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Каталог книг и продолжающихся изданий библиотеки Института биофизики СО РАН
Иностранные журналы библиотеки Института биофизики СО РАН
Отечественные журналы библиотеки Института биофизики СО РАН
Каталог диссертаций ИБФ СО РАН
Труды сотрудников ИБФ СО РАН
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1.


   
    Quantitative estimation of dragonfly role in transfer of essential polyunsaturated fatty acids from aquatic to terrestrial ecosystems / M. I. Gladyshev [et al.] // Doklady Biochemistry and Biophysics. - 2011. - Vol. 438, Is. 1. - P141-143, DOI 10.1134/S1607672911030094 . - ISSN 1607-6729
Кл.слова (ненормированные):
unsaturated fatty acid -- animal -- article -- chemistry -- ecosystem -- female -- insect -- male -- Animals -- Ecosystem -- Fatty Acids, Unsaturated -- Female -- Insects -- Male -- Anisoptera (dragonflies)

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk 660036, Russian Federation
Institute of Animal Systematics and Ecology, Siberian Branch, Russian Academy of Sciences, ul. Frunze 11, Novosibirsk 630091, Russian Federation
Siberian Federal University, Krasnoyarsk 660041, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Gladyshev, M.I.; Kharitonov, A.Y.; Popova, O.N.; Sushchik, N.N.; Makhutova, O.N.; Kalacheva, G.S.

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2.


   
    Seasonal dynamics of long-chain polyunsaturated fatty acids in littoral benthos in the upper Yenisei river / N. N. Sushchik [et al.] // Aquatic Ecology. - 2007. - Vol. 41, Is. 2. - P349-365, DOI 10.1007/s10452-006-9065-z . - ISSN 1386-2588
Кл.слова (ненормированные):
Essential compounds -- Periphytonic microalgae -- Riverine food chain -- Zoobenthos -- amphipod -- annelid -- benthos -- biomass -- diatom -- dominance -- fatty acid -- food chain -- larva -- littoral environment -- seasonal variation -- Eurasia -- Krasnoyarsk [Russian Federation] -- Russian Federation -- Yenisei River -- Amphipoda -- Annelida -- Arthropoda -- Bacillariophyta -- Chironomidae -- Gammaridae -- Hexapoda -- Invertebrata -- Oligochaeta (Metazoa) -- Trichoptera
Аннотация: We studied composition and concentrations of fatty acids (FAs) in benthos from pebbly littoral region of the Yenisei River in a sampling site near Krasnoyarsk city (Siberia, Russia) for 1 year from March 2003 to February 2004. Special attention was paid to major long-chain polyunsaturated fatty acids (PUFAs) of the ?3 family: eicosapentaenoic acid (EPA, 20:5?3) and docosahexaenoic acids (DHA, 22:6?3). In phytobenthos, which was dominated by diatoms, the annual maxima of EPA and DHA pool occurred in spring and early summer. In zoobenthos, EPA and DHA pool peaked in autumn, due mainly to an increase of the biomass of dominant taxa (gammarids) and to a moderate increase of the PUFA content per body weight. Seasonal peaks of EPA in overwintering insect larvae (chironomids and caddisflies) generally coincided with those of biomass of these larvae, while there was no such trend for amphipods and oligochaetes. In spring and early summer, the main part of ?3 PUFA, 40-97% of total amount, in the littoral region was contained in biomass of producers, i.e., benthic microalgae, and in autumn it was transferred to primary consumers-benthic invertebrates, which contained ?76-93% of total ?3 PUFAs. В© 2006 Springer Science+Business Media, B.V.

Scopus
Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk 660036, Russian Federation
Krasnoyarsk State Agricultural University, Mira av., 88, Krasnoyarsk 660049, Russian Federation
Krasnoyarsk State University, Svobodny av., 79, Krasnoyarsk 660042, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Sushchik, N.N.; Gladyshev, M.I.; Kravchuk, E.S.; Ivanova, E.A.; Ageev, A.V.; Kalachova, G.S.

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3.


   
    Comparison of fatty acid contents and composition in major lipid classes of larvae and adults of mosquitoes (Diptera: Culicidae) from a steppe region / N. N. Sushchik [et al.] // Insect Science. - 2013. - Vol. 20, Is. 5. - P585-600, DOI 10.1111/j.1744-7917.2012.01582.x . - ISSN 1672-9609
Кл.слова (ненормированные):
Amphibiotic insects -- Essential fatty acids -- Metamorphosis -- Mosquitoes -- Short-chain polyunsaturated fatty acids
Аннотация: Emerging aquatic insects, including mosquitoes, are known to transfer to terrestrial ecosystems specific essential biochemicals, such as polyunsaturated fatty acids (PUFA). We studied fatty acid (FA) composition and contents of dominant mosquito populations (Diptera: Culicidae), that is, Anopheles messeae, Ochlerotatus caspius, Oc. flavescens, Oc. euedes, Oc. subdiversus, Oc. cataphylla, and Aedes cinereus, inhabited a steppe wetland of a temperate climate zone to fill up the gap in their lipid knowledge. The polar lipid and triacylglycerol fractions of larvae and adults were compared. In most studied mosquito species, we first found and identified a number of short-chain PUFA, for example, prominent 14:2n-6 and 14:3n-3, which were not earlier documented in living organisms. These PUFA, although occurred in low levels in adult mosquitoes, can be potentially used as markers of mosquito biomass in terrestrial food webs. We hypothesize that these acids might be synthesized (or retroconverted) by the mosquitoes. Using FA trophic markers accumulated in triacylglycerols, trophic relations of the mosquitoes were accessed. The larval diet comprised green algae, cryptophytes, and dinoflagellates and provided the mosquitoes with essential n-3 PUFA, linolenic, and eicosapentaenoic acids. As a result, both larvae and adults of the studied mosquitoes had comparatively high content of the essential PUFA. Comparison of FA proportions in polar lipids versus storage lipids shown that during mosquito metamorphosis transfer of essential eicosapentaenoic and arachidonic acids from the reserve in storage lipids of larvae to functional polar lipids in adults occurred. В© 2012 Institute of Zoology, Chinese Academy of Sciences.

Scopus
Держатели документа:
Institute of Biophysics of Siberian Branch of Russian Academy of Sciences, Akademgorodok, 50/50, Krasnoyarsk, Russian Federation
Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russian Federation
Institute of Systematics, Ecology of Animals of Siberian Branch of Russian Academy of Sciences, Novosibirsk, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Sushchik, N.N.; Yurchenko, Y.A.; Gladyshev, M.I.; Belevich, O.E.; Kalachova, G.S.; Kolmakova, A.A.

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4.


   
    Model approaches to description of critical phenomena in forest ecosystems / A. S. Isaev, V. G. Soukhovolsky, R. G. Khlebopros // Contemporary Problems of Ecology. - 2011. - Vol. 4, Is. 7. - P699-705, DOI 10.1134/S1995425511070010 . - ISSN 1995-4255
Кл.слова (ненормированные):
critical phenomena -- ecosystem -- modeling -- phase transitions -- population -- population dynamics -- data set -- ecosystem modeling -- forest ecosystem -- forest fire -- insect -- optimization -- population dynamics -- succession -- Hexapoda
Аннотация: Methodological bases of optimization modeling approach are considered in regard to describing critical phenomena in forest ecosystems. Models of insects' outbreaks, forest successions, forest fires as second order phase transitions are proposed. It is shown that there is fair correlation between model calculations and observations data. В© 2011 Pleiades Publishing, Ltd.

Scopus
Держатели документа:
Center on the Problems of Ecology and Productivity of Forests, Russian Academy of Sciences, ul. Profsoyuznaya 84/32, Moscow 117997, Russian Federation
Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Sciences, Akademgorodok 50/28, Krasnoyarsk 660036, Russian Federation
Intern Cntr 4 Rrch o Extr. St. of Organi w in Pres., of Krasnoyarsk Res Ctr of Sib Brnch of the Russ. Ac of Sc, Akademgorodok, Krasnoyarsk 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Isaev, A.S.; Soukhovolsky, V.G.; Khlebopros, R.G.

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5.


   
    An optimization model of competition between species for resource. / V. G. Sukhovol'skii, R. G. Khlebopros, T. R. Iskhakov // Doklady. Biochemistry and biophysics. - 2003. - Vol. 390. - P171-173 . - ISSN 1607-6729
Кл.слова (ненормированные):
animal -- article -- biological model -- comparative study -- competitive behavior -- computer simulation -- ecosystem -- evaluation -- growth, development and aging -- insect -- physiology -- plankton -- population dynamics -- population growth -- quality control -- species difference -- validation study -- Animals -- Competitive Behavior -- Computer Simulation -- Ecosystem -- Insects -- Models, Biological -- Plankton -- Population Dynamics -- Population Growth -- Quality Control -- Species Specificity

Scopus
Держатели документа:
Sukachev Institute of Forest, Siberian Division, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036 Russia. : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Sukhovol'skii, V.G.; Khlebopros, R.G.; Iskhakov, T.R.

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6.


   
    Dynamics of forest insect density: Bifurcation approach / A. D. Bazykin [et al.] // Journal of Theoretical Biology. - 1997. - Vol. 186, Is. 3. - P267-278, DOI 10.1006/jtbi.1996.0363 . - ISSN 0022-5193
Кл.слова (ненормированные):
article -- ecology -- forest -- insect -- nonhuman -- population density -- population dynamics -- population model -- priority journal
Аннотация: Six basic phase portraits differing in character and in the number of their equilibrium behaviour regimes were suggested in the classification of forest insect population dynamics. The portraits graphically illustrate six types of dynamic behavior of numbers of the system 'phytophage-entomophage': two types of stable equilibrium dynamics (stationary and oscillatory) and four types corresponding to outbreaks of mass reproduction - fixed, permanent, reversive and true outbreaks, respectively. In this paper we consider the single parameter model, with its parametric domains realizing a wide spectrum of phase dynamics, both basic and transitional. The changes in the phase portraits are accompanied by the bifurcations in the model. The results of these analyses are in agreement with the 'stability principle of mobile ecological systems' and may supply its parameter substantiation at the model level.

Scopus
Держатели документа:
Inst. of Math. Problem Biology, Russian Academy of Sciences, Puschino Moscow Region, 142292, Russian Federation
Ctr. of Productivity and Forest E., Russian Academy of Sciences, Novocheremushkinskaya, 69, Moscow 117418, Russian Federation
Institute of Biophysics S.B., Russ. Acad. of Sciences, Krasnoyarsk, Akademgorodok 660036, Russian Federation : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Bazykin, A.D.; Berezovskaya, F.S.; Isaev, A.S.; Khlebopros, R.G.

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7.


   
    Expression, purification and characterization of the secreted luciferase of the copepod Metridia longa from Sf9 insect cells [Text] / G. A. Stepanyuk [et al.] // Protein Expr. Purif. - 2008. - Vol. 61, Is. 2. - P142-148, DOI 10.1016/j.pep.2008.05.013. - Cited References: 34. - This work was supported by the National Institutes of Health (Grant 1P50 GM62407), University of Georgia Research Foundation and Georgia Research Alliance, the Russian Foundation for Basic Research and Taiwan National Science Council (Grant 06-0489502) and the program for "Molecular and Cellular Biology" of Russian Academy of Sciences. . - ISSN 1046-5928
РУБ Biochemical Research Methods + Biochemistry & Molecular Biology + Biotechnology & Applied Microbiology
Рубрики:
VARGULA-HILGENDORFII LUCIFERASE
   CRYSTAL-STRUCTURE
   RENILLA-RENIFORMIS
   GAUSSIA LUCIFERASE
   BIOLUMINESCENT REPORTER
   OBELIN BIOLUMINESCENCE
   ANGSTROM RESOLUTION
   MAMMALIAN-CELLS
   GENE-EXPRESSION
   IN-VIVO
Аннотация: Metridia luciferase is a secreted luciferase from a marine copepod and uses coelenterazine as a substrate to produce a blue bioluminescence This luciferase has been successfully applied as a bioluminescent reporter in mammalian cells. The main advantage of secreted luciferase as a reporter is the capability of measuring intracellular events without destroying the cells or tissues and this property is well suited for development of high throughput screening technologies. However because Metridia luciferase is a Cys-rich protein, Escherichia coli expression systems produce an incorrectly folded protein, hindering its biochemical characterization and application for development of in vitro bioluminescent assays. Here we report the successful expression of Metridia luciferase with its signal peptide for secretion, in insect (Sf9) cells using the baculovirus expression system. Functionally active luciferase secreted by insect cells into the culture media has been efficiently purified with a yield of high purity protein of 2-3mg/L This Metridia luciferase expressed in the insect cell system is a monomeric protein showing 3.5-fold greater bioluminescence activity than luciferase expressed and purified from E. coli. The near coincidence of the experimental mass of Metridia luciferase purified from insect cells with that calculated from amino acid sequence. indicates that luciferase does not undergo post-translational modifications such as phosphorylation or glycosylation and also, the cleavage site of the signal peptide for secretion is at VQA-KS, as predicted from sequence analysis. (c) 2008 Elsevier Inc. All rights reserved.

Держатели документа:
[Stepanyuk, Galina A.
Markova, Svetlana V.
Vysotski, Eugene S.] Russian Acad Sci, Photobiol Lab, Inst Biophys, Siberian Branch, Krasnoyarsk 660036, Russia
[Stepanyuk, Galina A.
Xu, Hao
Wu, Chia-Kuei
Lee, John
Vysotski, Eugene S.
Wang, Bi-Cheng] Univ Georgia, Dept Biochem & Mol Biol, Athens, GA 30602 USA
ИБФ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Stepanyuk, G.A.; Xu, H...; Wu, C.K.; Markova, S.V.; Lee, J...; Vysotski, E.S.; Wang, B.C.

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8.


   
    Role of taxis in the dynamics of forest insect population [Текст] / F. S. Berezovskaya [и др.] // Dokl. Akad. Nauk. - 1999. - Vol. 365, Is. 3. - P. 416-419. - Cited References: 9 . - ISSN 0869-5652
РУБ Multidisciplinary Sciences


WOS
Держатели документа:
Russian Acad Sci, Inst Forest Ecol & Growth, Moscow, Russia
Russian Acad Sci, Inst Biophys, Krasnoyarsk, Russia
ИБФ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50
Доп.точки доступа:
Berezovskaya, F.S.; Isaev, A.S.; Karev, G.P.; Khlebopros, R.G.

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9.


   
    Comparison of fatty acid composition in major lipid classes of the dominant benthic invertebrates of the Yenisei river [Text] / N. N. Sushchik [et al.] // Comp. Biochem. Physiol. B-Biochem. Mol. Biol. - 2003. - Vol. 134, Is. 1. - P. 111-122, DOI 10.1016/S1096-4959(02)00191-4. - Cited References: 30 . - ISSN 1096-4959
РУБ Biochemistry & Molecular Biology + Zoology
Рубрики:
LAKE-ERKEN
   BIOMARKERS
   BACTERIA
   MARKERS
   DIET
   FISH
   N-3
Кл.слова (ненормированные):
fatty acids -- triacylglycerols -- polar lipids -- gammarids -- aquatic larvae of insects
Аннотация: The composition and content of fatty acids (FAs) in total lipids, triacylglycerols (TAG) and polar lipids (PL) in dominant groups of benthic invertebrates: gammarids (Gammaridae, Amphipoda), chironomid larvae (Chironomidae, Diptera), caddisfly larvae (Trichoptera) and mayfly larvae (Ephemeroptera) were studied in the Yenisei river. For the first time data on the FA composition of species belonging to Trichoptera (Insecta) are presented. The groups of aquatic insect larvae and gammarids weakly differed in total content of essential polyunsaturated fatty acids (PUFAs). Hence, the strong invasion of gammarids which occurred in the last decades in the Yenisei river should not result in a decrease in potential yield of essential PUFA in the ecosystem and corresponding decrease in food resource quality for fish in respect to PUFA content. Significant differences in biomarker FAs in TAG were found which correlated to specific food sources. Different levels of long-chain PUFA in PL of the invertebrates are discussed in relation to the genetic ability of particular taxa to form these FAs. (C) 2002 Elsevier Science Inc. All rights reserved.

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Держатели документа:
Russian Acad Sci, Inst Biophys, Siberian Branch, Krasnoyarsk 660036, Russia
Krasnoyarsk State Univ, Krasnoyarsk 660041, Russia
ИБФ СО РАН : 660036, Красноярск, Академгородок, д. 50, стр. 50

Доп.точки доступа:
Sushchik, N.N.; Gladyshev, M.I.; Moskvichova, A.V.; Makhutova, O.N.; Kalachova, G.S.

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10.


   
    The smallest natural high-active luciferase: Cloning and characterization of novel 16.5-kDa luciferase from copepod Metridia longa [Text] / S. V. Markova [et al.] // Biochem. Biophys. Res. Commun. - 2015. - Vol. 457, Is. 1. - P77-82, DOI 10.1016/j.bbrc.2014.12.082. - Cited References:20. - The cloning of cDNA encoding MLuc7 luciferase of M. longa was supported by Bayer AG (Germany); all other studies - by the grant 14-14-01119 of the Russian Science Foundation. We declare that authors have no conflict of interest. . - ISSN 0006-291X. - ISSN 1090-2104
РУБ Biochemistry & Molecular Biology + Biophysics
Рубрики:
CDNA CLONING
   SECRETED LUCIFERASE
   ESCHERICHIA-COLI
   EXPRESSION
Кл.слова (ненормированные):
Bioluminescence -- Coelenterazine -- Copepod luciferase -- Mammalian -- expression -- Real-time imaging
Аннотация: Coelenterazine-dependent copepod luciferases containing natural signal peptide for secretion are a very convenient analytical tool as they enable monitoring of intracellular events with high sensitivity, without destroying cells or tissues. This property is well suited for application in biomedical research and development of cell-based assays for high throughput screening. We report the cloning of cDNA gene encoding a novel secreted non-allelic 16.5-kDa isoform (MLuc7) of Metridia longa luciferase, which, in fact, is the smallest natural luciferase of known for today. Despite the small size, isoform contains 10 conservative Cys residues suggesting the presence of up to 5 S-S bonds. This hampers the efficient production of functionally active recombinant luciferase in bacterial expression systems. With the use of the baculovirus expression system, we produced substantial amounts of the proper folded MLuc7 luciferase with a yield of similar to 3 mg/L of a high purity protein. We demonstrate that MLuc7 produced in insect cells is highly active and extremely thermostable, and is well suited as a secreted reporter when expressed in mammalian cells ensuring higher sensitivity of detection as compared to another Metridia luciferase isoform (MLuc164) which is widely employed in real-time imaging. (C) 2014 Elsevier Inc. All rights reserved.

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Держатели документа:
Russian Acad Sci, Inst Biophys, Photobiol Lab, Siberian Branch, Krasnoyarsk, Russia.
Siberian Fed Univ, Chair Biophys, Krasnoyarsk, Russia.
ИБФ СО РАН

Доп.точки доступа:
Markova, Svetlana V.; Larionova, Marina D.; Burakova, Ludmila P.; Vysotski, Eugene S.; Bayer AG (Germany); Russian Science Foundation [14-14-01119]

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11.


   
    Fluxes of biomass and essential polyunsaturated fatty acids from water to land via chironomid emergence from a mountain lake / E. V. Borisova [et al.] // Contemp. Probl. Ecol. - 2016. - Vol. 9, Is. 4. - P446-457, DOI 10.1134/S199542551604003X . - ISSN 1995-4255
Кл.слова (ненормированные):
amphibiotic insect emergence -- biogenic fluxes from water to land -- Chironomidae -- mountain landscape -- polyunsaturated fatty acids -- Chironomidae -- Hexapoda
Аннотация: The taxonomic composition, seasonal dynamics, and emergence intensity of chironomid adults (the Chironomidae family) emerging from Oiskoe mountain oligotrophic lake (Western Sayan, Southern Siberia) have been established. The value of the annual emergence of chironomid adults averages 0.42 g wet weight m-2 in the lake area and approaches the value of potential emergence, which is calculated based on the estimate of zoobenthos secondary production. For the first time the fatty-acid composition and contents of essential omega-3 polyunsaturated fatty acids (PUFAs) are compared between the larvae and adult stages of chironomids. The PUFA content per wet weight unit in adults is more than 7 times higher than that in larvae. The PUFA flux per lake area unit resulting from the chironomid emergence amounted to 1.752 mg m-2 y-1, which is over 10 times lower than the global estimate for the emergence of amphibiotic insects. Calculations show that the PUFA flux brought with the chironomid emergence per land unit of the studied mountain territory is very low when compared to that for other landscapes, with the exception of the shoreline part of the territory with a width of 15 m, in which the PUFA flux is comparable to that in productive landscapes. © 2016, Pleiades Publishing, Ltd.

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Держатели документа:
Siberian Federal University, pr. Svobodny 79, Krasnoyarsk, Russian Federation
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/50, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Borisova, E. V.; Makhutova, O. N.; Gladyshev, M. I.; Sushchik, N. N.

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12.


   
    Export of aquatic productivity, including highly unsaturated fatty acids, to terrestrial ecosystems via Odonata / O. N. Popova [et al.] // Sci. Total Environ. - 2017. - Vol. 581-582. - P40-48, DOI 10.1016/j.scitotenv.2017.01.017 . - ISSN 0048-9697
Кл.слова (ненормированные):
Amphibiotic insect emergence -- Aquatic subsidy -- Docosahexaenoic acid, forest-steppe -- Eicosapentaenoic acid -- Aquatic ecosystems -- Carbon -- Ecology -- Ecosystems -- Forestry -- Organic carbon -- Productivity -- Unsaturated fatty acids -- Amphibiotic insect emergence -- Aquatic subsidy -- Docosahexaenoic acid -- Eicosapentaenoic acid -- Highly unsaturated fatty acids -- Terrestrial ecosystems -- Terrestrial landscape -- Western Siberia , Russia -- Fatty acids -- Animalia -- Aves -- Hexapoda -- Odonata
Аннотация: Based on 31-year field study of the abundance and biomass of 18 species of odonates in the Barabinsk Forest–Steppe (Western Siberia, Russia), we quantified the contribution of odonates to the export of aquatic productivity to surrounding terrestrial landscape. Emergence varied from 0.8 to 4.9 g of wet biomass per m2 of land area per year. Average export of organic carbon was estimated to be 0.30 g·m? 2·year? 1, which is comparable with the average production of herbivorous terrestrial insects in temperate grasslands. Moreover, in contrast to terrestrial insects, emerging odonates contained high quantities of highly unsaturated fatty acids (HUFA), namely eicosapentaenoic acid (20:5n-3, EPA), and docosahexaenoic acid (22:6n-3, DHA), which are known to be essential for many terrestrial animals, especially for birds. The export of EPA + DHA by odonates was found to be 1.92–11.76 mg·m? 2·year? 1, which is equal to an average general estimation of the export of HUFA by emerging aquatic insects. Therefore, odonates appeared to be a quantitatively and qualitatively important conduit of aquatic productivity to forest-steppe ecosystem. © 2017 Elsevier B.V.

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Держатели документа:
Institute of Systematics and Ecology of Animals of Siberian Branch of Russian Academy of Sciences, Frunze str. 11, Novosibirsk, Russian Federation
Institute of Biophysics of Federal Research Center “Krasnoyarsk Science Center” of Siberian Branch of Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, Russian Federation
Siberian Federal University, Svobodny av. 79, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Popova, O. N.; Haritonov, A. Y.; Sushchik, N. N.; Makhutova, O. N.; Kalachova, G. S.; Kolmakova, A. A.; Gladyshev, M. I.

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13.


   
    The novel extremely psychrophilic luciferase from Metridia longa: Properties of a high-purity protein produced in insect cells / M. D. Larionova, S. V. Markova, E. S. Vysotski // Biochem. Biophys. Res. Commun. - 2017. - Vol. 483, Is. 1. - P772-778, DOI 10.1016/j.bbrc.2016.12.067. - Cited References:24. - The cloning of cDNAs encoding MLuc2 isoforms of M. longa was supported by Bayer AG (Germany) and the state budget allocated to the fundamental research at the Russian Academy of Sciences (project No. 01201351504); all other studies were funded by RFBR and Government of Krasnoyarsk Territory according to the research project No. 16-44-242099. . - ISSN 0006-291X. - ISSN 1090-2104
РУБ Biochemistry & Molecular Biology + Biophysics
Рубрики:
CDNA CLONING
   EXPRESSION
   ENZYME
Кл.слова (ненормированные):
Bioluminescence -- Coelenterazine -- Bioluminescent reporter -- Psychrophilic -- enzyme -- Molecular adaptation
Аннотация: The bright bioluminescence of copepod Metridia longa is conditioned by a small secreted coelenterazinedependent luciferase (MLuc). To date, three isoforms of MLuc differing in length, sequences, and some properties were cloned and successfully applied as high sensitive bioluminescent reporters. In this work, we report cloning of a novel group of genes from M. longa encoding extremely psychrophilic isoforms of MLuc (MLuc2-type). The novel isoforms share only similar to 54-64% of protein sequence identity with the previously cloned isoforms and, consequently, are the product of a separate group of paralogous genes. The MLuc2 isoform with consensus sequence was produced as a natively folded protein using baculovirus/ insect cell expression system, purified, and characterized. The MLuc2 displays a very high bioluminescent activity and high thermostability similar to those of the previously characterized M. longa luciferase isoform MLuc7. However, in contrast to MLuc7 revealing the highest activity at 12-17 degrees C and 0.5 M NaCl, the bioluminescence optima of MLuc2 isoforms are at similar to 5 degrees C and 1 M NaCl. The MLuc(2) adaptation to cold is also accompanied by decrease of melting temperature and affinity to substrate suggesting a more conformational flexibility of a protein structure. The luciferase isoforms with different temperature optima may provide adaptability of the M. longa bioluminescence to the changes of water temperature during diurnal vertical migrations. (C) 2016 Elsevier Inc. All rights reserved.

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Fed Res Ctr Krasnoyarsk Sci Ctr SB RAS, Inst Biophys SB RAS, Photobiol Lab, Krasnoyarsk, Russia.
Siberian Fed Univ, Krasnoyarsk, Russia.

Доп.точки доступа:
Larionova, Marina D.; Markova, Svetlana V.; Vysotski, Eugene S.; Bayer AG (Germany); Russian Academy of Sciences [01201351504]; RFBR; Government of Krasnoyarsk Territory [16-44-242099]

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14.


   
    Fatty acid composition and content in chironomid species at various life stages dominating in a saline Siberian lake / O. N. Makhutova [et al.] // Contemp. Probl. Ecol. - 2017. - Vol. 10, Is. 3. - P230-239, DOI 10.1134/S1995425517030064 . - ISSN 1995-4255
Кл.слова (ненормированные):
amphibiotic insect emergence -- Chironomidae -- fatty acids -- life stages -- saline lake -- Chironomidae -- Glyptotendipes barbipes -- Hexapoda
Аннотация: This paper studies the fatty acid (FA) composition and content of essential polyunsaturated fatty acids (PUFAs) in the biomass of larvae and adults of chironomids from the saline Shira Lake. Species of different genera significantly differ in their larvae FA composition and essential PUFA content, and they also occupy different ecological niches: Chironomus species with a low PUFA content (0.2–0.3 mg g–1 of wet weight) inhabit a deepwater zone of the lake, while Glyptotendipes barbipes species that were richer in PUFA (2.3 mg g–1 of wet weight) dwell in the littoral of the lake. The biochemical differences are likely related to different feeding spectra of these taxa and can also be explained by the phylogenetic factor. A comparison does not find differences in the PUFA content in larvae and adults in the samples of the same species G. barbipes; i.e., we do not confirm the data on an increase in the content of these acids during the metamorphosis of chironomids. Thus, the data on the PUFA content in larvae can be used in calculations of PUFA fluxes through chironomid emergence from water bodies; however, the taxonomic affiliation of the emerged chironomids should be taken into consideration due to the high variability in the PUFA content in Chironomidae species. © 2017, Pleiades Publishing, Ltd.

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Держатели документа:
Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Makhutova, O. N.; Borisova, E. V.; Shulepina, S. P.; Kolmakova, A. A.; Sushchik, N. N.

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15.


   
    The disulfide-rich Metridia luciferase refolded from E. coli inclusion bodies reveals the properties of a native folded enzyme produced in insect cells / S. V. Markova [et al.] // J. Photochem. Photobiol. B-Biol. - 2017. - Vol. 175. - P51-57, DOI 10.1016/j.jphotobiol.2017.08.024. - Cited References:30. - These studies were funded by RFBR and the Government of Krasnoyarsk Territory according to the research project No. 16-44-242099 and the state budget allocated to the fundamental research at the Russian Academy of Sciences (project No. 0356-2016-0712). . - ISSN 1011-1344
РУБ Biochemistry & Molecular Biology + Biophysics
Рубрики:
GAUSSIA-PRINCEPS LUCIFERASE
   ESCHERICHIA-COLI
   EXPRESSION
   PROTEIN
Кл.слова (ненормированные):
Copepod luciferase -- Disulfide bonds -- Cysteine-rich protein -- Oxidative -- refolding
Аннотация: The bioluminescence of a marine copepod Metridia Tonga is determined by a small secreted coelenterazine-dependent luciferase that uses coelenterazine as a substrate of enzymatic reaction to generate light (lambda(max) = 480 nm). To date, four different isoforms of the luciferase differing in size, sequences, and properties have been cloned by functional screening. All of them contain ten conserved Cys residues that suggests up to five S-S intramolecular bonds per luciferase molecule. Whereas the use of copepod luciferases as bioluminescent reporters in biomedical research in vivo is growing from year to year, their application for in vitro assays is still limited by the difficulty in obtaining significant amounts of luciferase. The most cost-effective host for producing recombinant proteins is Escherichia coli. However, prokaryotic and eukaryotic cells maintain the reductive environment in cytoplasm that hinders the disulfide bond formation and consequently the proper folding of luciferase. Here we report the expression of the MLuc7 isoform of M. longa luciferase in E. colt cells and the efficient procedure for refolding from inclusion bodies yielding a high-active monomeric protein. Furthermore, in a set of identical experiments we demonstrate that bioluminescent and structural features of MLuc7 produced in bacterial cells are identical to those of MLuc7 isoform produced from culture medium of insect cells. Although the yield of high-purity protein is only 6 mg/L, the application of E. coil cells to produce the luciferase is simpler and more cost-effective than the use of insect cells. We expect that the suggested technology of Metridia luciferase production allows obtaining of sufficient amounts of protein both for the development of novel in vitro analytical assays with the use of MLuc7 as a label and for structural studies.

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Держатели документа:
RAS, Krasnoyarsk Sci Ctr SB, Fed Res Ctr, Photobiol Lab,Inst Biophys SB, Krasnoyarsk, Russia.
Siberian Fed Univ, Krasnoyarsk, Russia.

Доп.точки доступа:
Markova, Svetlana V.; Larionova, Marina D.; Gorbunova, Darya A.; Vysotski, Eugene S.; RFBR; Government of Krasnoyarsk Territory [16-44-242099]; Russian Academy of Sciences [0356-2016-0712]

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16.


   
    Bioluminescent and structural features of native folded Gaussia luciferase / M. D. Larionova, S. V. Markova, E. S. Vysotski // J. Photochem. Photobiol. B Biol. - 2018. - Vol. 183. - P309-317, DOI 10.1016/j.jphotobiol.2018.04.050 . - ISSN 1011-1344
Кл.слова (ненормированные):
Bioluminescence -- Coelenterazine -- Copepod luciferase -- Halophilic enzyme -- Kinetic cooperativity
Аннотация: The secreted luciferases responsible for light emission of marine copepods have gained popularity for being used in noninvasive imaging of intracellular events. The secreted luciferase of copepod Gaussia princeps is a one-subunit protein catalyzing coelenterazine oxidation to emit blue light. It consists of the N-terminal variable part that bears a signal peptide for secretion and the C-terminal catalytic domain containing ten highly conserved Cys residues supposing the existence of up to five S–S bonds. Despite wide application of Gaussia luciferase in biomedical research, its biochemical properties are still insufficiently studied due to the general problem of obtaining the proper folded Cys-rich proteins in bacterial cells. Here we report the properties of the proper folded Gaussia luciferase produced in insect cells using baculovirus expression system. This high purity luciferase reveals the highest activity at 15–20 °C but retains only ~20% activity at 37 °C that may hamper its application for in vivo assays. The maximum of bioluminescent activity of GpLuc is found at NaCl concentrations in the range of 1.0–1.5 M and, furthermore, a high NaCl concentration enhances luciferase stability to thermal denaturation, i.e. Gaussia luciferase displays the features characteristic of halophilic enzymes. The studies on bioluminescence kinetics at different coelenterazine concentrations obviously show a positive cooperativity of Gaussia luciferase with coelenterazine (Hill coefficient – 1.8 ± 0.2; K0.5–2.14 ± 0.17 ?M). We suggest this effect to be rather due to the so-called kinetic cooperativity conditioned by conformational changes in response to substrate binding than to the presence of two catalytic sites. © 2018 Elsevier B.V.

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Держатели документа:
Photobiology Laboratory, Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Larionova, M. D.; Markova, S. V.; Vysotski, E. S.

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17.


   
    Preliminary estimation of the export of omega-3 polyunsaturated fatty acids from aquatic to terrestrial ecosystems in biomes via emergent insects / M. I. Gladyshev, E. E. Gladysheva, N. N. Sushchik // Ecol. Complex. - 2019. - Vol. 38. - P140-145, DOI 10.1016/j.ecocom.2019.03.007. - Cited References:84. - The work was supported by the project of Siberian Federal University, carried out according to Federal Tasks of Ministry of Education and Science of the Russian Federation No. 6.1504.2017/PCh and by Russian Federal Tasks of Fundamental Research (project No. 51.1.1). We are grateful to two anonymous Reviewers for their kind help to significantly improve the manuscript. . - ISSN 1476-945X. - ISSN 1476-9840
РУБ Ecology
Рубрики:
BENTHIC SECONDARY PRODUCTION
   RECIPROCAL SUBSIDIES
   FRESH-WATER
Кл.слова (ненормированные):
Eicosapentaenoic acid -- Docosahexaenoic acid -- Aquatic-terrestrial -- subsidies -- Food quality -- Water/land area ratio
Аннотация: Some terrestrial consumers may be limited by food quality, namely by contents of essential polyunsaturated fatty acids (PUFA), eicosapentaenoic acid (20:5n - 3, EPA) and docosahexaenoic acid (22:6n - 3, DHA) in their food. Since EPA and DHA are mainly produced in aquatic ecosystems, for future estimating of the potential limitation by food quality in global scale, the water-land fluxes of these PUFA with the biomass of emergent aquatic insects in several biomes were calculated. The water /land area ratios for each biome were calculated by dividing the water area of each biome by its terrestrial area. Data on insect emergence from water bodies (g of dry mass m(-2) year(-1)), were summarized and averaged for each biome. From available data, EPA and DHA contents (mg g(-1) dry mass), in the biomass of emergent aquatic insects were calculated first so that annual fluxes of PUFA to land area via aquatic insect emergence could be estimated for each biome. PUFA fluxes occurred between the biomes, ranging from 0.04 to 4.39 mg m(-2) year(-1). In this study, the aquatic PUFA supply to land area appeared to be significantly lower than estimated earlier. This suggests that terrestrial consumers may experience food quality limitations mediated by shortage of PUFA compounds.

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Держатели документа:
Siberian Fed Univ, Svobodny Av 79, Krasnoyarsk 660041, Russia.
Russian Acad Sci, Inst Biophys, Fed Res Ctr, Krasnoyarsk Sci Ctr,Siberian Branch, Krasnoyarsk 660036, Russia.

Доп.точки доступа:
Gladyshev, Michail, I; Gladysheva, Elena E.; Sushchik, Nadezhda N.; Siberian Federal University [6.1504.2017/PCh]; Russian Federal Tasks of Fundamental Research [51.1.1]

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18.


   
    Mathematical models for determining the boundaries of forest areas unstable to the appearance of insects using satellite data (MODIS) / A. A. Kovalev, Yu. D. Ivanova, A. A. Sukhovolskiy [et al.] // IOP Conference Series: Materials Science and Engineering : Institute of Physics Publishing, 2020. - Vol. 734: 2nd International Scientific Conference on Advanced Technologies in Aerospace, Mechanical and Automation Engineering, MIST: Aerospace 2019 (18 November 2019 through 21 November 2019, ) Conference code: 157461, Is. 1. - Ст. 012091, DOI 10.1088/1757-899X/734/1/012091
Аннотация: The proposed approach allows us to evaluate the response of forest stands to local weather changes and resistance to insect attack without using data from weather stations, sometimes located far from experimental forest areas. All raw data were obtained during the season using remote sensing data (MODIS / AQUA). The ability to pre-determine decrease and loss of forest stands resistance to possible insect attacks can be extremely important for solving the tasks of forest-entomological monitoring and calculating the risk of forest insect's outbreaks. © Published under licence by IOP Publishing Ltd.

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Держатели документа:
Krasnoyarsk Scientific Center SB RAS, Krasnoyarsk, Russian Federation
Institute of Biophysics SB RAS, Krasnoyarsk, Russian Federation
Siberian Federal University, Krasnoyarsk, Russian Federation
Institute of Forest SB RAS, Krasnoyarsk, Russian Federation

Доп.точки доступа:
Kovalev, A. A.; Ivanova, Yu. D.; Sukhovolskiy, A. A.; Volkov, V. E.; Sukhovolskiy, V. G.

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