. A.; Kolmakova, A. A.; Glushchenko, L. A.; Kravchuk, E. S.; Gladyshev, M. I.

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17.

A model study of the effect of weather forcing on the ecology of a meromictic Siberian lake / I. G. Prokopkin, E. S. Zadereev // J. Oceanology Limnology. - 2018, DOI 10.1007/s00343-018-7329-9 . - Article in press. - ISSN 2096-5508
Кл.слова (ненормированные):
food web -- meromictic lake -- numerical model -- sensitivity analysis -- stratification -- weather forcing
Аннотация: We used a Lake Shira numerical model to estimate the response of the ecosystem of a saline meromictic lake to variations in weather parameters during the growing season. The sensitivity analysis of the model suggests that compared to other external (nutrient inflows) and internal (spring biomasses of food-web components) factors, weather parameters are among the most influential for both mixolimnetic (phyto- and zooplankton) and monimolimnetic (purple sulfur bacteria, sulfur reducing bacteria and hydrogen sulfide) food-web components. Calculations with different weather scenarios shows how changes in the water temperature and mixing depth affect mixolimnetic and monimolimnetic food-web components and the depth of the oxic-anoxic interface in a meromictic lake. When weather forcing stimulates an increase in the biomass of food-web components in the mixolimnion, it produces cascading effects that lead to three results: 1) a higher content of detritus in the water column; 2) a higher content of hydrogen sulfide in the monimolimnion; 3) raising of the oxic-anoxic interface closer to the water-air surface. This cascading effect is complicated by the negative correlation between two light dependent primary producers located at different depths—phytoplankton in the mixolimnion and purple sulfur bacteria at the oxic-anoxic interface. Thus, weather conditions that stimulate higher phytoplankton biomass are associated with a higher detritus content and lower biomass of purple sulfur bacteria, a higher content of hydrogen sulfide and a shallower oxic-anoxic interface. The same weather conditions (higher wind, lower cloud cover, and lower air temperature) promote a scenario of less stable thermal stratification. Thus, our calculations suggest that weather parameters during the summer season strongly control the mixing depth, water temperature and the mixolimnetic food web. An effect of biogeochemical and physical interactions on the depth of the oxicanoxic interface is also detectable. However, intra- and interannual climate and weather effects will be more important for the control of meromixis stability. © 2018, Chinese Society for Oceanology and Limnology, Science Press and Springer-Verlag GmbH Germany, part of Springer Nature.

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Держатели документа:
Institute of Biophysics SB RAS, Krasnoyarsk Scientific Center, Akademgorodok, Krasnoyarsk, 660036, Russian Federation
Siberian Federal University, Svobodnii av. 79, Krasnoyarsk, 660079, Russian Federation

Доп.точки доступа:
Prokopkin, I. G.; Zadereev, E. S.

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18.

Experimental approach to study the effect of mutations on the protein folding pathway / E. V. Nemtseva [et al.] // PLoS One. - 2019. - Vol. 14, Is. 1. - Ст. e0210361, DOI 10.1371/journal.pone.0210361. - Cited References:38. - The study of time-resolved protein fluorescence was supported by the Ministry of Science and Education of the Russian Federation (Projects 6.7734.2017). The investigation of protein fluorescence and genetic engineering studies of bovine carbonic anhydrase II were supported by grant N14-24-00157 from the Russian Science Foundation. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.; The study of time-resolved protein fluorescence was supported by the Ministry of Science and Education of the Russian Federation (Project 6.7734.2017). The investigation of protein fluorescence and genetic engineering studies of bovine carbonic anhydrase II were supported by grant N14-24-00157 from the Russian Science Foundation. . - ISSN 1932-6203

РУБ Multidisciplinary Sciences
Рубрики:
FLUORESCENCE LIFETIMES ORIGIN
   TRANSITION-STATE
   EXCHANGE
   TRYPTOPHAN
Аннотация: Is it possible to compare the physicochemical properties of a wild-type protein and its mutant form under the same conditions? Provided the mutation has destabilized the protein, it may be more correct to compare the mutant protein under native conditions to the wild-type protein destabilized with a small amount of the denaturant. In general, is it appropriate to compare the properties of proteins destabilized by different treatments: mutations, pH, temperature, and denaturants like urea? These issues have compelled us to search for methods and ways of presentation of experimental results that would allow a comparison of mutant forms of proteins under different conditions and lead to conclusions on the effect of mutations on the protein folding/unfolding pathway. We have studied equilibrium unfolding of wild-type bovine carbonic anhydrase II (BCA II) and its six mutant forms using different urea concentrations. BCA II has been already studied in detail and is a good model object for validating new techniques. In this case, time-resolved fluorescence spectroscopy was chosen as the basic research method. The main features of this experimental method allowed us to compare different stages of unfolding of studied proteins and prove experimentally that a single substitution of the amino acid in three mutant forms of BCA II affected the native state of the protein but did not change its unfolding pathway. On the contrary, the inserted disulfide bridge in three other mutant forms of BCA II affected the protein unfolding pathway. An important result of this research is that we have validated the new approach allowing investigation of the effect of mutations on the folding of globular proteins, because in this way it is possible to compare proteins in the same structural states rather than under identical conditions.

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Держатели документа:
Siberian Fed Univ, Krasnoyarsk, Russia.
Russian Acad Sci, Siberian Branch, Inst Biophys, Krasnoyarsk, Russia.
Russian Acad Sci, Inst Prot Res, Pushchino, Moscow Region, Russia.

Доп.точки доступа:
Nemtseva, Elena V.; Gerasimova, Marina A.; Melnik, Tatiana N.; Melnik, Bogdan S.; Gerasimova, Marina; Nemtseva, Elena; Ministry of Science and Education of the Russian Federation [6.7734.2017]; Russian Science Foundation [N14-24-00157]

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19.

The benefit-risk analysis of omega-3 polyunsaturated fatty acids and heavy metals in seven smoked fish species from Siberia / M. I. Gladyshev, O. V. Anishchenko, O. N. Makhutova [et al.] // J. Food Compos. Anal. - 2020. - Vol. 90. - Ст. 103489, DOI 10.1016/j.jfca.2020.103489 . - ISSN 0889-1575
Кл.слова (ненормированные):
Coregonus -- Docosahexaenoic acid -- Eicosapentaenoic acid -- GenBank -- Hazard quotients -- Lead
Аннотация: In cold smoked species of genus Coregonus, identified by molecular genetic analysis, contents of fatty acids and heavy metals and arsenic were measured. The highest content of sum of long-chain polyunsaturated fatty acids of omega-3 family (LC-PUFA), namely eicosapentaenoic (EPA) and docosahexaenoic (DHA) fatty acids, 6.53 ± 0.78 mg g?1 wet weight, was characteristic of tugun Coregonus tugun. This is the first quantitative estimation (mg LC-PUFA per g of product) of the nutritive value of smoked fish. Thus, to obtain a daily personal doze of EPA + DHA of 1 g, recommended for prevention of cardiovascular diseases, one needs to consume 153 g of the smoked tugun. Metals contents did not exceed standards for fish meat except Pb in least cisco Coregonus sardinella. Accordingly, values of hazard quotients, which estimate benefit-risk ratio of fish intake, indicate that most of the smoked fish species are safe product for human nutrition, except least cisco regarding Pb content. © 2020 Elsevier Inc.

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Держатели документа:
Institute of Biophysics of Siberian Branch of Russian Academy of Sciences, Akademgorodok, 50/50, Krasnoyarsk, 660036, Russian Federation
Siberian Federal University, Svobodny av. 79, Krasnoyarsk, 660041, Russian Federation
Federal Regional Center for Standardization, Metrology and Testing in the Krasnoyarsk Region, 1a Vavilov Str., Krasnoyarsk, 660093, Russian Federation

Доп.точки доступа:
Gladyshev, M. I.; Anishchenko, O. V.; Makhutova, O. N.; Kolmakova, O. V.; Trusova, M. Y.; Morgun, V. N.; Gribovskaya, I. V.; Sushchik, N. N.

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20.

The benefit-risk analysis of omega-3 polyunsaturated fatty acids and heavy metals in seven smoked fish species from Siberia / M. I. Gladyshev, O. V. Anishchenko, O. N. Makhutova [et al.] // J. Food Compos. Anal. - 2020. - Vol. 90: 12th International Food Data Conference (IFDC) (OCT 11-13, 2017, Buenos Aires, ARGENTINA). - Ст. 103489, DOI 10.1016/j.jfca.2020.103489. - Cited References:66. - The work was supported by the Russian Science Foundation grant (No. 16-14-10001). . - ISSN 0889-1575. - ISSN 1096-0481

РУБ Chemistry, Applied + Food Science & Technology
Рубрики:
FRESH-WATER
   COMMERCIAL FISH
   MUSCLE-TISSUE
   COREGONUS
   MERCURY
Кл.слова (ненормированные):
Eicosapentaenoic acid -- Docosahexaenoic acid -- Coregonus -- Hazard -- quotients -- Lead -- GenBank
Аннотация: In cold smoked species of genus Coregonus, identified by molecular genetic analysis, contents of fatty acids and heavy metals and arsenic were measured. The highest content of sum of long-chain polyunsaturated fatty acids of omega-3 family (LC-PUFA), namely eicosapentaenoic (EPA) and docosahexaenoic (DHA) fatty acids, 6.53 +/- 0.78 mg g(-1) wet weight, was characteristic of tugun Coregonus tugun. This is the first quantitative estimation (mg LC-PUFA per g of product) of the nutritive value of smoked fish. Thus, to obtain a daily personal doze of EPA + DHA of 1 g, recommended for prevention of cardiovascular diseases, one needs to consume 153 g of the smoked tugun. Metals contents did not exceed standards for fish meat except Pb in least cisco Coregonus sardinella. Accordingly, values of hazard quotients, which estimate benefit-risk ratio of fish intake, indicate that most of the smoked fish species are safe product for human nutrition, except least cisco regarding Pb content.

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Держатели документа:
Russian Acad Sci, Siberian Branch, Inst Biophys, Akademgorodok 50-50, Krasnoyarsk 660036, Russia.
Siberian Fed Univ, Svobodny Av 79, Krasnoyarsk 660041, Russia.
Fed Reg Ctr Standardizat Metrol & Testing Krasnoy, 1a Vavilov Str, Krasnoyarsk 660093, Russia.

Доп.точки доступа:
Gladyshev, Michail I.; Anishchenko, Olesia V.; Makhutova, Olesia N.; Kolmakova, Olesia V.; Trusova, Maria Y.; Morgun, Vasiliy N.; Gribovskaya, Iliada V.; Sushchik, Nadezhda N.; Russian Science FoundationRussian Science Foundation (RSF) [16-14-10001]

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