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Каталог книг и брошюр библиотеки ИФ СО РАН

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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Vyunisheva S. A., Myslivets S. A., Davletshin, Nikolay N., Eremeeva, Elena V., Vysotski, Eugene S., Pavlov, Igor N., Vyunishev A. M.
Заглавие : Intracavity enhancement of GFP fluorescence induced by femtosecond laser pulses
Колич.характеристики :5 с
Место публикации : Spectrochim. Acta A. - 2023. - Vol. 300. - Ст.122885. - ISSN 13861425 (ISSN), DOI 10.1016/j.saa.2023.122885. - ISSN 18733557 (eISSN)
Примечания : Cited References: 23
Аннотация: The phenomenon of fluorescence is widely used in molecular biology for studying the interaction of light with biological objects. In this article, we present an experimental investigation of the enhancement of laser-induced fluorescence of Clytia gregaria green fluorescent protein. The laser-induced fluorescence method applied in our work combines the advantages of femtosecond laser pulses and a photonic crystal cavity, with the time dependence of the fluorescence signal studied. It is shown that a green fluorescent protein solution placed in a microcavity and excited by femtosecond laser pulses leads to an increase in fluorescence on the microcavity modes, which can be estimated by two orders of magnitude. The dependences of fluorescence signal saturation on the average integrated optical pump power are demonstrated and analyzed. The results obtained are of interest for the development of potential applications of biophotonics and extension of convenient methods of laser-induced fluorescence.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Lin C. -R., Ivanova O. S., Petrov D. A., Sokolov A. Е., Chen Y. -Z., Gerasimova M. A., Zharkov S. M., Tseng Y. -T., Shestakov N. P., Edelman I. S.
Заглавие : Amino-functionalized Fe3O4@SiO2 core-shell magnetic nanoparticles for dye adsorption
Место публикации : Nanomaterials. - 2021. - Vol. 11, Is. 9. - Ст.2371. - ISSN 20794991 (ISSN), DOI 10.3390/nano11092371
Примечания : Cited References: 35. - The authors are thankful for the financial support the Russian Foundation for Basic Research, Grant № 19-52-52002, Ministry of Science and Technology of Taiwan, Grants MOST № 108-2923-M-153-001-MY3 and № 109-2112-M-153-003-, the Russian Foundation for Basic Research with Government of Krasnoyarsk Territory, Krasnoyarsk Regional Fund of Science, the research project number 19-42-240005: “Features of the electronic structure, magnetic properties and optical excitations in nanocrystals of the multifunctional magnetic chalcogenides Fe3S4 and FeSe”. We thank also the SFU Joint Scientific Center supported by the State assignment (#FSRZ-2020-0011) of the Ministry of Science and Higher Education of the Russian Federation, where the Transmission Electron Microscopy studies were carried out
Аннотация: Fe3O4@SiO2 core-shell nanoparticles (NPs) were synthesized with the co-precipitation method and functionalized with NH2 amino-groups. The nanoparticles were characterized by X-ray, FT-IR spectroscopy, transmission electron microscopy, selected area electron diffraction, and vibrating sample magnetometry. The magnetic core of all the nanoparticles was shown to be nanocrystalline with the crystal parameters corresponding only to the Fe3O4 phase covered with a homogeneous amorphous silica (SiO2) shell of about 6 nm in thickness. The FT-IR spectra confirmed the appearance of chemical bonds at amino functionalization. The magnetic measurements revealed unusually high saturation magnetization of the initial Fe3O4 nanoparticles, which was presumably associated with the deviations in the Fe ion distribution between the tetrahedral and octahedral positions in the nanocrystals as compared to the bulk stoichiometric magnetite. The fluorescent spectrum of eosin Y-doped NPs dispersed in water solution was obtained and a red shift and line broadening (in comparison with the dye molecules being free in water) were revealed and explained. Most attention was paid to the adsorption properties of the nanoparticles with respect to three dyes: methylene blue, Congo red, and eosin Y. The kinetic data showed that the adsorption processes were associated with the pseudo-second order mechanism for all three dyes. The equilibrium data were more compatible with the Langmuir isotherm and the maximum adsorption capacity was reached for Congo red.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Chilom C. G., Sandu N., Iftimie S., Balasoiu M., Rogachev A., Orelovich O., Stolyar S. V.
Заглавие : Interactions of chemically synthesized ferrihydrite nanoparticles with human serum transferrin: Insights from fluorescence spectroscopic studies
Место публикации : Int. J. Mol. Sci. - 2021. - Vol. 22, Is. 13. - Ст.7034. - ISSN 16616596 (ISSN), DOI 10.3390/ijms22137034
Примечания : Cited References: 39. - The work was accomplished with the financial support of the RO-JINR Projects No. 365/11.05.2021, items 8, 87 and 98 and respectivelly, No. 366/11.05.2021, items 7, 86 and 97
Аннотация: Human serum transferrin (HST) is a glycoprotein involved in iron transport that may be a candidate for functionalized nanoparticles to bind and target cancer cells. In this study, the effects of the simple and doped with cobalt (Co) and copper (Cu) ferrihydrite nanoparticles (Fh-NPs, Cu-Fh-NPs, and Co-Fh-NPs) were studied by spectroscopic and molecular approaches. Fluorescence spectroscopy revealed a static quenching mechanism for all three types of Fh-NPs. All Fh-NPs interacted with HST with low affinity, and the binding was driven by hydrogen bonding and van der Waals forces for simple Fh-NPs and by hydrophobic interactions for Cu-Fh-NPs and Co-Fh-NPs binding, respectively. Of all samples, simple Fh-NPs bound the most to the HST binding site. Fluorescence resonance energy transfer (FRET) allowed the efficient determination of the energy transfer between HST and NPs and the distance at which the transfer takes place and confirmed the mechanism of quenching. The denaturation of the HST is an endothermic process, both in the case of apo HST and HST in the presence of the three types of Fh-NPs. Molecular docking studies revealed that Fh binds with a low affinity to HST (Ka = 9.17 × 103 M−1) in accord with the fluorescence results, where the interaction between simple Fh-NPs and HST was described by a binding constant of 9.54 × 103 M−1.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Dong R., Yao Y., Li D., Zhang H., Li W., Molokeev M. S., Liu Y., Lei B.
Заглавие : Ratio fluorescent hybrid probe for visualized fluorescence detection of H2O2 in vitro and in vivo
Место публикации : Sens. Actuators B: Chem. - 2020. - Vol. 321. - Ст.128643. - ISSN 09254005 (ISSN), DOI 10.1016/j.snb.2020.128643
Примечания : Cited References: 65. - The present work was supported by the National Natural Science Foundations of China (Grant No. 21671070 ), the project supported by the GDUPS (2018) for Prof. Bingfu LEI, the Project for Construction of High-level University in Guangdong Province of China, the Guangzhou Science & Technology Project , China (No. 201707010033 ), the Special Funds for the Cultivation of Guangdong College Students’ Scientific and Technological Innovation (No. 201910564035 ), and the National Undergraduate Innovation and Entrepreneurship Training Program granted for Riyue Dong
Аннотация: A silicon oxide quantum dots (Si-O QDs) and Ag nanoclusters hybrid nanosensing probe with dual-emission and small nanocrystals that acts as an “off-on” ratio fluorescent probe for hydrogen peroxide (H2O2) detection was developed. The probe was used to measure the H2O2 concentration generated by mitochondria in vitro via recording the I455/I680 fluorescence ratio. Furthermore, this hybrid probe was applied to monitor the wound-induced H2O2 in lettuce leaf, and realized the visualized fluorescence qualitative detection H2O2 in vivo via laser scanning confocal microscope. The working mechanism of the probe is also investigated. Inner filter effect (IFE) estimation, Fourier transform infrared (FTIR) spectra and high-resolution transmission electron microscopy (HRTEM) images were applied to study the quenching mechanism and recovering reason of Si-O QDs fluorescence. The results show that the blue fluorescence of Si-O QDs can be quenched by Ag NCs via the IFE and fluorescent resonance energy transfer (FRET) effect. After adding H2O2, the surface groups of Ag NCs was changed and the IFE and FRET effects between the Si-O QDs and Ag NCs are disabled, thus the quenched Si-O QDs luminescence can be regularly recovered.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Zhang, Guangqing, Molokeev M. S., Ma, Qianchao, Yang, Xuening, Han, Shuiquan, Chen, Q.i., Zhong, Binnian, Ma, Bin
Заглавие : Structural analysis and optical temperature sensing performance of Eu3+-doped Ba3In(PO4)3
Место публикации : CrystEngComm. - 2020. - Vol. 22, Is. 35. - P.5809-5817. - ISSN 1466-8033, DOI 10.1039/d0ce00997k
Примечания : Cited References: 52. - This work was supported by the National Natural Science Foundation of China (Grant No. 51802172) and the Qinghai Provincial Natural Science Foundation for Young Scholars (No. 2018-ZJ-957Q)
Предметные рубрики: FLUORESCENCE INTENSITY RATIO
UP-CONVERSION EMISSIONS
RARE-EARTH IONS
Аннотация: Eu3+-Doped Ba3In(PO4)3 was synthesized through a high-temperature solid-phase method. According to the structure refinement based on X-ray diffraction and density functional theory, the crystal and energy band structures of Ba3In(1−x)(PO4)3:xEu3+ were studied and analyzed in detail. The effect of Eu3+ doping concentrations on emission was studied at an excitation wavelength of 393 nm. For the material Ba3In(1−x)(PO4)3:xEu3+(x = 0.01–0.30), the optimal doping level is confirmed to be 0.18. Due to the thermal quenching differences of Eu3+ at the 5D0 and 5D1 energy levels, and based on the temperature-variable fluorescence intensity ratio between emission peaks, the optical temperature measurement performance of this material in the temperature range from 298.15 K to 623.15 K was characterized, and the maximum absolute and relative sensor sensitivities (Sa and Sr) were determined to be 0.1002 K−1 and 4.058%, respectively. With temperature as the only variable, the color of the phosphor changes from red to yellow light with rising temperature. Besides, Sa and Sr values of this phosphor are comparable to other sensing materials. The results indicate that Eu3+-doped Ba3In(PO4)3 phosphors have great potential to be applied in optical temperature sensing.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Gerasimova M. A., Tomilin F. N., Malyar E. Y., Varganov S. A., Fedorov D. G., Ovchinnikov S. G., Slyusareva E. A.
Заглавие : Fluorescence and photoinduced proton transfer in the protolytic forms of fluorescein: Experimental and computational study
Место публикации : Dyes Pigm. - 2020. - Vol. 173. - Ст.107851. - ISSN 01437208 (ISSN), DOI 10.1016/j.dyepig.2019.107851
Примечания : Cited References: 58. - This work is supported by the Russian Foundation for Basic Research, Russia (project 19-02-00450 ). S.A.V. thanks the National Science Foundation, United States for financial support through a CAREER Award ( CHE-1654547 ).
Аннотация: In contrast to the well-studied absorption spectra of different protolytic forms of fluorescein, the complex structure of the fluorescence spectra in a wide pH range is not completely understood because of the interplay between emission and photoinduced proton transfer in the electronic excited states. We provide insight into this interplay through a combined analysis of the experimental data, obtained by absorption and steady-state fluorescence spectroscopy at pH 0.3–10.5, and the time-dependent density functional theory (TD-DFT). The TD-DFT based computational model is validated on dianion and used to model the spectra of other protolytic forms. The protolytic/tautomeric forms of fluorescein are classified according to the partial charges on the triple chromophore ring, and electronic transitions are analyzed in terms of changes in molecular geometries and orbitals. A linear regression analysis between the calculated and experimental results based on both absorption and well-understood dianionic and cationic fluorescence peaks is used to assign the monoanionic (496 nm), neutral quinoid (550 nm) and neutral zwitterionic (483 nm) fluorescence peaks, whose positions were not clear prior to this work. The values of the excited-state dissociation microconstants pka* for different forms of fluorescein are calculated by means of the Forster cycle in conjunction with the spectroscopic measurements and computational data.
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Вид документа : Статья из сборника (выпуск продолж. издания)
Шифр издания :
Автор(ы) : Bukhanov E. R., Gurevich Y., Krakhalev M. N., Shabanov D. A.
Заглавие : Modeling optical properties of plant epicuticular wax
Коллективы : IEEE International Conference on Information Technology and Nanotechnology
Место публикации : Proceedings of ITNT 2020 - 6th IEEE International Conference on Information Technology and Nanotechnology: Institute of Electrical and Electronics Engineers Inc., 2020. - Ст.9253272. - DOI 10.1109/ITNT49337.2020.9253272
Примечания : Cited References: 39
Аннотация: Wax is found on the leaves almost of all plants. Its physicochemical and protective properties are widely discussed in the scientific literature. In the presented work, the influence of the structure of wax on the optical properties in wheat leaves and needles of blue spruce has been revealed for the first time. Long-period ordering was established. The structural elements are nanotubes up to several microns in length and about 150 nm in diameter. The paper presents the influence of a long-period structure on the optical properties and local characteristics of light waves, including the transmission spectrum, the density of photon states, as well as fluorescence spectra and polarization microscopy. Using modern mathematical tools, the main spectral and optical characteristics were calculated using the example of the wax cover of blue spruce and glaucas wheat. Based on calculations that establish the relationship between the structural, spectral and optical properties, the influence of wax structures on the process of photosynthesis was revealed.
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Вид документа : Статья из журнала
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Автор(ы) : Rogova A. V., Tomilin F. N., Gerasimova M. A., Slyusareva E. A.
Заглавие : Modeling of Electronic Spectra of Ionic Forms of Eosin and Erythrosin
Место публикации : Russ. Phys. J. - 2020. - Vol. 63, Is. 8. - P.1417-1423. - ISSN 10648887 (ISSN), DOI 10.1007/s11182-020-02186-1
Примечания : Cited References: 17
Аннотация: Multistage dissociation of fluoroscein dyes, widely used in biological labeling, yields a variety of ionic and tautomeric forms in a wide range of pH values. In contrast to well-studied absorption spectra, the emission spectra are not quite readily interpreted due to their strong overlapping and proton transfer in electronically excited states. The least studied are the fluorescent properties of eosin and erythrosin dyes containing heavy atoms (Br, I), in which the characteristics of the dianionic form only are reliably determined. In the framework of the density functional theory using the B3LYP-functional including nonequilibrium solvation, the geometries of the series of ionic forms of eosin and erythrosin in the ground and excited states are found, and the electronic spectra are calculated. Based on the identified linear regression of the calculated and experimental data for the earlier resolved electronic spectra, for the first time, the emission spectrum maxima of the monoanionic, neutral quinoid, and cationic forms of the dyes are determined. The spectral peculiarities (Stokes shifts) are discussed in terms of variation of the molecule and ion geometries in the ground and excited states.
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Вид документа : Статья из журнала
Шифр издания :
Автор(ы) : Буханов, Евгений Романович, Шабанов, Александр Васильевич, Крахалев, Михаил Николаевич, Волочаев, Михаил Николаевич, Гуревич, Юрий Леонидович
Заглавие : Влияние строения на оптические свойства эпикулярного воска голубой ели (Picea pungens)
Место публикации : Ученые зап. физ. фак-та МГУ. - 2019. - № 5. - Ст.1950502. - ISSN 2307-9665 (eISSN)
Примечания : Библиогр.: 36
Аннотация: Выполнено исследование морфологических и оптических характеристик с эпикулярного воскового слоя голубой ели (Picea pungens). Методом сканирующей электронной микроскопии выявлены структурные единицы – трубочки диаметром 150-200нм и длиной 3-5 мкм. Обнаружен эффект иризации от доменов воскового слоя. В отраженном свете домены имею голубую окраску, при наблюдении в проходящем свете приобретают розоватый оттенок. Эти оптические характеристики являются основными признаками фотоннокристаллической структурой. Проведено численное моделирование спектра пропускания с выявленными структурными оптическими параметрами с использованием метода трансфер матриц. Спектр максимума флюоресценции совпадает с дефектной модой рассчитанного спектра пропускания.The study of morphological and optical characteristics of the epicular wax layer of blue spruce (Picea pungens). The method of scanning electron microscopy revealed structural units - tubes with a diameter of 150-200 nm and a length of 3-5 microns. An iridescence eﬀect from the wax layer domains has been detected. In the reﬂected light, the domains have a blue color, when observed in transmitted light acquire a pinkish tint. These optical characteristics are the main features of the photonic crystal structure. A numerical simulation of the transmission spectrum with the identiﬁed structural optical parameters was carried out using the transfer matrix method. The spectrum of the maximum ﬂuorescence coincides with the defect mode of the calculated transmission spectrum.
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10.

Вид документа : Статья из сборника (выпуск монографической серии)
Шифр издания :
Автор(ы) : Bukhanov E. R., Gurevich Y. L., Shabanova K. A.
Заглавие : A study of wheat wax optical properties
Коллективы : Photonics and Electromagnetics Research Symposium - Fall
Место публикации : Photonics and Electromagnetics Research Symposium - Fall (2019 ; Dec 17-20 ; Xiamen, China). Photonics & Electromagnetics Research Symposium - Fall (PIERS - Fall): IEEE, 2019. - P.2890-2897. - (Progress in Electromagnetics Research Symposium). - , DOI 10.1109/PIERS-Fall48861.2019.9021781
Примечания : Cited References: 36
Предметные рубрики: DIMENSIONAL PHOTONIC CRYSTALS
BLUE-GREEN FLUORESCENCE
Аннотация: Epicuticular waxes are a multifunctional interface between a plant and the environment. In this paper wheat leaves wax has been studied. Wax isolation was carried out using the method of gradual freezing in water followed by slow thawing. The morphology of the samples obtained was observed with a Hitachi SU3500 electron microscope. The structure period is determined by the nanotubes diameter which equals 150-200 nm. Random orientation of their long axes in the layer allows using a one-dimensional model to calculate the transmission spectrum of a photonic crystal with the help of the transfer matrix method. While making the calculations a defect that may be caused by possible interlayer heterogeneity also must be taken into account. Numerical modeling made it possible to identify the stop zone and the defective mode. Intense fluorescence appears in the optical area of the wax layer under ultraviolet radiation, thus increasing the efficiency of photosynthesis.
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