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Каталог книг и продолжающихся изданий библиотеки Института биофизики СО РАН
Иностранные журналы библиотеки Института биофизики СО РАН
Отечественные журналы библиотеки Института биофизики СО РАН
Каталог диссертаций ИБФ СО РАН
Труды сотрудников ИБФ СО РАН
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1.


   
    Siberian plants: untapped repertoire of bioactive endosymbionts / S. Baker, S. V. Prudnikova, T. Volova // Front. Biol. - 2018. - P1-11, DOI 10.1007/s11515-018-1483-5 . - ISSN 1674-7984
Кл.слова (ненормированные):
bioactive metabolite -- endophyte -- endosymbiont -- novel compound -- siberian plant
Аннотация: Background: Endosymbionts are microorganisms present in all plant species, and constitute the subject of interest among the scientific community. These symbionts have gained considerable attention in recent years, owing to their emerging biological roles. Global challenges, such as antimicrobial resistance, treatment of infectious diseases such as HIV and tuberculosis, cancer, and many genetic disorders, exist. Endosymbionts can help address these challenges by secreting valueadded bioactive compounds with various activities. Objective: Herein, we describe the importance of plants inhabiting Siberian niches. These plants are considered to be among the least studied organisms in the plant kingdom worldwide. Barcoding these plants can be of interest for exploring bioactive endosymbionts possessing myriad biological properties. Methods: A systematic survey of relevant scientific reports was conducted using the PubMed search engine. The reports were analyzed, and compiled to draft this review. Results: The literature survey on Siberian plants regarding endosymbionts included a few reports, since extremely few exploratory studies have been conducted on the plants in these regions. Studies on the endosymbionts of these plants are highly valuable, as they report potent endosymbionts possessing numerous biological properties. Based on these considerations, this review aims to create awareness among the global scientific community working on related areas. Conclusion: This review could provide the basis for barcoding novel endosymbionts of Siberian plants and their ecological importance, which can be exploited in various sectors. The main purpose of this review is to create awareness of Siberian plants, which are among the least studied organisms in the plant kingdom, with respect to endosymbionts, among the scientific community. © 2018 Higher Education Press and Springer-Verlag GmbH Germany, part of Springer Nature

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Держатели документа:
Laboratory of Biotechnology of New Materials, Siberian Federal University, 79 Svobodny pr., Krasnoyarsk, Russian Federation
Siberian Federal University, School of Fundamental Biology and Biotechnology, 79 Svobodny pr., Krasnoyarsk, Russian Federation
Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS,”, 50/50 Akademgorodok, Krasnoyarsk, Russian Federation
Siberian Federal University, 79 Svobodny pr., Krasnoyarsk, Russian Federation

Доп.точки доступа:
Baker, S.; Prudnikova, S. V.; Volova, T.

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2.


   
    Phylogeny of Salmonoid Fishes (Salmonoidei) Based on mtDNA COI Gene Sequences (Barcoding) / V. S. Artamonova [et al.] // Contemp. Probl. Ecol. - 2018. - Vol. 11, Is. 3. - P271-285, DOI 10.1134/S1995425518030022. - Cited References:102. - We are very grateful to colleagues who helped collect samples: E.G. Berestovskii, I.N. Bolotov, E.A. Borovikova, I.V. Vikhrev, L.A. Glushchenko, V.V. Ignatenko, D.P. Karabanov, A.P. Novoselov, V.M. Spitsyn, V.A. Shirokov, and I.L. Shchurov; employees of Trout Hatchery "Adler", the Federal Breeding and Genetic Center for Fish Culture, and Vygsky and Kemsky fish hatcheries; and residents of Barabash-Levada, Len-lu, and Chupa settlements. We also thank S.S. Alekseev for identifying sharp-snouted and blunt-snouted lenoks. This work was supported by the Russian Science Foundation, project no. 16-14-10001. . - ISSN 1995-4255. - ISSN 1995-4263
РУБ Ecology
Рубрики:
MOLECULAR DATING ANALYSIS
   GROWTH-HORMONE INTRONS
   SALMONIFORMES
Кл.слова (ненормированные):
evolution -- network -- molecular clock -- amino acid sequence -- reproductive -- isolation -- immobilization -- fishes
Аннотация: We have analyzed the partial sequences of the mitochondrial COI gene along with the amino acid sequences of cytochrome oxidase subunit I, encoded by this gene region, in representatives of 11 genera of salmonoid fish. For amino acid sequences, two alternative networks are constructed with outgroups represented by either Esocoidei or Osmeroidei as the supposed ancestral groups. This way, Osmeroidei appear to be closer to the salmonoid fish than Esocoidei, and their presence in the network as an outgroup explains the available data on the morphology and karyology of salmonoids much better. A number of the results of this study are fundamentally new. In particular, the slowing down of the molecular evolution of the grayling (Thymallidae) is shown. We conclude that the charr (Salvelinus) is one of the modern genera of salmonoids closest to their ancestor. The hypothesis of the phylogenetic proximity of the genera Brachymystax, Hucho, and Salmo has been confirmed. We also discuss the possibility that it is namely the changes in the amino acid sequence of cytochrome oxidase subunit I that lead to postzygotic reproductive isolation between taxa.

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Держатели документа:
Russian Acad Sci, Severtsov Inst Ecol & Evolut, Moscow 119071, Russia.
Russian Acad Sci, Siberian Branch, Krasnoyarsk Sci Ctr, Inst Biophys, Krasnoyarsk 660036, Russia.

Доп.точки доступа:
Artamonova, V. S.; Kolmakova, O. V.; Kirillova, E. A.; Makhrov, A. A.; Russian Science Foundation [16-14-10001]

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3.


   
    Green light to an integrative view of Microscolex phosphoreus (Duges, 1837) (Annelida: Clitellata: Acanthodrilidae) / E. Rota [et al.] // Zootaxa. - 2018. - Vol. 4496, Is. 1. - P175-189, DOI 10.11646/zootaxa.4496.1.13. - Cited References:53. - This work was partially supported by Grant 15-04-02695-a from the Russian Foundation for Basic Research and the state budget allocated to the fundamental research at the Russian Academy of Sciences (project No 01201351504). Funding for travel to Western Australia (CE, SM) was provided by the Adlerbert Foundation. . - ISSN 1175-5326. - ISSN 1175-5334
РУБ Zoology
Рубрики:
BIOLUMINESCENT EARTHWORMS
   LUMINOUS EARTHWORM
   OLIGOCHAETA
   HAPLOTYPES
Кл.слова (ненормированные):
peregrine earthworm -- cryptic diversity -- morphology -- DNA-barcoding -- bioluminescence
Аннотация: The small synanthropic and peregrine earthworm Microscolex phosphoreus (Duges, 1837) is reported for the first time from Siberia. Morphological and DNA barcode (COI) analyses of this and widely separate samples worldwide demonstrate that, as currently identified, M. phosphoreus is a heterogeneous taxon, with divergent lineages occurring often in the same locality and hardly providing geographically structured genetic signals. The combined morphological and genetic evidence suggests that at least four of the found clades should be reclassified as separate species, both morphologically and genetically distinct from each other. However, as the specimen number was limited and only the COI gene was studied for the genetic work, we hesitate in formally describing new species. There would also be the problem of assigning the available names to specific lineages. Our findings encourage careful external and anatomical examination and using reliable characters such as the interchaetal distances and spermathecal morphology for correct identification and for deeper evaluation of cryptic diversity in this interesting bioluminescent worm.

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Держатели документа:
Univ Siena, Dept Phys Earth & Environm Sci, Via PA Mattioli 4, IT-53100 Siena, Italy.
Univ Gothenburg, Dept Biol & Environm Sci, Systemat & Biodivers, Box 463, SE-40530 Gothenburg, Sweden.
Krasnoyarsk Sci Ctr SB RAS, Fed Res Ctr, Inst Biophys SB RAS, Lab Photobiol, Krasnoyarsk, Russia.

Доп.точки доступа:
Rota, Emilia; Martinsson, Svante; Erseus, Christer; Petushkov, Valentin N.; Rodionova, Natalja S.; Omodeo, Pietro; Russian Foundation for Basic Research [15-04-02695-a]; Adlerbert Foundation; [01201351504]

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4.


   
    Advances in the use of molecular tools in ecological and biodiversity assessment of aquatic ecosystems / M. J. Feio, A. F. Filipe, A. Garcia-Raventos [et al.] // Limnetica. - 2020. - Vol. 39: 19th Congress of the Iberian-Association-of-Limnology (AIL) (JUN 24-29, 2018, Coimbra, PORTUGAL), Is. 1. - P419-440, DOI 10.23818/limn.39.27. - Cited References:92. - We are grateful to all participants of the special session "The use of molecular tools in ecological and biodiversity assessment of aquatic ecosystems" for the productive discussions during the AIL 2018 meeting (XIX Iberian Association of Limnology meeting in Coimbra (Portugal, June 2018). M.J. Feio is supported by MARE strategic program (UID/MAR/04292/2013); SFP Almeida is supported by GeoBioTec strategic program UID/GEO/04035/2019. R. Cordeiro was supported by a Ph.D. Grant (M3.1.a/F/017/2011) from Fundo Regional da Ciencia e Tecnologia (FRCT); A.F. Filipe and A. Garcia-Raventos were supported by FRESHING Project "Next-generation biomonitoring: freshwater bioassessment and species conservation improved with metagenomics" funded by the Portuguese Foundation for Science and Technology (FCT) and COMPETE (PTDC/AAG-MAA/2261/2014 -POCI-01-0145-FEDER-356 016824); F.M.S. Martins was supported by a FCT PhD grant (SFRH/BD/104703/2014); A.R. Calapez was supported by a grant from the FCT-PhD programme FLUVIO (PD\BD\52510\2014); A.M. Pujante acknowledges the BIOWAT-KIT_E!11892 Eurostars project; Maria Fais and Sofia Duarte were supported, respectively, by a PhD (SFRH/BD/113547/2015) and a post-doc fellowship (SFRH/BPD/109842/2015), from FCT; and C. Murria acknowledges the Fundacio Aigues de Barcelona for funding his research. . - ISSN 0213-8409. - ISSN 1989-1806
РУБ Limnology + Marine & Freshwater Biology
Рубрики:
BARCODE REFERENCE LIBRARY
   METABARCODING APPROACH
   RAPID ASSESSMENT
Кл.слова (ненормированные):
eDNA -- metabarcoding -- conservation -- ecological quality -- species -- detection -- rivers -- lakes -- thermal springs -- estuaries -- lagoons
Аннотация: Conservation and sustainable management of aquatic ecosystems is a priority in environmental programs worldwide. However, these aims are highly dependent on the efficiency, accuracy and cost of existent methods for the detection of keystone species and monitoring of biological communities. Rapid advances in eDNA, barcoding and metabarcoding promoted by high-throughput sequencing technologies are generating millions of sequences in a fast way, with a promising cost reduction, and overcoming some difficulties of the traditional taxonomic approaches. This paper provides an updated broad perspective of the current developments in this dynamic field presented in the special session (SS) "The use of molecular tools in ecological and biodiversity assessment of aquatic ecosystems" of the XIX Congress of the Iberian Association of Limnology (AIL2018), held in Coimbra, Portugal. Developments presented are mainly focused on the Iberian Peninsula (Portugal and Spain, including Atlantic Macaronesian islands) but include studies in France, Germany, Finland, Russia (Siberia) and South America. The networks within which these researchers are involved are yet even broader, profiting from existing molecular facilities, and traditional taxonomic expertise, which can be viewed as a characteristic of this new research area. It was evident in the SS that the use of molecular tools is widespread, being used to study a diversity of aquatic systems, from rivers' headwaters to estuaries and coastal lagoons, and volcanic, mountain and frozen lakes to hot springs. The organisms targeted are likewise varied and include fish, macroinvertebrates, meiofauna, microalgae such as diatoms and dinoflagellates, other protists, fungi, and bacteria (cyanobacteria and other). Some studies address the whole biodiversity (i.e., all species present independently of the taxonomic group) from environmental samples of water, biofilms and preservative solution from field samples (e.g., ethanol from macroinvertebrate samples). Great advances were acknowledged in the special session, namely in the use of metabarcoding for detecting hidden biodiversity, juvenile stages, low-abundance species, non-indigenous species and toxicity potential, and ultimately for ecological monitoring of diatoms and invertebrates. Yet, several drawbacks were highlighted and need further work, which include: taxonomic gaps in the reference databases (including gaps at species level and on intraspecific variability) or absence of public databases (e.g. for meiofauna), still high sequencing costs, the need of a substantial bioinformatics effort, difficulties in establishing the amount of environmental sample necessary for a good DNA extraction and the need for testing different genetic markers to obtain accurate results.

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Держатели документа:
Marine & Environm Sci Ctr MARE, Coimbra, Portugal.
Univ Coimbra, Fac Sci & Technol, Dept Life Sci, Coimbra, Portugal.
Univ Porto, CIBIO InBio, Ctr Invest Biodiversidade & Recursos Genet, Campus Vairdo,Vila Conde, Porto, Portugal.
Univ Lisbon, Inst Super Agron, Ctr Invest Biodiversidade & Recursos Genet, CIBIO InBio, Lisbon, Portugal.
Univ Oviedo, Dept Funct Biol, C Julian Claveria S-N, E-33006 Oviedo, Spain.
Univ Lisbon, Sch Agr, Linking Landscape Environm Agr & Food LEAF, Lisbon, Portugal.
Labs Tecnol Levante SL, Avda Benjamin Franklin 16, Valencia 46980, Spain.
Univ Aveiro, Dept Biol & GeoBioTec GeoBioSci, GeoTechnol & GeoEngn Res Ctr, Campus Santiago, P-3810193 Aveiro, Portugal.
Univ Barcelona, Grup Recerca Freshwater Ecol Hydrol & Management, Avinguda Diagonal 643, E-08028 Barcelona, Spain.
Univ Barcelona, Inst Recerca Biodiversitat IRBio, Dept Biol Evolut Ecol & Ciencies Ambientals, Fac Biol, Avinguda Diagonal 643, E-08028 Barcelona, Spain.
Siberian Fed Univ, Fac Biol & Biotechnol, Dept Aquat & Terr Ecosyst, Svobodnyy 79, Krasnoyarsk 660041, Russia.
Univ Porto, Dept Biol, Fac Ciencias, Porto, Portugal.
Univ Minho, Ctr Mol & Environm Biol CBMA, Dept Biol, Campus Gualtar, P-4710057 Braga, Portugal.
Univ Cantabria, Environm Hydraul Inst, C Isabel Torres 15, Santander 39011, Spain.
Univ Acores, InBIO Lab Associado, Ctr Invest Biodiversidade & Recursos Genet, CIBIO,Fac Ciencias & Tecnol, P-9501801 Ponta Delgada, Portugal.
Univ Savoie Mt Blanc, INRA, CARRTEL, 75 Av Corzent, F-74200 Thonon Les Bains, France.
Univ Oulu, Dept Ecol & Genet, Stream Ecol Res Grp, Oulu, Finland.
CSIC, Natl Museum Nat Sci, Spanish Natl Res Council, Calle Jose Gutierrez Abascal 2, E-28006 Madrid, Spain.
Allgenetics, Edificio CICA,Campus Elvilia S-N, E-15008 La Coruna, Spain.
FAUNATICA, Kutojantie 11, Espoo, Finland.
Res Inst Ecosyst Anal & Assessment, Kackertstr 10, D-52072 Aachen, Germany.
Russian Acad Sci BI SB RAN, Biophys Inst, Siberian Branch, 50 Akad Gorodok,Str 50, Krasnoyarsk 660036, Russia.
Univ Perpignan, EPHE UPVD CNRS, 52 Ave Paul Alduy, F-66860 Perpignan, France.
CRIOBE, Lab Excellence Corail, BP 1013, Moorea, French Polynesi, France.

Доп.точки доступа:
Feio, Maria Joao; Filipe, Ana Filipa; Garcia-Raventos, Aina; Ardura, Alba; Calapez, Ana Raquel; Pujante, Ana Maria; Mortagua, Andreia; Murria, Cesc; Diaz-de-Quijano, Daniel; Martins, Filipa M. S.; Duarte, Sofia; Bariain, Marta Sainz; Cordeiro, Rita; Rivera, Sinziana F.; Vaisanen, Leif O. S.; Fonseca, Amelia; Goncalves, Vitor; Garcia-Vazquez, Eva; Rodriguez, David Vieites; Ivanova, Elena A.; Costa, Filipe O.; Barquin, Jose; Rojo, Veronica; Vierna, Joaquin; Fais, Maria; Suarez, Marcos; Nieminen, Marko; Hammers-Wirtz, Monica; Kolmakova, Olesia, V; Trusova, Maria Y.; Beja, Pedro; Gonzalez, Raquel; Planes, Serge; Almeida, Salome F. P.; MARE strategic program [UID/MAR/04292/2013]; GeoBioTec strategic program [UID/GEO/04035/2019]; Fundo Regional da Ciencia e Tecnologia (FRCT) [M3.1.a/F/017/2011]; FRESHING Project "Next-generation biomonitoring: freshwater bioassessment and species conservation improved with metagenomics" - Portuguese Foundation for Science and Technology (FCT); COMPETE [PTDC/AAG-MAA/2261/2014 -POCI-01-0145-FEDER-356 016824]; FCTPortuguese Foundation for Science and Technology [SFRH/BD/104703/2014, SFRH/BD/113547/2015, SFRH/BPD/109842/2015]; FCT-PhD programme FLUVIO [PD\BD\52510\2014]; Eurostars project [BIOWAT-KIT_E!11892]; Fundacio Aigues de Barcelona

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5.


   
    The Center of Origin and Colonization Routes of Noble Salmons of the GenusSalmo(Salmonidae, Actinopterigii) / V. S. Artamonova, S. A. Afanasyev, N. V. Bardukov [et al.] // Dokl. Biochem. Biophys. - 2020. - Vol. 493, Is. 1. - P171-177, DOI 10.1134/S160767292004002X. - Cited References:14. - The work was supported by the Russian Science Foundation (project no. 16-14-10001). . - ISSN 1607-6729. - ISSN 1608-3091
РУБ Biochemistry & Molecular Biology + Biophysics
Рубрики:
PHYLOGENY
Кл.слова (ненормированные):
molecular evolution -- phylogeography -- barcoding -- salmonids -- brown trout -- phylogeny
Аннотация: Genetic diversity and colonization routes of noble salmons were studied using a partial nucleotide sequence of the mitochondrialCOIgene. The brown troutS. trutta,which is the most ancient species of the genus, was concluded to originate from the modern southeastern Pontic-Caspian area, which is currently inhabited by members of the subspeciesS. trutta oxianus. Migrating westward while the Paratethys was in existence (5-34 million years ago), species of the genus colonized ancient water bodies in the modern Mediterranean basin and formed many isolated populations that survived desiccation of the Mediterranean Sea (5-6 million years ago). The Strait of Gibraltar mediated brown trout migrations to Northern Europe; the subspeciesS. trutta truttabelongs to a relatively young phylogenetic lineage of the species. A separate brown trout lineage, currently classified as the subspeciesS. trutta labrax,formed most likely in the area of the modern Danube basin, which was a relatively separate part of the Paratethys and was sometimes isolated as the Pannonian Lake. A highly divergent phylogenetic lineage of Atlantic salmon (S. salar) haplotypes originates from a haplotype of the brown trout that inhabited the area of the modern Strait of Gibraltar.

WOS
Держатели документа:
Russian Acad Sci, Severtsov Inst Ecol & Evolut, Moscow, Russia.
Russian Acad Sci, Krasnoyarsk Sci Ctr, Fed Res Ctr, Inst Biophys,Siberian Branch, Akademgorodok 50-50, Krasnoyarsk, Russia.
Natl Acad Sci Ukraine, Inst Hydrobiol, Kiev, Ukraine.
Fed Select & Genet Ctr Fish Farming, Ropsha Settlement, Ropsha, Leningrad Oblas, Russia.
Natl Acad Sci Ukraine, Schmalhausen Inst Zool, Kiev, Ukraine.
Kerch State Maritime Technol Univ, Fed State Budgetary Educ Inst Higher Educ, Kerch, Crimea, Russia.
VNIRO AzNIIRKh, Azov Black Sea Branch, Krasnodar Branch, Rostov Na Donu, Russia.
Abovyan Armenian State Pedag Univ, Yerevan, Armenia.
Kuban State Univ, Krasnodar, Russia.

Доп.точки доступа:
Artamonova, V. S.; Afanasyev, S. A.; Bardukov, N. V.; Golod, V. M.; Kokodiy, S. V.; Koulish, A. V.; Pashkov, A. N.; Pipoyan, S. K.; Reshetnikov, S. I.; Makhrov, A. A.; Russian Science FoundationRussian Science Foundation (RSF) [16-14-10001]

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6.


   
    The Center of Origin and Colonization Routes of Noble Salmons of the Genus Salmo (Salmonidae, Actinopterigii) / V. S. Artamonova, S. A. Afanasyev, N. V. Bardukov [et al.] // Doklad. Biochem. Biophys. - 2020. - Vol. 493, Is. 1. - P171-177, DOI 10.1134/S160767292004002X . - ISSN 1607-6729
Кл.слова (ненормированные):
barcoding -- brown trout -- molecular evolution -- phylogeny -- phylogeography -- salmonids
Аннотация: Abstract: Genetic diversity and colonization routes of noble salmons were studied using a partial nucleotide sequence of the mitochondrial COI gene. The brown trout S. trutta, which is the most ancient species of the genus, was concluded to originate from the modern southeastern Pontic-Caspian area, which is currently inhabited by members of the subspecies S. trutta oxianus. Migrating westward while the Paratethys was in existence (5–34 million years ago), species of the genus colonized ancient water bodies in the modern Mediterranean basin and formed many isolated populations that survived desiccation of the Mediterranean Sea (5–6 million years ago). The Strait of Gibraltar mediated brown trout migrations to Northern Europe; the subspecies S. trutta trutta belongs to a relatively young phylogenetic lineage of the species. A separate brown trout lineage, currently classified as the subspecies S. trutta labrax, formed most likely in the area of the modern Danube basin, which was a relatively separate part of the Paratethys and was sometimes isolated as the Pannonian Lake. A highly divergent phylogenetic lineage of Atlantic salmon (S. salar) haplotypes originates from a haplotype of the brown trout that inhabited the area of the modern Strait of Gibraltar. © 2020, Pleiades Publishing, Ltd.

Scopus
Держатели документа:
Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russian Federation
Institute of Biophysics of Federal Research Center “Krasnoyarsk Science Center,” Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/50, Krasnoyarsk, Russian Federation
Institute of Hydrobiology, National Academy of Sciences of Ukraine, Kyiv, Ukraine
Federal Selection and Genetic Center of Fish Farming, Ropsha settlement, Leningrad oblast, Russian Federation
Schmalhausen Institute of Zoology, National Academy of Sciences of Ukraine, Kyiv, Ukraine
Federal State Budgetary Educational Institution of Higher Education Kerch State Maritime Technological University, Kerch, Crimea, Russian Federation
Azov–Black Sea Branch, VNIRO (AzNIIRKh), Krasnodar branch, Rostov-on-Don, Russian Federation
Abovyan Armenian State Pedagogical University, Yerevan, Armenia
Kuban State University, Krasnodar, Russian Federation

Доп.точки доступа:
Artamonova, V. S.; Afanasyev, S. A.; Bardukov, N. V.; Golod, V. M.; Kokodiy, S. V.; Koulish, A. V.; Pashkov, A. N.; Pipoyan, S. K.; Reshetnikov, S. I.; Makhrov, A. A.

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