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Principle of the worst scenario in the modelling past and future of biosphere dynamics / S. I. Bartsev, A. G. Degermendzhi, D. V. Erokhin // Ecological Modelling. - 2008. - Vol. 216, Is. 2. - P160-171, DOI 10.1016/j.ecolmodel.2008.03.002 . - ISSN 0304-3800
Кл.слова (ненормированные):
Irreversible biosphere changes -- Minimal model of biosphere -- The worst scenario principle -- Biospherics -- agricultural land -- anthropogenic effect -- atmosphere-biosphere interaction -- carbon dioxide -- deforestation -- Little Ice Age -- numerical model -- Eurasia -- Europe
Аннотация: The "biosphere-climate" system is subjected to different influences (influx of anthropogenic CO2 and pollutants, deforestation, harmful land management, biological species depopulation, etc.). Therefore, the vital question arises: "Can these influences lead to irreversible negative changes in the climate-biosphere system or a global ecological catastrophe?" The possibility of irreversible changes may be not very high, but one cannot ignore it. So the main aim of our investigation is to evaluate possible consequences of human impact on the biosphere focusing on irreversible changes of it. Traditional mathematical complicated models describe the biosphere in great detail, but the large number of equations and parameters leads to accumulation of uncertainties in the forecast due to inevitable uncertainties of experimental estimations of model parameters. An approach based on the principle of the worst scenario was proposed. Minimization of mathematical model with respect to this principle is conducted to study limiting (but possible) versions of models in which the contribution of the possible compensatory and smoothing mechanisms is minimal. Namely the most unfavorable scenarios (corresponding to the values of parameters at the boundaries of confidence interval) have to be considered in estimating consequences of anthropogenic impact. One of the fastest CO2 releasing mechanisms, based on the positive feedback effect, was considered in the context of the worst scenario principle. The family of simple mathematical models was created for biosphere dynamics representation on different timescales. The main result of the investigation consists in confirmation of the possibility of negative and irreversible changes in the "biosphere-climate" system, caused by amplification of the positive feedback: "anthropogenic emission of CO2 - temperature increase - additional CO2 emission due to decomposition of soil organics". Crucial parameters of models, responsible for avalanche-like biosphere changes, are determined. A realizability of hypotheses on anthropogenic causes of Little Ice Age was estimated by corresponding minimal model. Model were used to show the feasibility of the mechanism describing the changing of agricultural field species into indigenous forests in Europe during the Plague, which led to CO2 decrease and temperature fall. В© 2008 Elsevier B.V. All rights reserved.

Scopus
Держатели документа:
Institute of Biophysics SB RAS, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Bartsev, S.I.; Degermendzhi, A.G.; Erokhin, D.V.

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Developing the control criterion for a continuous culture of microorganisms / V. V. Adamovich, D. Yu. Rogozin, A. G. Degermendzhi // Mikrobiologiya. - 2005. - Vol. 74, Is. 1. - С. 5-16 . - ISSN 0026-3656
Кл.слова (ненормированные):
Chemostat -- Control criterion -- Control factor -- Microorganism population -- Sensitivity coefficients -- algorithm -- bacterium -- biological model -- biomass -- culture medium -- ecosystem -- growth, development and aging -- methodology -- microbiological examination -- review -- Algorithms -- Bacteria -- Bacteriological Techniques -- Biomass -- Culture Media -- Ecosystem -- Models, Biological
Аннотация: A short survey and critical analysis of previously proposed criteria for growth control of populations of microorganisms in the chemostat are presented. Based on the analysis of a mathematical model of the steady-state of a microbial population in the chemostat, an adequate control criterion is suggested, along with a method to identify the corresponding regulating factors. The new control criterion is expressed as a product of the factor transformation coefficient and the biomass sensitivity coefficient (SC) with respect to the change of the factor at the chemostat inlet (referred to in the sequel as the biomass SC). The control criterion determines the strength of the control exerted by this or that factor. The method of determination of the regulating factors consists in experimental determination of the real SCs for factors and the biomass and in calculating on this basis the corresponding ideal SCs for constant factor transformation coefficients. The ideal SCs are shown to add up to an integer value, a constraint that we call "quantization" relationships. Such relationships are used to test the completeness of the drawn list of control factors. The proposed method was applied to our own and literature data.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Adamovich, V.V.; Rogozin, D.Yu.; Degermendzhi, A.G.

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Predictive radioecological mathematical model of the Yenisei river / A. G. Degermendzhi, L. G. Kosolapova, V. M. Belolipetskij // Radiatsionnaya Biologiya. Radioekologiya. - 2002. - Vol. 42, Is. 4. - С. 433-439 . - ISSN 0869-8031
Кл.слова (ненормированные):
Cesium -- Contamination -- Mathematical models -- Phosphorus -- Radioisotopes -- River pollution -- Cesium 137 -- Phosphorus 32 -- Radioecology -- The Yenisei river -- Ecosystems -- Bacteria (microorganisms) -- fresh water -- article -- ecosystem -- pollutant -- Russian Federation -- theoretical model -- Ecosystem -- Fresh Water -- Models, Theoretical -- Radioactive Pollutants -- Russia
Аннотация: A one-dimensional mathematical model of the Yenisei river ecosystem including hydrological, ecosystem and radioecologicl blocks has been developed. The model was used to evaluate contribution of different processes (transfer by water masses, dilution, radioactive decay, bioaccumulation) into self-purification of the river water from a radiation pollution. The pollution density of ecosystem components (bacteria, phyto-, zooplankton, phyto-, zoobenthos, detritus) with 137Cs and 32P is calculated.

Scopus
Держатели документа:
Inst. of Biophysics, Siberian Branch, RAS, Akademgorodok, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Degermendzhi, A.G.; Kosolapova, L.G.; Belolipetskij, V.M.

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Challenges and opportunities for integrating lake ecosystem modelling approaches / W. M. Mooij [et al.] // Aquatic Ecology. - 2010. - Vol. 44, Is. 3. - P633-667, DOI 10.1007/s10452-010-9339-3 . - ISSN 1386-2588
Кл.слова (ненормированные):
Adaptive processes -- Analysis -- Aquatic -- Bifurcation -- Biodiversity -- Climate warming -- Community -- Eutrophication -- Fisheries -- Food web dynamics -- Freshwater -- Global change -- Hydrology -- Lake -- Management -- Marine -- Mitigation -- Model integration -- Model limitations -- Non-linear dynamics -- Nutrients -- Plankton -- Population -- Prediction -- Spatial -- Understanding -- adaptive management -- algorithm -- aquatic community -- biodiversity -- ecosystem modeling -- eutrophication -- fishery production -- food web -- fuzzy mathematics -- global warming -- hydrology -- lake ecosystem -- mitigation -- model test -- numerical model -- nutrient availability -- plankton -- prediction -- saline lake -- spatial analysis
Аннотация: A large number and wide variety of lake ecosystem models have been developed and published during the past four decades. We identify two challenges for making further progress in this field. One such challenge is to avoid developing more models largely following the concept of others ('reinventing the wheel'). The other challenge is to avoid focusing on only one type of model, while ignoring new and diverse approaches that have become available ('having tunnel vision'). In this paper, we aim at improving the awareness of existing models and knowledge of concurrent approaches in lake ecosystem modelling, without covering all possible model tools and avenues. First, we present a broad variety of modelling approaches. To illustrate these approaches, we give brief descriptions of rather arbitrarily selected sets of specific models. We deal with static models (steady state and regression models), complex dynamic models (CAEDYM, CE-QUAL-W2, Delft 3D-ECO, LakeMab, LakeWeb, MyLake, PCLake, PROTECH, SALMO), structurally dynamic models and minimal dynamic models. We also discuss a group of approaches that could all be classified as individual based: super-individual models (Piscator, Charisma), physiologically structured models, stage-structured models and trait-based models. We briefly mention genetic algorithms, neural networks, Kalman filters and fuzzy logic. Thereafter, we zoom in, as an in-depth example, on the multi-decadal development and application of the lake ecosystem model PCLake and related models (PCLake Metamodel, Lake Shira Model, IPH-TRIM3D-PCLake). In the discussion, we argue that while the historical development of each approach and model is understandable given its 'leading principle', there are many opportunities for combining approaches. We take the point of view that a single 'right' approach does not exist and should not be strived for. Instead, multiple modelling approaches, applied concurrently to a given problem, can help develop an integrative view on the functioning of lake ecosystems. We end with a set of specific recommendations that may be of help in the further development of lake ecosystem models. В© 2010 The Author(s).

Scopus
Держатели документа:
Netherlands Institute of Ecology (NIOO-KNAW), Department of Aquatic Ecology, Rijksstraatweg 6, 3631 AC Nieuwersluis, Netherlands
Aarhus University, National Environmental Research Institute, Department of Freshwater Ecology, 8600 Silkeborg, Denmark
Greenland Climate Research Centre (GCRC), Greenland Institute of Natural Resources, Kivioq 2, P.O. Box 570, 3900 Nuuk, Greenland
University of Toronto, Department of Physical and Environmental Sciences, Toronto, ON M1C 1A4, Canada
Institute of Computational Modelling (SB-RAS), Siberian Federal University, 660036 Krasnoyarsk, Russian Federation
Tanzania Fisheries Research Institute (TAFIRI), Mwanza Centre, P.O. Box 475, Mwanza, Tanzania
Institute of Biophysics (SB-RAS), Akademgorodok, 660036 Krasnoyarsk, Russian Federation
University of Miami, Florida Integrated Science Centre, USGS, Coral Gables, FL 33124, United States
Wageningen University, Department of Aquatic Ecology and Water Quality, P.O. Box 47, 6700 AA Wageningen, Netherlands
Centre for Ecology and Hydrology, Lancaster Environment Centre, Lake Ecosystem Group, Algal Modelling Unit, Bailrigg, Lancaster LA1 4AP England, United Kingdom
Federal University of Alagoas, Centre for Technology, Campus A.C. Simoes, 57072-970 Maceio-AL, Brazil
Institute of Biochemistry and Biology, Department of Ecology and Ecosystem Modelling, University of Potsdam, Am Neuen Palais 10, 14469 Potsdam, Germany
Swedish University of Agricultural Sciences, Department of Aquatic Sciences and Assessment, P.O. Box 7050, 75007 Uppsala, Sweden
University of Waikato, Centre for Biodiversity and Ecology Research, Private Bag 3105, Hamilton, New Zealand
University of Western Australia, School of Earth and Environment, Crawley, WA 6009, Australia
Technische Universitat Dresden, Institute of Hydrobiology, 01062 Dresden, Germany
Technische Universitat Dresden, Neunzehnhain Ecological Station, Neunzehnhainer Str. 14, 09514 Lengefeld, Germany
Deltares, P.O. Box 177, 2600 MH Delft, Netherlands
Technion-Israel Institute of Technology, Faculty of Civil and Environmental Engineering, Technicon City, Haifa 32000, Israel
Helmholtz Centre for Environmental Research, Department of Lake Research, Brueckstrasse 3a, 39114 Magdeburg, Germany
Witteveen and Bos, P.O. Box 233, 7400 AV Deventer, Netherlands
University of Oslo, Department of Biology, P.O. Box 1066, Blindern, 0316 Oslo, Norway
UNESCO-IHE Institute of Water Education, 2601 DA Delft, Netherlands
Portland State University, Department of Civil and Environmental Engineering, Portland, OR 97207, United States
Netherlands Environmental Assessment Agency (PBL), P.O. Box 303, 3720 AH Bilthoven, Netherlands : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Mooij, W.M.; Trolle, D.; Jeppesen, E.; Arhonditsis, G.; Belolipetsky, P.V.; Chitamwebwa, D.B.R.; Degermendzhy, A.G.; DeAngelis, D.L.; De Senerpont Domis, L.N.; Downing, A.S.; Elliott, J.A.; Fragoso Jr., C.R.; Gaedke, U.; Genova, S.N.; Gulati, R.D.; Hakanson, L.; Hamilton, D.P.; Hipsey, M.R.; 't Hoen, J.; Hulsmann, S.; Los, F.H.; Makler-Pick, V.; Petzoldt, T.; Prokopkin, I.G.; Rinke, K.; Schep, S.A.; Tominaga, K.; van Dam, A.A.; van Nes, E.H.; Wells, S.A.; Janse, J.H.

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The "quantization" of sensitivity coefficients is preserved in microbial populations heterogeneous with respect to growth rate and age / V. M. Nekrasov, A. V. Chernychev, A. G. Degermendzhy // Doklady Biological Sciences. - 2006. - Vol. 406, Is. 1-6. - P91-93, DOI 10.1134/S0012496606010261 . - ISSN 0012-4966
Кл.слова (ненормированные):
algorithm -- article -- bacterium -- biodiversity -- growth, development and aging -- population dynamics -- theoretical model -- time -- Algorithms -- Bacteria -- Biodiversity -- Models, Theoretical -- Population Dynamics -- Time Factors

Scopus
Держатели документа:
Institute of Chemical Kinetics and Combustion, Siberian Division, Russian Academy of Sciences, Institutskaya ul. 3, Novosibirsk, 630090, Russian Federation
Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Nekrasov, V.M.; Chernychev, A.V.; Degermendzhy, A.G.

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Self-restoration as fundamental property of CES providing their sustainability / I. I. Gitelson, A. G. Degermendzhy, E. K. Rodicheva // Advances in Space Research. - 2003. - Vol. 31, Is. 7. - P1641-1648, DOI 10.1016/S0273-1177(03)00111-X . - ISSN 0273-1177
Кл.слова (ненормированные):
Biocatalysts -- Ecosystems -- Genes -- Life support systems (spacecraft) -- Radiation damage -- Cell populations -- Space flight -- space shuttle -- article -- biological model -- biomass -- cell division -- Chlorella -- cytology -- growth, development and aging -- microclimate -- radiation exposure -- radiation response -- ultraviolet radiation -- Biomass -- Cell Division -- Chlorella -- Dose-Response Relationship, Radiation -- Ecological Systems, Closed -- Life Support Systems -- Models, Biological -- Ultraviolet Rays
Аннотация: Sustainability is one of the most important criteria and evaluation of human life support systems intended for use during long space flights. The common feature of biological and physicochemical life support systems is that basically they are both catalytic. But there are two fundamental properties distinguishing biological systems: 1) they are auto-catalytic: their catalysts - enzymes of protein nature - are continuously reproduced when the system functions; 2) the program of every process performed by enzymes and the program of their reproduction are inherent in the biological system itself - in the totality of genomes of the species involved in the functioning of the ecosystem. Actually, one cell with the genome capable of the phenotypic realization is enough for the self-restoration of the function performed by the cells of this species in the ecosystem. The continuous microalgal culture of Chlorella vulgaris was taken to investigate quantitatively the process of self-restoration in unicellular algae population. Based on the data obtained, we proposed a mathematical model of the restoration process in a cell population that has suffered an acute radiation damage. В© 2003 COSPAR. Published by Elsevier Science Ltd. All rights reserved.

Scopus
Держатели документа:
Institute of Biophysics, SB RAS, Krasnoyarsk 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Gitelson, I.I.; Degermendzhy, A.G.; Rodicheva, E.K.

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Understanding the mechanisms of blooming of phytoplankton in Lake Shira, a saline lake in Siberia (the Republic of Khakasia) / A. G. Degermendzhy, R. D. Gulati // Aquatic Ecology. - 2002. - Vol. 36, Is. 2. - P331-340 . - ISSN 1386-2588
Кл.слова (ненормированные):
Carbon budget -- Cyanobacteria -- Heterotrophic bacteria -- Hydrogen sulphide -- Mathematical models of stratification -- Meromictic lakes -- Microbial loop -- Stratification -- Trophic scheme -- algal bloom -- ecosystem modeling -- limiting factor -- nutrient availability -- phytoplankton -- saline lake -- trophic interaction -- Russian Federation -- algae -- Bacteria (microorganisms) -- Cyanobacteria -- Lyngbya -- Lyngbya contorta
Аннотация: The paper summarises the results of a three-year research study (European Union Grant: INTAS 97-0519) aimed at investigating the planktonic populations and trophic organization of the Lake Shira ecosystem - a saline lake in Khakasia, Siberia. The lake exhibits a stable summer-autumn stratification of the chemical-biological components. The mechanisms responsible for the 'blooming' of phytoplankton in the deeper layers were investigated in greater detail, using data from both field and laboratory experiments. The spectra of nutrition were examined to estimate the relationships between the specific growth rates of the hydrobionts and the influence of the limiting factors: light, nutrients. The observed heterotrophic capability of a metalimnetic phytoplankton population might help explain the development in the deeper waters of Lyngbya contorta. The scheme of trophic interactions was put up, based on the assessment of the carbon pools and carbon flows in the pelagic zone of the lake. A mathematical model of the vertical structure of the lake's plankton populations was constructed, using the ecosystem description and data of vertical turbulent diffusion. The role of light and nutrient limitations and grazing mortality in forming the vertical inhomogeneities, particularly in lowering the depth of the maximal cyanobacterial biomass, has been demonstrated. The theoretical curves for the stratification of chemical and biological parameters have been brought in conformity with the field observations, e.g. for the different patterns of the peaks, and for the biomass maxima of cyanobacteria, purple and green sulphur bacteria, oxygen, and hydrogen sulphide. The calculations revealed that for an adequate assessment of the parameters for the hydrogen sulphide zone it is necessary to introduce flows of allochthonous organic matter. Based on the form of the sulphur distribution curve, the allochthonous input of organic matter and the inflow of hydrogen sulphide from the bottom have been theoretically discriminated for the first time. It has also been ascertained that irrespective of the depth the allochthonous substances limiting bacterial growth, the bacteria are uniformly distributed over depth and can serve as an indicator of the presence of limitation (the effect of autostabilisation in space). Of indisputable interest to limnology are the specific methods developed for understanding the functioning of Lake Shira ecosystem. These include the autostabilisation of the limiting factors, the on-the-spot fluorescent method of determining the three classes of microalgae, the algal mixotrophy and the planktonic population interactions and feedbacks, and development of a more sensitive, bioluminescent method for mapping the nonhomogeneities. Owing to a balanced combination of classical approaches (field observations, in situ data on production-decomposition) and the more recent ones (satellite monitoring, biophysical methods of estimating interactions of populations, mathematical models based on the field and experimental data), many of the structural-function relationships in the ecosystem can now be explained, and the models can provide 'mutual control and mutual agreement' between the data collected using different approaches.

Scopus
Держатели документа:
Institute of Biophysics SB RAS, 660036 Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Degermendzhy, A.G.; Gulati, R.D.

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Study of the biological properties of polyoxyalkanoates in the in vivo chronic experiment / E. I. Shishatskaya, T. G. Volova, T. G. Popova // Meditsinskaya Tekhnika. - 2002. - Is. 4. - С. 29-33 . - ISSN 0025-8075
Кл.слова (ненормированные):
biomaterial -- polymer -- animal -- article -- bioremediation -- comparative study -- female -- metabolism -- rat -- suture -- Wistar rat -- Animals -- Biocompatible Materials -- Biodegradation, Environmental -- Female -- Polymers -- Rats -- Rats, Wistar -- Sutures -- Biocompatibility -- Immunology -- Implants (surgical) -- Materials testing -- Organic polymers -- Polyoxyalkanoates -- Rat models -- Suture threads -- Biomaterials
Аннотация: Chronic experiments on mature Wistar rats studied the biological properties of suture threads from two types of polyoxyalkanoates (POA), such as polyoxybutyrate (POB) and the copolymer of POB and polyoxyvalerate (POV) (POB/POV) as compared to the conventional surgical material (silk and catgut). The physiological and biochemical parameters that reflect the status of the animals, including their behavior, height and development, the weight of the body and viscera, the morphology of peripheral blood, the biochemical parameters of blood, the activity of some enzymes, as well as histological findings of the viscera, and lymphoid tissue responses were assessed. POA was found to produce no negative effect on the physiological, biochemical, and functional characteristics of the animals irrespective of the duration of contact with the internal medium of the body and of the chemical composition of a material.

Scopus
Держатели документа:
Inst. Biofiziki SO RAN, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Shishatskaya, E.I.; Volova, T.G.; Popova, T.G.

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Transfer of essential polyunsaturated fatty acids from an aquatic to terrestrial ecosystem through the fish-bird trophic pair / M. I. Gladyshev [et al.] // Doklady Biological Sciences. - 2010. - Vol. 431, Is. 1. - P121-123, DOI 10.1134/S0012496610020146 . - ISSN 0012-4966
Кл.слова (ненормированные):
fatty acid -- fresh water -- triacylglycerol -- unsaturated fatty acid -- animal -- article -- biological model -- biomass -- bird -- chemistry -- ecosystem -- fish -- food chain -- metabolism -- muscle -- pathology -- physiology -- species difference -- Animals -- Biomass -- Birds -- Ecosystem -- Fatty Acids -- Fatty Acids, Unsaturated -- Fishes -- Food Chain -- Fresh Water -- Models, Biological -- Muscles -- Species Specificity -- Triglycerides -- Aves

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Krasnoyarsk 660036, Russian Federation
Papanin Institute of Inland Water Biology, Russian Academy of Sciences, Borok, Yaroslavl' oblast, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Gladyshev, M.I.; Krylov, A.V.; Sushchik, N.N.; Malin, M.I.; Makhutova, O.N.; Chalova, I.V.; Kalacheva, G.S.

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10.

Non-predatory mortality indices of cladoceran zooplankton in the pelagial and littoral of a shallow meso-eutrophic lake / O. P. Dubovskaya [et al.] // Doklady Biological Sciences. - 2007. - Vol. 416, Is. 1-6. - P391-393, DOI 10.1134/S0012496607050201 . - ISSN 0012-4966
Кл.слова (ненормированные):
animal -- article -- biological model -- ecology -- ecosystem -- environment -- growth, development and aging -- metabolism -- physiology -- river -- Russian Federation -- species difference -- zooplankton -- Animals -- Ecology -- Ecosystem -- Environment -- Models, Biological -- Rivers -- Russia -- Species Specificity -- Zooplankton

Scopus
Держатели документа:
Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Krasnoyarsk 660036, Russian Federation
Institute of Zoology, Belarussian Academy of Sciences, ul. F. Skoriny 27, Minsk 220072, Belarus
Siberian Federal University, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Dubovskaya, O.P.; Semenchenko, V.P.; Gladyshev, M.I.; Buseva, J.F.; Razlutskij, V.I.

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11.

Dependence of the domination of Anabaena flos-aquae (Lyngb.) Breb. in the phytoplankton community on the initial abundance of akinetes / E. S. Kravchuk, M. I. Gladyshev, E. A. Ivanova // Doklady Biological Sciences. - 2007. - Vol. 416, Is. 1-6. - P377-378, DOI 10.1134/S0012496607050158 . - ISSN 0012-4966
Кл.слова (ненормированные):
Anabaena flos-aquae -- Anabaena -- animal -- article -- biological model -- biomass -- Cyanobacterium -- metabolism -- microbiology -- physiology -- phytoplankton -- Russian Federation -- season -- sediment -- Anabaena -- Animals -- Biomass -- Cyanobacteria -- Geologic Sediments -- Models, Biological -- Phytoplankton -- Russia -- Seasons -- Water Microbiology

Scopus
Держатели документа:
Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Krasnoyarsk 660036, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation
Krasnoyarsk State Agricultural University, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Kravchuk, E.S.; Gladyshev, M.I.; Ivanova, E.A.

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12.

Phenomenological mathematical model of biomanipulation influence (removal of planktivorous fish) on biomass of cyanobacteria in a small pond / I. G. Prokopkin, V. G. Gubanov, M. I. Gladyshev // Doklady Akademii Nauk. - 2003. - Vol. 392, Is. 6. - С. 847-849 . - ISSN 0869-5652
Кл.слова (ненормированные):
Biomass -- Ecosystems -- Growth kinetics -- Mathematical models -- Carassius auratus -- Cyanobacteria -- Plankton -- Removal of fish -- Algae
Аннотация: Mathematical model is constructed for studying the effect of photosynthesis stimulation in cyanobacteria after their passing through crucian intestines on cyanobacteria biomass changes after bio-manipulations. At good agreement of model and natural data an explanation is found for observed differences in the influence of planktivorous fish on the two species of cyanobacteria. The calculations showed that one of the reasons for appearance of the peak of water blooming with a species Microcystic may be direct metabolic influence of planktivorous fish. Elimination of crucian from the pond will not affect the level of water blooming with Anabaena species.

Scopus
Держатели документа:
Inst. Biofiziki SO RAN, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Prokopkin, I.G.; Gubanov, V.G.; Gladyshev, M.I.

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13.

The use of bioluminescent biotests for study of natural and laboratory aquatic ecosystems / V. A. Kratasyuk [et al.] // Chemosphere. - 2001. - Vol. 42, Is. 8. - P909-915, DOI 10.1016/S0045-6535(00)00177-6 . - ISSN 0045-6535
Кл.слова (ненормированные):
Alcohol dehydrogenase -- Bacterial luciferase -- Bioluminescence -- Blooming -- Pollution -- Trypsin -- Water toxicity -- alcohol dehydrogenase -- benzoquinone -- luciferase -- trypsin -- aquatic ecosystem -- bioluminescence -- water quality -- article -- bacterium culture -- bioluminescence -- blue green alga -- ecosystem -- pond -- seasonal variation -- water pollution -- water quality -- Benzoquinones -- Biological Assay -- Cyanobacteria -- Ecosystem -- Environmental Monitoring -- Eutrophication -- FMN Reductase -- Indicators and Reagents -- Luminescent Measurements -- NADH, NADPH Oxidoreductases -- Water Pollutants -- Russian Federation -- algae -- Bacteria (microorganisms) -- Chlorophyta -- Cyanobacteria -- uncultured cyanobacterium
Аннотация: A set of bioluminescent tests was developed to monitor water quality in natural and laboratory ecosystems. It consisted of four bioluminescent systems: luminous bacteria, coupled enzyme system NADH:FMN-oxidoreductase-luciferase and triplet enzyme systems with alcohol dehydrogenase and trypsin. The set of biotests was applied for a small forest pond (Siberia, Russia), laboratory microecosystems polluted with benzoquinone and a batch culture of blue-green algae. Thereby effects of natural water compared to those of models of heavy pollution and "bloom" of blue-greens on the bioluminescent tests were revealed. The set of biotests was not affected by a natural seasonal variability of water quality in the unpolluted pond, but responded to the heavy pollution and the "bloom" of blue-greens. The set of biotests could be recommended as the alarm test to control the acute toxicity of natural water bodies. В© 2001 Elsevier Science Ltd.

Scopus
Держатели документа:
Krasnoyarsk State University, pr. Svobodnii 79, Krasnoyarsk, 660041, Russian Federation
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Krasnoyarsk, Russian Federation
Krasnoyarsk State Agricultural University, Mira av., 88, Krasnoyarsk, 660049, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Kratasyuk, V.A.; Esimbekova, E.N.; Gladyshev, M.I.; Khromichek, E.B.; Kuznetsov, A.M.; Ivanova, E.A.

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14.

Role of diapause in coexistence of zooplankton species: Model analysis / E. S. Zadereev, I. G. Prokopkin // Doklady Biological Sciences. - 2007. - Vol. 412, Is. 1. - P73-75, DOI 10.1134/S0012496607010243 . - ISSN 0012-4966
Кл.слова (ненормированные):
animal -- article -- biological model -- Cladocera -- ecosystem -- female -- growth, development and aging -- oocyte -- physiology -- population dynamics -- reproduction -- zooplankton -- Animals -- Cladocera -- Ecosystem -- Female -- Models, Biological -- Ovum -- Population Dynamics -- Reproduction -- Zooplankton

Scopus
Держатели документа:
Institute of Biophysics, Siberian Division, Russian Academy of Sciences, Krasnoyarsk, 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Zadereev, E.S.; Prokopkin, I.G.

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15.

Surface bonding states of nano-crystalline diamond balls / J. L. Peng [et al.] // International Journal of Modern Physics B. - 2001. - Vol. 15, Is. 31. - P4071-4085, DOI 10.1142/S0217979201007865 . - ISSN 0217-9792
Кл.слова (ненормированные):
diamond -- article -- crystal structure -- electron -- energy transfer -- nanoparticle -- particulate matter -- structure analysis -- surface property -- transmission electron microscopy
Аннотация: The rough surface of nano-crystalline diamond spheres induces surface electronic states which appear as a broadened pre-peak over approx. 15 eV at the C K-edge energy threshold for carbon in the parallel electron energy loss spectrum (PEELS). This appears to be at least partially due to 1s-?* transitions, although typically the latter occupy a range of only 4 eV for the sp2 edge of highly-oriented pyrollytic graphite (HOPG). No ?* electrons appear in the conduction band inside the diamond particles, where all electrons are sp3 hybridized. PEELS data were also obtained from a chemical vapour deposited diamond film (CVDF) and gem-quality diamond for comparison with the spectra of nano-diamonds. The density of Sp2 and Sp3 states on the surface of diamond nano-crystals is calculated for simple structural models of the diamond balls, including some conjecture about surface structures. The results are used to interpret the sp2/sp3 ratios measured from the PEELS spectra recorded as scans across the particles. Surface roughness at the atomic scale was also examined using high-resolution transmission electron microscopy (HRTEM) and electron nano-diffraction patterns were used to confirm the crystal structures.

Scopus
Держатели документа:
Department of Applied Physics, RMIT University, Swanston Street, Melbourne, Vic. 3051, Australia
Electron Microscope Unit, University of Sydney, NSW 2006, Australia
Molecular Architecture Group, Kirensky Institute of Physics, Institute of Biophysics, 660036 Krasnoyarsk, Russian Federation
School of Physics, University of Melbourne, Parkville, Vic. 3010, Australia : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Peng, J.L.; Bulcock, S.; Belobrov, P.I.; Bursill, L.A.

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16.

Mathematical model of seasonal agrophytocenosis productivity based on terrestrial and satellite monitoring / T. I. Pisman [et al.] // Doklady Biological Sciences. - 2009. - Vol. 428, Is. 1. - P467-470, DOI 10.1134/S0012496609050226 . - ISSN 0012-4966
Кл.слова (ненормированные):
agriculture -- algorithm -- article -- biological model -- biomass -- computer simulation -- crop -- growth, development and aging -- methodology -- season -- space flight -- wheat -- Agriculture -- Algorithms -- Biomass -- Computer Simulation -- Crops, Agricultural -- Models, Biological -- Seasons -- Spacecraft -- Triticum

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50.50, Krasnoyarsk 660036, Russian Federation
Institute of Natural Sciences and Mathematics, Khakass State University, pr. Lenina 90, Abakan, 655000 Khakassia, Russian Federation
Institute of Space and Information Technologies, Siberian Federal University, ul. Kirenskogo 26, Krasnoyarsk 660074, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Pisman, T.I.; Pugacheva, I.Y.; Jukova, E.Y.; Shevyrnogov, A.P.

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17.

Application of satellite data for investigation of dynamic processes in inland water bodies: Lake Shira (Khakasia, Siberia), a case study / A. P. Shevyrnogov, A. V. Kartushinsky, G. S. Vysotskaya // Aquatic Ecology. - 2002. - Vol. 36, Is. 2. - P153-163, DOI 10.1023/A:1015658927683 . - ISSN 1386-2588
Кл.слова (ненормированные):
Modelling -- Phytopigments -- Satellite data -- Satellite equipment -- Software -- Temperature -- AVHRR -- hydrodynamics -- lake -- limnology -- remote sensing -- saline lake -- satellite data -- water temperature -- Russian Federation
Аннотация: This work describes avenues to use satellite information to analyse dynamic processes in aquatic ecosystems. Information for this analysis, was retrieved from AVHRR satellite sensor data. This information consisteds of time series of images of radiation temperature and turbidity. We expect this information will be of great value in analysing inland water bodies. Methods to process satellite information using original software and data processing techniques are proposed. For the investigation of the process and analyses of satellite information Shira Lake (Khakasia, Siberia) was used as a case study. To study the variability of the surface temperature and turbidity of the Lake in summer, the satellite and ground-truth data of the lake was applied. This study represents the first evaluation of the dynamic processes for Lake Shira based on satellite, ground-truth and modelling data. We developed algorithms and software to process satellite images to enable the reconstruction of time dependence of temperature and spectral reflectance of water bodies in the visible range, and to make computer-animated films visualising the spatial and temporal dynamics of the study parameters. The analyses of morphometric, meteorological and hydrological characteristics of Lake Shira have provided a realistic opportunity for processing the satellite information and to develop numerical models of variability of the hydrological regime of the lake. The results obtained demonstrate the feasibility of systematically retrieving the spatial information from the satellite data on the dynamics of the surface water temperature and of the suspended matter in the lake.

Scopus
Держатели документа:
Institute of Biophysics of SB RAS, Akademgorodok, Krasnoyarsk 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Shevyrnogov, A.P.; Kartushinsky, A.V.; Vysotskaya, G.S.

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18.

A study of spectral-polarization characteristics of plant canopies using land-based remote sensing / A. F. Sid'ko [et al.] // Journal of Quantitative Spectroscopy and Radiative Transfer. - 2013. - Vol. 129. - P109-117, DOI 10.1016/j.jqsrt.2013.06.001 . - ISSN 0022-4073
Кл.слова (ненормированные):
Farm crops -- Forest stands -- Spectral brightness coefficients -- Spectral-polarization characteristics -- Forest stand -- Near-infrared spectral regions -- Plant reflectance -- Polarized components -- Reflectance spectrum -- Reflection properties -- Spectral brightness -- Spectral-polarization characteristics -- Forestry -- Luminance -- Physiological models -- Polarization -- Reflection -- Crops -- brightness temperature -- canopy reflectance -- crop plant -- nadir -- polarization -- remote sensing -- spectral analysis -- Farm Crops -- Forestry -- Forests -- Polarization -- Reflection -- Triticum aestivum -- Zea mays
Аннотация: The study addresses reflection and spectral-polarization characteristics of forest stands and farm crops obtained under field conditions. The study of the reflection properties of farm crops shows that during the summer plant growing season, the major factors influencing the plant canopy reflectance are morpho-physiological parameters, plant architectonics, solar elevation h0, and viewing angle. The crop reflectance minimum was recorded at viewing angles 25-30В° with respect to the nadir. Coniferous and broadleaf forest stands had similar reflectance spectra of polarized light. The polarized component was smaller for all coniferous stands than for broadleaf ones. For broad-leaved farm crops (wheat and corn), the polarized component of the spectral brightness coefficients had a greater influence on the plant reflectance in the red and near-infrared spectral regions, ?>720nm. В© 2013 Elsevier Ltd.

Scopus
Держатели документа:
Institute of Biophysics of the Siberian Branch of RAS, 50-50 Akademgorodok, Krasnoyarsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Sid'ko, A.F.; Botvich, I.; Pisman, T.I.; Shevyrnogov, A.P.

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19.

A study of forest vegetation dynamics in the south of the Krasnoyarskii Krai in spring / M. Chernetskiy [et al.] // Advances in Space Research. - 2011. - Vol. 48, Is. 5. - P819-825, DOI 10.1016/j.asr.2011.04.032 . - ISSN 0273-1177
Кл.слова (ненормированные):
EVI -- Forestry -- MODIS -- NDVI -- Remote sensing -- Vegetation phenology -- Accurate measurement -- Annual time series -- Carbon exchange -- Data series -- Dynamic state -- Enhanced vegetation index -- EVI -- Forest vegetation -- Global scale -- Growth dynamics -- Interannual variability -- Moderate resolution imaging spectroradiometer -- MODIS -- NDVI -- Normalized difference vegetation index -- Principal components analysis -- Remote sensing applications -- Remote sensing data -- Satellite data -- Spatial structure -- Spring season -- Terrestrial ecosystems -- Vegetation dynamics -- Vegetation phenology -- Biology -- Climate models -- Dynamics -- Ecosystems -- Estimation -- Forestry -- Monitoring -- Principal component analysis -- Radiometers -- Remote sensing -- Satellite imagery -- Timber -- Time series -- User interfaces -- Vegetation -- Carbon -- Ecosystems -- Forests -- Image Analysis -- Plants -- Remote Sensing -- Time Series Analysis
Аннотация: Remote sensing applications have greatly enhanced ability to monitor and manage in the areas of forestry. Accurate measurements of regional and global scale vegetation dynamics (phenology) are required to improve models and understanding of inter-annual variability in terrestrial ecosystem carbon exchange and climate-biosphere interactions. Study of vegetation phenology is required for understanding of variability in ecosystem. In this paper, monitoring of vegetation dynamics using time series of satellite data is presented. Vegetation variability (vegetation rate) in different topoclimatic areas is investigated. Original software using IDL interactive language for processing of satellite long-term data series was developed. To investigate growth dynamics vegetation rate inferred from remote sensing was used. All estimations based on annual time series of Moderate Resolution Imaging Spectroradiometer (MODIS) imagery. Vegetation rate for Enhanced Vegetation Index (EVI) and Normalized Difference Vegetation Index (NDVI) was calculated using MODIS data. The time series covers spring seasons of each of 9 years, from 2000 to 2008. Comparison of EVI and NDVI derived growth rates has shown that NDVI derived rates reveal spatial structure better. Using long-term data of vegetation rates variance was estimated that helps to reveal areas with anomalous growth rate. Such estimation shows sensitivity degree of different areas to different topoclimatic conditions. Woods of heights depend on spatial topoclimatic variability unlike woods of lowlands. Principal components analysis shows vegetation with different rate conditions. Also it reveals vegetation of same type in areas with different conditions. It was demonstrated that using of methods for estimating the dynamic state of vegetation based on remote sensing data enables successful monitoring of vegetation phenology. В© 2011 COSPAR. Published by Elsevier Ltd. All rights reserved.

Scopus
Держатели документа:
Institute of Biophysics of SB RAS, Akademgorodok 50/50, Krasnoyarsk 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Chernetskiy, M.; Pasko, I.; Shevyrnogov, A.; Slyusar, N.; Khodyayev, A.

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20.

Assessment of the possibility of establishing material cycling in an experimental model of the bio-technical life support system with plant and human wastes included in mass exchange / A. A. Tikhomirov [et al.] // Acta Astronautica. - 2011. - Vol. 68, Is. 9-10. - P1548-1554, DOI 10.1016/j.actaastro.2010.10.005 . - ISSN 0094-5765
Кл.слова (ненормированные):
Biological-technical life support system -- Photosynthesizing unit -- Utilization of plant and human wastes -- Biological substrates -- Chemical component -- Experimental models -- Human waste -- Life support systems -- Mass exchange -- Mass transfer process -- Material cycling -- Photosynthesizing unit -- Physicochemical methods -- Pilot model -- Plant biomass -- Plant wastes -- Recycled products -- Salicornia europaea -- Simultaneous use -- Soil-like substrate -- Utilization of plant and human wastes -- Sodium chloride -- Substrates -- Waste incineration -- Waste utilization
Аннотация: A pilot model of a bio-technical life support system (BTLSS) including human and plant wastes has been developed at the Institute of Biophysics SB RAS (Krasnoyarsk, Russia). This paper describes the structure of the photosynthesizing unit of the system, which includes wheat, chufa and vegetables. The study substantiates the simultaneous use of neutral and biological substrates for cultivating plants. A novel physicochemical method for the involvement of human wastes in the cycling has been employed, which enables the use of recycled products as nutrients for plants. Inedible plant biomass was subjected to biological combustion in the soil-like substrate (SLS) and was thus involved in the system mass exchange; NaCl contained in native urine was returned to the human through the consumption of Salicornia europaea, an edible salt-concentrating plant. Mass transfer processes in the studied BLSS have been examined for different chemical components. В© 2009 Elsevier Ltd. All rights reserved.

Scopus
Держатели документа:
SB RAS Institute of Biophysics, Akademgorodok 50/50, Krasnoyarsk 660036, Russian Federation
Blaise Pascal University, France
ESA-ESTEC, Netherlands : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Tikhomirov, A.A.; Ushakova, S.A.; Velichko, V.V.; Tikhomirova, N.A.; Kudenko, Y.A.; Gribovskaya, I.V.; Gros, J.-B.; Lasseur, C.

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